data_1RN9 # _entry.id 1RN9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RN9 pdb_00001rn9 10.2210/pdb1rn9/pdb RCSB RCSB020900 ? ? WWPDB D_1000020900 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-08-24 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RN9 _pdbx_database_status.recvd_initial_deposition_date 2003-12-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1RMX _pdbx_database_related.details ;A SHORT LEXITROPSIN THAT RECOGNIZES THE DNA MINOR GROOVE AT 5'-ACTAGT-3': UNDERSTANDING THE ROLE OF ISOPROPYL-THIAZOLE ; _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Anthony, N.G.' 1 'Johnston, B.F.' 2 'Khalaf, A.I.' 3 'Mackay, S.P.' 4 'Parkinson, J.A.' 5 'Suckling, C.J.' 6 'Waigh, R.D.' 7 # _citation.id primary _citation.title ;Short Lexitropsin that Recognizes the DNA Minor Groove at 5'-ACTAGT-3': Understanding the Role of Isopropyl-thiazole. ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 126 _citation.page_first 11338 _citation.page_last 11349 _citation.year 2004 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15355117 _citation.pdbx_database_id_DOI 10.1021/ja030658n # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Anthony, N.G.' 1 ? primary 'Johnston, B.F.' 2 ? primary 'Khalaf, A.I.' 3 ? primary 'MacKay, S.P.' 4 ? primary 'Parkinson, J.A.' 5 ? primary 'Suckling, C.J.' 6 ? primary 'Waigh, R.D.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3'" _entity.formula_weight 3045.005 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DC)(DT)(DA)(DG)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGACTAGTCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DC n 1 5 DT n 1 6 DA n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesized on solid phase' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DG 2 12 12 DG G B . n B 1 3 DA 3 13 13 DA A B . n B 1 4 DC 4 14 14 DC C B . n B 1 5 DT 5 15 15 DT T B . n B 1 6 DA 6 16 16 DA A B . n B 1 7 DG 7 17 17 DG G B . n B 1 8 DT 8 18 18 DT T B . n B 1 9 DC 9 19 19 DC C B . n B 1 10 DG 10 20 20 DG G B . n # _exptl.entry_id 1RN9 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1RN9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1RN9 _struct.title ;A SHORT LEXITROPSIN THAT RECOGNIZES THE DNA MINOR GROOVE AT 5'-ACTAGT-3': UNDERSTANDING THE ROLE OF ISOPROPYL-THIAZOLE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1RN9 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1RN9 _struct_ref.pdbx_db_accession 1RN9 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1RN9 A 1 ? 10 ? 1RN9 1 ? 10 ? 1 10 2 1 1RN9 B 1 ? 10 ? 1RN9 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DG 7 N1 ? ? A DA 3 B DG 17 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DG 7 O6 ? ? A DA 3 B DG 17 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog9 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 A DC 1 ? ? N3 A DC 1 ? ? 1.441 1.353 0.088 0.008 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.268 1.335 -0.067 0.007 N 3 1 C2 A DG 2 ? ? N3 A DG 2 ? ? 