data_1RNG # _entry.id 1RNG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RNG pdb_00001rng 10.2210/pdb1rng/pdb WWPDB D_1000176136 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-12-07 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RNG _pdbx_database_status.recvd_initial_deposition_date 1995-09-05 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jucker, F.M.' 1 'Pardi, A.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Solution structure of the CUUG hairpin loop: a novel RNA tetraloop motif.' Biochemistry 34 14416 14427 1995 BICHAW US 0006-2960 0033 ? 7578046 10.1021/bi00044a019 1 ;Architecture of Ribosomal RNA: Constraints on the Sequence of "Tetra-Loops" ; Proc.Natl.Acad.Sci.USA 87 8567 ? 1990 PNASA6 US 0027-8424 0040 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jucker, F.M.' 1 ? primary 'Pardi, A.' 2 ? 1 'Woese, C.R.' 3 ? 1 'Winker, S.' 4 ? 1 'Gutell, R.R.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;RNA (5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)-3') ; _entity.formula_weight 3820.296 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_keywords.entity_id 1 _entity_keywords.text 'RIBONUCLEIC ACID' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGCUUGCGUC _entity_poly.pdbx_seq_one_letter_code_can GGCGCUUGCGUC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 C n 1 6 U n 1 7 U n 1 8 G n 1 9 C n 1 10 G n 1 11 U n 1 12 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'OLIGONUCLEOTIDE MADE BY IN VITRO TRANSCRIPTION' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # _cell.entry_id 1RNG _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RNG _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1RNG _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1RNG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1RNG _struct.title 'SOLUTION STRUCTURE OF THE CUUG HAIRPIN: A NOVEL RNA TETRALOOP MOTIF' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RNG _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, TETRALOOP' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1RNG _struct_ref.pdbx_db_accession 1RNG _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1RNG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1RNG _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 12 N3 ? ? A G 1 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 12 O2 ? ? A G 1 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 12 N4 ? ? A G 1 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 11 O2 ? ? A G 2 A U 11 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 11 N3 ? ? A G 2 A U 11 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 10 N1 ? ? A C 3 A G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 10 O6 ? ? A C 3 A G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 10 N2 ? ? A C 3 A G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 9 N3 ? ? A G 4 A C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 9 O2 ? ? A G 4 A C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 9 N4 ? ? A G 4 A C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 8 N1 ? ? A C 5 A G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 8 O6 ? ? A C 5 A G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 8 N2 ? ? A C 5 A G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO2'" A U 6 ? ? O2 A U 7 ? ? 1.39 2 1 "HO2'" A G 4 ? ? "O4'" A C 5 ? ? 1.41 3 1 "HO5'" A G 1 ? ? OP2 A G 2 ? ? 1.44 4 1 "HO2'" A G 8 ? ? OP2 A C 9 ? ? 1.44 5 1 H1 A G 2 ? ? O2 A U 11 ? ? 1.49 6 1 "HO2'" A C 5 ? ? "O5'" A U 6 ? ? 1.50 7 1 O6 A G 2 ? ? H3 A U 11 ? ? 1.60 8 2 "HO2'" A U 11 ? ? "O5'" A C 12 ? ? 1.44 9 2 O6 A G 2 ? ? H3 A U 11 ? ? 1.53 10 2 "HO2'" A G 4 ? ? "O5'" A C 5 ? ? 1.53 11 2 "HO5'" A G 1 ? ? OP2 A G 2 ? ? 1.53 12 2 "HO2'" A C 9 ? ? OP1 A G 10 ? ? 1.53 13 2 H1 A G 2 ? ? O2 A U 11 ? ? 1.53 14 2 "HO2'" A C 5 ? ? "O5'" A U 6 ? ? 1.57 15 2 "HO2'" A G 8 ? ? "O4'" A C 9 ? ? 1.57 16 2 "HO2'" A G 2 ? ? "O5'" A C 3 ? ? 1.57 17 3 H1 A G 2 ? ? O2 A U 11 ? ? 