1.272 1.323 -0.051 0.008 N 4 1 N3 A DG 2 ? ? C4 A DG 2 ? ? 1.441 1.350 0.091 0.007 N 5 1 C4 A DG 2 ? ? C5 A DG 2 ? ? 1.328 1.379 -0.051 0.007 N 6 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.438 1.388 0.050 0.006 N 7 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.259 1.305 -0.046 0.006 N 8 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.306 1.374 -0.068 0.007 N 9 1 N9 A DG 2 ? ? C4 A DG 2 ? ? 1.311 1.375 -0.064 0.008 N 10 1 C5 A DA 3 ? ? N7 A DA 3 ? ? 1.342 1.388 -0.046 0.006 N 11 1 N7 A DA 3 ? ? C8 A DA 3 ? ? 1.265 1.311 -0.046 0.007 N 12 1 C8 A DA 3 ? ? N9 A DA 3 ? ? 1.306 1.373 -0.067 0.008 N 13 1 C2 A DC 4 ? ? N3 A DC 4 ? ? 1.440 1.353 0.087 0.008 N 14 1 N3 A DC 4 ? ? C4 A DC 4 ? ? 1.267 1.335 -0.068 0.007 N 15 1 C5 A DA 6 ? ? N7 A DA 6 ? ? 1.343 1.388 -0.045 0.006 N 16 1 N7 A DA 6 ? ? C8 A DA 6 ? ? 1.264 1.311 -0.047 0.007 N 17 1 C8 A DA 6 ? ? N9 A DA 6 ? ? 1.305 1.373 -0.068 0.008 N 18 1 C2 A DG 7 ? ? N3 A DG 7 ? ? 1.274 1.323 -0.049 0.008 N 19 1 N3 A DG 7 ? ? C4 A DG 7 ? ? 1.441 1.350 0.091 0.007 N 20 1 C4 A DG 7 ? ? C5 A DG 7 ? ? 1.330 1.379 -0.049 0.007 N 21 1 C6 A DG 7 ? ? N1 A DG 7 ? ? 1.349 1.391 -0.042 0.007 N 22 1 C5 A DG 7 ? ? N7 A DG 7 ? ? 1.438 1.388 0.050 0.006 N 23 1 N7 A DG 7 ? ? C8 A DG 7 ? ? 1.258 1.305 -0.047 0.006 N 24 1 C8 A DG 7 ? ? N9 A DG 7 ? ? 1.303 1.374 -0.071 0.007 N 25 1 N9 A DG 7 ? ? C4 A DG 7 ? ? 1.312 1.375 -0.063 0.008 N 26 1 C2 A DC 9 ? ? N3 A DC 9 ? ? 1.442 1.353 0.089 0.008 N 27 1 N3 A DC 9 ? ? C4 A DC 9 ? ? 1.270 1.335 -0.065 0.007 N 28 1 C2 A DG 10 ? ? N3 A DG 10 ? ? 1.272 1.323 -0.051 0.008 N 29 1 N3 A DG 10 ? ? C4 A DG 10 ? ? 1.441 1.350 0.091 0.007 N 30 1 C4 A DG 10 ? ? C5 A DG 10 ? ? 1.329 1.379 -0.050 0.007 N 31 1 C5 A DG 10 ? ? N7 A DG 10 ? ? 1.437 1.388 0.049 0.006 N 32 1 N7 A DG 10 ? ? C8 A DG 10 ? ? 1.258 1.305 -0.047 0.006 N 33 1 C8 A DG 10 ? ? N9 A DG 10 ? ? 1.303 1.374 -0.071 0.007 N 34 1 N9 A DG 10 ? ? C4 A DG 10 ? ? 1.311 1.375 -0.064 0.008 N 35 1 C2 B DC 11 ? ? N3 B DC 11 ? ? 1.439 1.353 0.086 0.008 N 36 1 N3 B DC 11 ? ? C4 B DC 11 ? ? 1.268 1.335 -0.067 0.007 N 37 1 C2 B DG 12 ? ? N3 B DG 12 ? ? 1.274 1.323 -0.049 0.008 N 38 1 N3 B DG 12 ? ? C4 B DG 12 ? ? 1.442 1.350 0.092 0.007 N 39 1 C4 B DG 12 ? ? C5 B DG 12 ? ? 1.329 1.379 -0.050 0.007 N 40 1 C5 B DG 12 ? ? N7 B DG 12 ? ? 1.438 1.388 0.050 0.006 N 41 1 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.259 1.305 -0.046 0.006 N 42 1 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.304 1.374 -0.070 0.007 N 43 1 N9 B DG 12 ? ? C4 B DG 12 ? ? 1.314 1.375 -0.061 0.008 N 44 1 C5 B DA 13 ? ? N7 B DA 13 ? ? 1.344 1.388 -0.044 0.006 N 45 1 N7 B DA 13 ? ? C8 B DA 13 ? ? 1.266 1.311 -0.045 0.007 N 46 1 C8 B DA 13 ? ? N9 B DA 13 ? ? 1.305 1.373 -0.068 0.008 N 47 1 C2 B DC 14 ? ? N3 B DC 14 ? ? 1.440 1.353 0.087 0.008 N 48 1 N3 B DC 14 ? ? C4 B DC 14 ? ? 1.269 1.335 -0.066 0.007 N 49 1 C5 B DA 16 ? ? N7 B DA 16 ? ? 1.343 1.388 -0.045 0.006 N 50 1 N7 B DA 16 ? ? C8 B DA 16 ? ? 1.267 1.311 -0.044 0.007 N 51 1 C8 B DA 16 ? ? N9 B DA 16 ? ? 1.306 1.373 -0.067 0.008 N 52 1 C2 B DG 17 ? ? N3 B DG 17 ? ? 1.274 1.323 -0.049 0.008 N 53 1 N3 B DG 17 ? ? C4 B DG 17 ? ? 1.441 1.350 0.091 0.007 N 54 1 C4 B DG 17 ? ? C5 B DG 17 ? ? 1.330 1.379 -0.049 0.007 N 55 1 C6 B DG 17 ? ? N1 B DG 17 ? ? 1.349 1.391 -0.042 0.007 N 56 1 C5 B DG 17 ? ? N7 B DG 17 ? ? 1.438 1.388 0.050 0.006 N 57 1 N7 B DG 17 ? ? C8 B DG 17 ? ? 1.259 1.305 -0.046 0.006 N 58 1 C8 B DG 17 ? ? N9 B DG 17 ? ? 1.299 1.374 -0.075 0.007 N 59 1 N9 B DG 17 ? ? C4 B DG 17 ? ? 1.312 1.375 -0.063 0.008 N 60 1 C2 B DC 19 ? ? N3 B DC 19 ? ? 1.441 1.353 0.088 0.008 N 61 1 N3 B DC 19 ? ? C4 B DC 19 ? ? 1.269 1.335 -0.066 0.007 N 62 1 C2 B DG 20 ? ? N3 B DG 20 ? ? 1.271 1.323 -0.052 0.008 N 63 1 N3 B DG 20 ? ? C4 B DG 20 ? ? 1.440 1.350 0.090 0.007 N 64 1 C4 B DG 20 ? ? C5 B DG 20 ? ? 1.330 1.379 -0.049 0.007 N 65 1 C5 B DG 20 ? ? N7 B DG 20 ? ? 1.439 1.388 0.051 0.006 N 66 1 N7 B DG 20 ? ? C8 B DG 20 ? ? 1.260 1.305 -0.045 0.006 N 67 1 C8 B DG 20 ? ? N9 B DG 20 ? ? 1.304 1.374 -0.070 0.007 N 68 1 N9 B DG 20 ? ? C4 B DG 20 ? ? 1.310 1.375 -0.065 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 101.82 104.50 -2.68 0.40 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 117.32 121.90 -4.58 0.40 N 3 1 C4 A DC 1 ? ? C5 A DC 1 ? ? C6 A DC 1 ? ? 120.52 117.40 3.12 0.50 N 4 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.86 118.90 4.96 0.60 N 5 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 115.26 121.90 -6.64 0.70 N 6 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 122.25 118.00 4.25 0.70 N 7 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 107.40 119.60 -12.20 1.50 N 8 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 120.85 111.90 8.95 0.50 N 9 1 N3 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 119.28 128.60 -9.32 0.50 N 10 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 116.57 111.50 5.07 0.50 N 11 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 101.52 110.80 -9.28 0.40 N 12 1 C5 A DG 2 ? ? N7 A DG 2 ? ? C8 A DG 2 ? ? 108.93 104.30 4.63 0.50 N 13 1 N9 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 111.49 105.40 6.09 0.40 N 14 1 C6 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 139.26 130.40 8.86 0.60 N 15 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 120.32 128.60 -8.28 0.60 N 16 1 OP1 A DA 3 ? ? P A DA 3 ? ? OP2 A DA 3 ? ? 107.93 119.60 -11.67 1.50 N 17 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.79 105.90 -5.11 0.80 N 18 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 121.58 129.30 -7.72 0.50 N 19 1 C2 A DA 3 ? ? N3 A DA 3 ? ? C4 A DA 3 ? ? 118.17 110.60 7.57 0.50 N 20 1 N3 A DA 3 ? ? C4 A DA 3 ? ? C5 A DA 3 ? ? 120.37 126.80 -6.43 0.70 N 21 1 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 120.95 117.00 3.95 0.50 N 22 1 C4 A DA 3 ? ? C5 A DA 3 ? ? N7 A DA 3 ? ? 