1.46 18 3 "HO2'" A C 5 ? ? "O5'" A U 6 ? ? 1.49 19 3 "HO2'" A C 3 ? ? "O5'" A G 4 ? ? 1.51 20 4 "HO5'" A G 1 ? ? OP2 A G 2 ? ? 1.41 21 4 H1 A G 2 ? ? O2 A U 11 ? ? 1.51 22 4 "HO2'" A C 5 ? ? "O5'" A U 6 ? ? 1.51 23 4 H3 A U 6 ? ? O2 A C 9 ? ? 1.56 24 4 "HO2'" A G 4 ? ? OP1 A C 5 ? ? 1.56 25 4 "HO2'" A U 7 ? ? "O4'" A G 8 ? ? 1.58 26 5 "HO2'" A C 5 ? ? "O5'" A U 6 ? ? 1.39 27 5 "HO5'" A G 1 ? ? OP2 A G 2 ? ? 1.40 28 5 "HO2'" A G 8 ? ? OP2 A C 9 ? ? 1.44 29 5 H1 A G 2 ? ? O2 A U 11 ? ? 1.49 30 5 H21 A G 1 ? ? O2 A C 12 ? ? 1.57 31 5 "HO2'" A G 4 ? ? "O5'" A C 5 ? ? 1.58 32 5 O6 A G 2 ? ? H3 A U 11 ? ? 1.60 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.69 113.10 4.59 0.50 N 2 1 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.66 106.40 -2.74 0.40 N 3 1 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.66 113.10 4.56 0.50 N 4 1 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.76 106.40 -2.64 0.40 N 5 1 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.54 113.10 4.44 0.50 N 6 1 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.80 106.40 -2.60 0.40 N 7 1 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 117.52 113.10 4.42 0.50 N 8 1 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.76 106.40 -2.64 0.40 N 9 1 N7 A G 10 ? ? C8 A G 10 ? ? N9 A G 10 ? ? 117.59 113.10 4.49 0.50 N 10 1 C8 A G 10 ? ? N9 A G 10 ? ? C4 A G 10 ? ? 103.77 106.40 -2.63 0.40 N 11 2 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.73 113.10 4.63 0.50 N 12 2 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.67 106.40 -2.73 0.40 N 13 2 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.49 113.10 4.39 0.50 N 14 2 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.78 106.40 -2.62 0.40 N 15 2 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.71 113.10 4.61 0.50 N 16 2 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.65 106.40 -2.75 0.40 N 17 2 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 117.62 113.10 4.52 0.50 N 18 2 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.66 106.40 -2.74 0.40 N 19 2 N7 A G 10 ? ? C8 A G 10 ? ? N9 A G 10 ? ? 117.56 113.10 4.46 0.50 N 20 2 C8 A G 10 ? ? N9 A G 10 ? ? C4 A G 10 ? ? 103.69 106.40 -2.71 0.40 N 21 3 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.77 113.10 4.67 0.50 N 22 3 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.68 106.40 -2.72 0.40 N 23 3 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.76 113.10 4.66 0.50 N 24 3 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.69 106.40 -2.71 0.40 N 25 3 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.84 113.10 4.74 0.50 N 26 3 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.70 106.40 -2.70 0.40 N 27 3 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 117.43 113.10 4.33 0.50 N 28 3 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.76 106.40 -2.64 0.40 N 29 3 N7 A G 10 ? ? C8 A G 10 ? ? N9 A G 10 ? ? 117.64 113.10 4.54 0.50 N 30 3 C8 A G 10 ? ? N9 A G 10 ? ? C4 A G 10 ? ? 103.80 106.40 -2.60 0.40 N 31 4 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.72 113.10 4.62 0.50 N 32 4 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.65 106.40 -2.75 0.40 N 33 4 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.63 113.10 4.53 0.50 N 34 4 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.70 106.40 -2.70 0.40 N 35 4 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.79 113.10 4.69 0.50 N 36 4 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.71 106.40 -2.69 0.40 N 37 4 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 117.44 113.10 4.34 0.50 N 38 4 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.81 106.40 -2.59 0.40 N 39 4 N7 A G 10 ? ? C8 A G 10 ? ? N9 A G 10 ? ? 117.66 113.10 4.56 0.50 N 40 4 C8 A G 10 ? ? N9 A G 10 ? ? C4 A G 10 ? ? 