105.93 110.70 -4.77 0.50 N 23 1 C5 A DA 3 ? ? N7 A DA 3 ? ? C8 A DA 3 ? ? 109.35 103.90 5.45 0.50 N 24 1 N3 A DA 3 ? ? C4 A DA 3 ? ? N9 A DA 3 ? ? 133.72 127.40 6.32 0.80 N 25 1 OP1 A DC 4 ? ? P A DC 4 ? ? OP2 A DC 4 ? ? 108.27 119.60 -11.33 1.50 N 26 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? "C2'" A DC 4 ? ? 98.72 105.90 -7.18 0.80 N 27 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.79 108.30 4.49 0.30 N 28 1 N3 A DC 4 ? ? C4 A DC 4 ? ? C5 A DC 4 ? ? 117.16 121.90 -4.74 0.40 N 29 1 C4 A DC 4 ? ? C5 A DC 4 ? ? C6 A DC 4 ? ? 120.55 117.40 3.15 0.50 N 30 1 N1 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 124.34 118.90 5.44 0.60 N 31 1 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 114.63 121.90 -7.27 0.70 N 32 1 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DT 5 ? ? 127.49 119.70 7.79 1.20 Y 33 1 OP1 A DT 5 ? ? P A DT 5 ? ? OP2 A DT 5 ? ? 108.20 119.60 -11.40 1.50 N 34 1 N1 A DT 5 ? ? C2 A DT 5 ? ? N3 A DT 5 ? ? 119.36 114.60 4.76 0.60 N 35 1 C2 A DT 5 ? ? N3 A DT 5 ? ? C4 A DT 5 ? ? 122.71 127.20 -4.49 0.60 N 36 1 C5 A DT 5 ? ? C4 A DT 5 ? ? O4 A DT 5 ? ? 120.50 124.90 -4.40 0.70 N 37 1 OP1 A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 107.63 119.60 -11.97 1.50 N 38 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? "C2'" A DA 6 ? ? 100.95 105.90 -4.95 0.80 N 39 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 121.82 129.30 -7.48 0.50 N 40 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 117.92 110.60 7.32 0.50 N 41 1 N3 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 120.82 126.80 -5.98 0.70 N 42 1 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 120.95 117.00 3.95 0.50 N 43 1 C4 A DA 6 ? ? C5 A DA 6 ? ? N7 A DA 6 ? ? 106.10 110.70 -4.60 0.50 N 44 1 C5 A DA 6 ? ? N7 A DA 6 ? ? C8 A DA 6 ? ? 108.97 103.90 5.07 0.50 N 45 1 N3 A DA 6 ? ? C4 A DA 6 ? ? N9 A DA 6 ? ? 133.31 127.40 5.91 0.80 N 46 1 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DG 7 ? ? 133.52 119.70 13.82 1.20 Y 47 1 OP1 A DG 7 ? ? P A DG 7 ? ? OP2 A DG 7 ? ? 105.89 119.60 -13.71 1.50 N 48 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? "C2'" A DG 7 ? ? 100.18 105.90 -5.72 0.80 N 49 1 C2 A DG 7 ? ? N3 A DG 7 ? ? C4 A DG 7 ? ? 120.75 111.90 8.85 0.50 N 50 1 N3 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 119.27 128.60 -9.33 0.50 N 51 1 C5 A DG 7 ? ? C6 A DG 7 ? ? N1 A DG 7 ? ? 116.72 111.50 5.22 0.50 N 52 1 C4 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 101.74 110.80 -9.06 0.40 N 53 1 C5 A DG 7 ? ? N7 A DG 7 ? ? C8 A DG 7 ? ? 108.82 104.30 4.52 0.50 N 54 1 N9 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 110.97 105.40 5.57 0.40 N 55 1 N3 A DG 7 ? ? C4 A DG 7 ? ? N9 A DG 7 ? ? 129.76 126.00 3.76 0.60 N 56 1 C6 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 139.13 130.40 8.73 0.60 N 57 1 C5 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 121.13 128.60 -7.47 0.60 N 58 1 OP1 A DT 8 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 107.83 119.60 -11.77 1.50 N 59 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 118.90 114.60 4.30 0.60 N 60 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 123.02 127.20 -4.18 0.60 N 61 1 C5 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 120.26 124.90 -4.64 0.70 N 62 1 OP1 A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 107.89 119.60 -11.71 1.50 N 63 1 N3 A DC 9 ? ? C4 A DC 9 ? ? C5 A DC 9 ? ? 117.59 121.90 -4.31 0.40 N 64 1 N1 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 123.89 118.90 4.99 0.60 N 65 1 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 115.21 121.90 -6.69 0.70 N 66 1 N3 A DC 9 ? ? C4 A DC 9 ? ? N4 A DC 9 ? ? 122.68 118.00 4.68 0.70 N 67 1 OP1 A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 107.80 119.60 -11.80 1.50 N 68 1 C2 A DG 10 ? ? N3 A DG 10 ? ? C4 A DG 10 ? ? 120.44 111.90 8.54 0.50 N 69 1 N3 A DG 10 ? ? C4 A DG 10 ? ? C5 A DG 10 ? ? 119.72 128.60 -8.88 0.50 N 70 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 116.20 111.50 4.70 0.50 N 71 1 C4 A DG 10 ? ? C5 A DG 10 ? ? N7 A DG 10 ? ? 101.92 110.80 -8.88 0.40 N 72 1 C5 A DG 10 ? ? N7 A DG 10 ? ? C8 A DG 10 ? ? 108.68 104.30 4.38 0.50 N 73 1 N9 A DG 10 ? ? C4 A DG 10 ? ? C5 A DG 10 ? ? 110.92 105.40 5.52 0.40 N 74 1 C6 A DG 10 ? ? C5 A DG 10 ? ? N7 A DG 10 ? ? 138.87 130.40 8.47 0.60 N 75 1 N1 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 123.66 119.90 3.76 0.60 N 76 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 120.13 128.60 -8.47 0.60 N 77 1 "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? 101.09 104.50 -3.41 0.40 N 78 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.14 108.30 2.84 0.30 N 79 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 117.09 121.90 -4.81 0.40 N 80 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 120.56 117.40 3.16 0.50 N 81 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 124.15 118.90 5.25 0.60 N 82 1 N3 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 114.97 121.90 -6.93 0.70 N 83 1 OP1 B DG 12 ? ? P B DG 12 ? ? OP2 B DG 12 ? ? 107.75 119.60 -11.85 1.50 N 84 1 C2 B DG 12 ? ? N3 B DG 12 ? ? C4 B DG 12 ? ? 121.08 111.90 9.18 0.50 N 85 1 N3 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 118.96 128.60 -9.64 0.50 N 86 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 117.00 111.50 5.50 0.50 N 87 1 C4 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 101.57 110.80 -9.23 0.40 N 88 1 C5 B DG 12 ? ? N7 B DG 12 ? ? C8 B DG 12 ? ? 108.87 104.30 4.57 0.50 N 89 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 111.38 105.40 5.98 0.40 N 90 1 N3 B DG 12 ? ? C4 B DG 12 ? ? N9 B DG 12 ? ? 129.66 126.00 3.66 0.60 N 91 1 C6 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 139.16 130.40 8.76 0.60 N 92 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 120.22 128.60 -8.38 0.60 N 93 1 OP1 B DA 13 ? ? P B DA 13 ? ? OP2 B DA 13 ? ? 