103.67 106.40 -2.73 0.40 N 41 5 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.67 113.10 4.57 0.50 N 42 5 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.73 106.40 -2.67 0.40 N 43 5 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.64 113.10 4.54 0.50 N 44 5 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.73 106.40 -2.67 0.40 N 45 5 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.61 113.10 4.51 0.50 N 46 5 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.63 106.40 -2.77 0.40 N 47 5 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 117.57 113.10 4.47 0.50 N 48 5 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.82 106.40 -2.58 0.40 N 49 5 N7 A G 10 ? ? C8 A G 10 ? ? N9 A G 10 ? ? 117.62 113.10 4.52 0.50 N 50 5 C8 A G 10 ? ? N9 A G 10 ? ? C4 A G 10 ? ? 103.68 106.40 -2.72 0.40 N # _pdbx_nmr_ensemble.entry_id 1RNG _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_refine.entry_id 1RNG _pdbx_nmr_refine.method ? _pdbx_nmr_refine.details 'NUCLEIC ACID PARAMETER SET.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version ? _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors BRUNGER _pdbx_nmr_software.ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 U OP3 O N N 74 U P P N N 75 U OP1 O N N 76 U OP2 O N N 77 U "O5'" O N N 78 U "C5'" C N N 79 U "C4'" C N R 80 U "O4'" O N N 81 U "C3'" C N S 82 U "O3'" O N N 83 U "C2'" C N R 84 U "O2'" O N N 85 U "C1'" C N R 86 U N1 N N N 87 U C2 C N N 88 U O2 O N N 89 U N3 N N N 90 U C4 C N N 91 U O4 O N N 92 U C5 C N N 93 U C6 C N N 94 U HOP3 H N N 95 U HOP2 H N N 96 U "H5'" H N N 97 U "H5''" H N N 98 U "H4'" H N N 99 U "H3'" H N N 100 U "HO3'" H N N 101 U "H2'" H N N 102 U "HO2'" H N N 103 U "H1'" H N N 104 U H3 H N N 105 U H5 H N N 106 U H6 H N N 107 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 U OP3 P sing N N 77 U OP3 HOP3 sing N N 78 U P OP1 doub N N 79 U P OP2 sing N N 80 U P "O5'" sing N N 81 U OP2 HOP2 sing N N 82 U "O5'" "C5'" sing N N 83 U "C5'" "C4'" sing N N 84 U "C5'" "H5'" sing N N 85 U "C5'" "H5''" sing N N 86 U "C4'" "O4'" sing N N 87 U "C4'" "C3'" sing N N 88 U "C4'" "H4'" sing N N 89 U "O4'" "C1'" sing N N 90 U "C3'" "O3'" sing N N 91 U "C3'" "C2'" sing N N 92 U "C3'" "H3'" sing N N 93 U "O3'" "HO3'" sing N N 94 U "C2'" "O2'" sing N N 95 U "C2'" "C1'" sing N N 96 U "C2'" "H2'" sing N N 97 U "O2'" "HO2'" sing N N 98 U "C1'" N1 sing N N 99 U "C1'" "H1'" sing N N 100 U N1 C2 sing N N 101 U N1 C6 sing N N 102 U C2 O2 doub N N 103 U C2 N3 sing N N 104 U N3 C4 sing N N 105 U N3 H3 sing N N 106 U C4 O4 doub N N 107 U C4 C5 sing N N 108 U C5 C6 doub N N 109 U C5 H5 sing N N 110 U C6 H6 sing N N 111 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1RNG 'double helix' 1RNG 'a-form double helix' 1RNG tetraloop 1RNG 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 12 1_555 -0.306 -0.358 -0.095 11.652 4.467 -1.667 1 A_G1:C12_A A 1 ? A 12 ? 19 1 1 A G 2 1_555 A U 11 1_555 -2.402 -0.827 -0.047 -2.677 -19.295 2.519 2 A_G2:U11_A A 2 ? A 11 ? 28 1 1 A C 3 1_555 A G 10 1_555 0.386 -0.436 -0.116 -7.644 -22.759 4.593 3 A_C3:G10_A A 3 ? A 10 ? 19 1 1 A G 4 1_555 A C 9 1_555 0.186 -0.244 -0.170 0.547 -6.096 0.457 4 A_G4:C9_A A 4 ? A 9 ? 19 1 1 A C 5 1_555 A G 8 1_555 0.554 -0.445 0.067 9.854 9.039 2.643 5 A_C5:G8_A A 5 ? A 8 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 12 1_555 A G 2 1_555 A U 11 1_555 0.930 -1.960 3.499 -4.351 4.510 29.903 -4.622 -2.636 3.016 8.621 8.317 30.538 1 AA_G1G2:U11C12_AA A 1 ? A 12 ? A 2 ? A 11 ? 1 A G 2 1_555 A U 11 1_555 A C 3 1_555 A G 10 1_555 -1.364 -0.880 3.321 -1.839 -5.282 52.902 -0.634 1.403 3.430 -5.911 2.057 53.176 2 AA_G2C3:G10U11_AA A 2 ? A 11 ? A 3 ? A 10 ? 1 A C 3 1_555 A G 10 1_555 A G 4 1_555 A C 9 1_555 -0.932 -0.482 2.919 -1.765 24.113 13.249 -5.919 1.600 1.055 61.527 4.504 27.522 3 AA_C3G4:C9G10_AA A 3 ? A 10 ? A 4 ? A 9 ? 1 A G 4 1_555 A C 9 1_555 A C 5 1_555 A G 8 1_555 1.430 0.091 3.135 3.834 2.784 35.901 -0.238 -1.772 3.263 4.492 -6.187 36.202 4 AA_G4C5:G8C9_AA A 4 ? A 9 ? A 5 ? A 8 ? # _atom_sites.entry_id 1RNG _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_