107.71 119.60 -11.89 1.50 N 94 1 C6 B DA 13 ? ? N1 B DA 13 ? ? C2 B DA 13 ? ? 122.58 118.60 3.98 0.60 N 95 1 N1 B DA 13 ? ? C2 B DA 13 ? ? N3 B DA 13 ? ? 121.51 129.30 -7.79 0.50 N 96 1 C2 B DA 13 ? ? N3 B DA 13 ? ? C4 B DA 13 ? ? 117.90 110.60 7.30 0.50 N 97 1 N3 B DA 13 ? ? C4 B DA 13 ? ? C5 B DA 13 ? ? 121.24 126.80 -5.56 0.70 N 98 1 C4 B DA 13 ? ? C5 B DA 13 ? ? C6 B DA 13 ? ? 120.72 117.00 3.72 0.50 N 99 1 C4 B DA 13 ? ? C5 B DA 13 ? ? N7 B DA 13 ? ? 105.63 110.70 -5.07 0.50 N 100 1 C5 B DA 13 ? ? N7 B DA 13 ? ? C8 B DA 13 ? ? 109.45 103.90 5.55 0.50 N 101 1 N3 B DA 13 ? ? C4 B DA 13 ? ? N9 B DA 13 ? ? 132.62 127.40 5.22 0.80 N 102 1 OP1 B DC 14 ? ? P B DC 14 ? ? OP2 B DC 14 ? ? 107.94 119.60 -11.66 1.50 N 103 1 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? "C2'" B DC 14 ? ? 98.34 105.90 -7.56 0.80 N 104 1 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.55 108.30 2.25 0.30 N 105 1 N3 B DC 14 ? ? C4 B DC 14 ? ? C5 B DC 14 ? ? 117.25 121.90 -4.65 0.40 N 106 1 C4 B DC 14 ? ? C5 B DC 14 ? ? C6 B DC 14 ? ? 120.53 117.40 3.13 0.50 N 107 1 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 124.50 118.90 5.60 0.60 N 108 1 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 114.47 121.90 -7.43 0.70 N 109 1 N3 B DC 14 ? ? C4 B DC 14 ? ? N4 B DC 14 ? ? 122.45 118.00 4.45 0.70 N 110 1 "C3'" B DC 14 ? ? "O3'" B DC 14 ? ? P B DT 15 ? ? 129.83 119.70 10.13 1.20 Y 111 1 OP1 B DT 15 ? ? P B DT 15 ? ? OP2 B DT 15 ? ? 107.71 119.60 -11.89 1.50 N 112 1 N1 B DT 15 ? ? C2 B DT 15 ? ? N3 B DT 15 ? ? 118.91 114.60 4.31 0.60 N 113 1 C2 B DT 15 ? ? N3 B DT 15 ? ? C4 B DT 15 ? ? 122.73 127.20 -4.47 0.60 N 114 1 C5 B DT 15 ? ? C4 B DT 15 ? ? O4 B DT 15 ? ? 120.39 124.90 -4.51 0.70 N 115 1 OP1 B DA 16 ? ? P B DA 16 ? ? OP2 B DA 16 ? ? 107.67 119.60 -11.93 1.50 N 116 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? "C2'" B DA 16 ? ? 99.16 105.90 -6.74 0.80 N 117 1 N1 B DA 16 ? ? C2 B DA 16 ? ? N3 B DA 16 ? ? 121.75 129.30 -7.55 0.50 N 118 1 C2 B DA 16 ? ? N3 B DA 16 ? ? C4 B DA 16 ? ? 118.03 110.60 7.43 0.50 N 119 1 N3 B DA 16 ? ? C4 B DA 16 ? ? C5 B DA 16 ? ? 121.02 126.80 -5.78 0.70 N 120 1 C4 B DA 16 ? ? C5 B DA 16 ? ? C6 B DA 16 ? ? 120.64 117.00 3.64 0.50 N 121 1 C4 B DA 16 ? ? C5 B DA 16 ? ? N7 B DA 16 ? ? 105.88 110.70 -4.82 0.50 N 122 1 C5 B DA 16 ? ? N7 B DA 16 ? ? C8 B DA 16 ? ? 109.16 103.90 5.26 0.50 N 123 1 N3 B DA 16 ? ? C4 B DA 16 ? ? N9 B DA 16 ? ? 132.85 127.40 5.45 0.80 N 124 1 "C3'" B DA 16 ? ? "O3'" B DA 16 ? ? P B DG 17 ? ? 129.13 119.70 9.43 1.20 Y 125 1 OP1 B DG 17 ? ? P B DG 17 ? ? OP2 B DG 17 ? ? 107.85 119.60 -11.75 1.50 N 126 1 C2 B DG 17 ? ? N3 B DG 17 ? ? C4 B DG 17 ? ? 120.97 111.90 9.07 0.50 N 127 1 N3 B DG 17 ? ? C4 B DG 17 ? ? C5 B DG 17 ? ? 119.07 128.60 -9.53 0.50 N 128 1 C5 B DG 17 ? ? C6 B DG 17 ? ? N1 B DG 17 ? ? 117.01 111.50 5.51 0.50 N 129 1 C4 B DG 17 ? ? C5 B DG 17 ? ? N7 B DG 17 ? ? 101.67 110.80 -9.13 0.40 N 130 1 C5 B DG 17 ? ? N7 B DG 17 ? ? C8 B DG 17 ? ? 108.59 104.30 4.29 0.50 N 131 1 N9 B DG 17 ? ? C4 B DG 17 ? ? C5 B DG 17 ? ? 111.19 105.40 5.79 0.40 N 132 1 N3 B DG 17 ? ? C4 B DG 17 ? ? N9 B DG 17 ? ? 129.73 126.00 3.73 0.60 N 133 1 C6 B DG 17 ? ? C5 B DG 17 ? ? N7 B DG 17 ? ? 139.18 130.40 8.78 0.60 N 134 1 C5 B DG 17 ? ? C6 B DG 17 ? ? O6 B DG 17 ? ? 120.66 128.60 -7.94 0.60 N 135 1 OP1 B DT 18 ? ? P B DT 18 ? ? OP2 B DT 18 ? ? 107.99 119.60 -11.61 1.50 N 136 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? "C2'" B DT 18 ? ? 100.80 105.90 -5.10 0.80 N 137 1 N1 B DT 18 ? ? C2 B DT 18 ? ? N3 B DT 18 ? ? 119.69 114.60 5.09 0.60 N 138 1 C2 B DT 18 ? ? N3 B DT 18 ? ? C4 B DT 18 ? ? 121.64 127.20 -5.56 0.60 N 139 1 C5 B DT 18 ? ? C4 B DT 18 ? ? O4 B DT 18 ? ? 119.42 124.90 -5.48 0.70 N 140 1 OP1 B DC 19 ? ? P B DC 19 ? ? OP2 B DC 19 ? ? 107.31 119.60 -12.29 1.50 N 141 1 N3 B DC 19 ? ? C4 B DC 19 ? ? C5 B DC 19 ? ? 117.61 121.90 -4.29 0.40 N 142 1 N1 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 123.81 118.90 4.91 0.60 N 143 1 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 115.40 121.90 -6.50 0.70 N 144 1 N3 B DC 19 ? ? C4 B DC 19 ? ? N4 B DC 19 ? ? 122.25 118.00 4.25 0.70 N 145 1 OP1 B DG 20 ? ? P B DG 20 ? ? OP2 B DG 20 ? ? 107.75 119.60 -11.85 1.50 N 146 1 C2 B DG 20 ? ? N3 B DG 20 ? ? C4 B DG 20 ? ? 120.78 111.90 8.88 0.50 N 147 1 N3 B DG 20 ? ? C4 B DG 20 ? ? C5 B DG 20 ? ? 119.54 128.60 -9.06 0.50 N 148 1 C5 B DG 20 ? ? C6 B DG 20 ? ? N1 B DG 20 ? ? 116.61 111.50 5.11 0.50 N 149 1 C4 B DG 20 ? ? C5 B DG 20 ? ? N7 B DG 20 ? ? 101.60 110.80 -9.20 0.40 N 150 1 C5 B DG 20 ? ? N7 B DG 20 ? ? C8 B DG 20 ? ? 108.83 104.30 4.53 0.50 N 151 1 N9 B DG 20 ? ? C4 B DG 20 ? ? C5 B DG 20 ? ? 111.27 105.40 5.87 0.40 N 152 1 C6 B DG 20 ? ? C5 B DG 20 ? ? N7 B DG 20 ? ? 139.40 130.40 9.00 0.60 N 153 1 C5 B DG 20 ? ? C6 B DG 20 ? ? O6 B DG 20 ? ? 120.60 128.60 -8.00 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 9 ? ? 0.069 'SIDE CHAIN' 2 1 DA B 16 ? ? 0.077 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 1RN9 _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1RN9 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2.4mM DNA Duplex, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D TOCSY' 1 2 1 '2D NOESY' 1 3 1 DQF-COSY 1 4 1 '2D ROESY' 1 5 1 'P-H COSY' 1 # _pdbx_nmr_refine.entry_id 1RN9 _pdbx_nmr_refine.method 'Restrained Molecular Dynamics' _pdbx_nmr_refine.details '514 NOE restraints defined for the decamer duplex' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement SYBYL 6.3 'TRIPOS INC.' 1 'iterative matrix relaxation' MARDIGRAS 1.0 'TRIPOS INC.' 2 collection XwinNMR 3.0 Bruker 3 collection VNMR 6 Varian 4 'data analysis' Sparky 3 'Goddard & Kneller' 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1RN9 'double helix' 1RN9 'b-form double helix' 1RN9 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.177 -0.373 -0.445 6.616 -10.048 -0.364 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DG 2 1_555 B DC 9 1_555 -0.163 -0.321 0.554 26.331 -1.620 -1.739 2 A_DG2:DC19_B A 2 ? B 19 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 -1.293 -0.342 1.662 1.670 -11.744 10.974 3 A_DA3:DT18_B A 3 ? B 18 ? ? 1 1 A DC 4 1_555 B DG 7 1_555 0.114 -0.558 1.050 -3.281 -9.573 -5.946 4 A_DC4:DG17_B A 4 ? B 17 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 0.120 -0.303 -0.076 10.050 -15.113 1.976 5 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 -0.082 -0.392 0.496 1.765 -6.554 -1.644 6 A_DA6:DT15_B A 6 ? B 15 ? 20 1 1 A DG 7 1_555 B DC 4 1_555 0.047 -0.513 -0.764 3.167 22.041 -8.632 7 A_DG7:DC14_B A 7 ? B 14 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 -0.150 -0.361 -0.363 0.869 6.819 -2.581 8 A_DT8:DA13_B A 8 ? B 13 ? 20 1 1 A DC 9 1_555 B DG 2 1_555 0.100 -0.319 -0.086 -3.561 1.880 -2.485 9 A_DC9:DG12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.334 -0.472 -0.034 17.439 -13.595 1.557 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DG 2 1_555 B DC 9 1_555 -0.320 0.761 2.843 -2.617 12.541 31.260 -0.562 0.161 2.941 22.144 4.622 33.723 1 AA_DC1DG2:DC19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DG 2 1_555 B DC 9 1_555 A DA 3 1_555 B DT 8 1_555 1.240 -1.060 4.334 -4.663 11.149 32.956 -3.858 -2.937 3.595 18.879 7.896 35.044 2 AA_DG2DA3:DT18DC19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DA 3 1_555 B DT 8 1_555 A DC 4 1_555 B DG 7 1_555 -0.558 -1.334 3.251 2.579 -3.794 34.295 -1.653 1.341 3.326 -6.398 -4.350 34.591 3 AA_DA3DC4:DG17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DC 4 1_555 B DG 7 1_555 A DT 5 1_555 B DA 6 1_555 0.638 -0.657 2.547 11.243 -10.512 38.793 0.003 0.094 2.706 -15.122 -16.173 41.625 4 AA_DC4DT5:DA16DG17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 -0.302 -1.623 2.701 -7.188 13.061 37.310 -3.498 -0.181 2.063 19.490 10.726 40.080 5 AA_DT5DA6:DT15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DA 6 1_555 B DT 5 1_555 A DG 7 1_555 B DC 4 1_555 0.068 -1.545 3.476 4.096 -16.989 34.151 0.161 0.504 3.789 -26.859 -6.476 38.243 6 AA_DA6DG7:DC14DT15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DG 7 1_555 B DC 4 1_555 A DT 8 1_555 B DA 3 1_555 -0.016 -2.208 3.361 -1.317 -4.662 28.887 -3.278 -0.275 3.661 -9.263 2.616 29.281 7 AA_DG7DT8:DA13DC14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DT 8 1_555 B DA 3 1_555 A DC 9 1_555 B DG 2 1_555 -0.749 -1.428 3.124 -1.086 -0.972 38.716 -2.038 1.000 3.177 -1.466 1.637 38.743 8 AA_DT8DC9:DG12DA13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DC 9 1_555 B DG 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.365 0.827 2.757 -1.852 11.543 31.808 -0.240 0.360 2.891 20.227 3.246 33.837 9 AA_DC9DG10:DC11DG12_BB A 9 ? B 12 ? A 10 ? B 11 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 800 ? 2 INOVA Varian 600 ? 3 AVANCE Bruker 600 ? 4 AMX Bruker 400 ? # _atom_sites.entry_id 1RN9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_