data_1RNM # _entry.id 1RNM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1RNM WWPDB D_1000176140 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RNM _pdbx_database_status.recvd_initial_deposition_date 1995-11-08 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fedorov, A.A.' 1 'Almo, S.C.' 2 # _citation.id primary _citation.title 'Structure of the Crystalline Complex of Bovine Pancreatic Ribonuclease A and Cytidylic Acid' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fedorov, A.A.' 1 ? primary 'Josef-Mccarthy, D.' 2 ? primary 'Graf, I.' 3 ? primary 'Anguelova, D.' 4 ? primary 'Fedorov, E.V.' 5 ? primary 'Almo, S.C.' 6 ? # _cell.entry_id 1RNM _cell.length_a 65.630 _cell.length_b 65.630 _cell.length_c 65.380 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RNM _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'RIBONUCLEASE A' 13708.326 1 3.1.27.5 ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 non-polymer syn "CYTIDINE-5'-MONOPHOSPHATE" 323.197 1 ? ? ? ? 4 water nat water 18.015 80 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;RNASE A/5'-CMP ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV ; _entity_poly.pdbx_seq_one_letter_code_can ;KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV ; _entity_poly.pdbx_strand_id E _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 GLU n 1 3 THR n 1 4 ALA n 1 5 ALA n 1 6 ALA n 1 7 LYS n 1 8 PHE n 1 9 GLU n 1 10 ARG n 1 11 GLN n 1 12 HIS n 1 13 MET n 1 14 ASP n 1 15 SER n 1 16 SER n 1 17 THR n 1 18 SER n 1 19 ALA n 1 20 ALA n 1 21 SER n 1 22 SER n 1 23 SER n 1 24 ASN n 1 25 TYR n 1 26 CYS n 1 27 ASN n 1 28 GLN n 1 29 MET n 1 30 MET n 1 31 LYS n 1 32 SER n 1 33 ARG n 1 34 ASN n 1 35 LEU n 1 36 THR n 1 37 LYS n 1 38 ASP n 1 39 ARG n 1 40 CYS n 1 41 LYS n 1 42 PRO n 1 43 VAL n 1 44 ASN n 1 45 THR n 1 46 PHE n 1 47 VAL n 1 48 HIS n 1 49 GLU n 1 50 SER n 1 51 LEU n 1 52 ALA n 1 53 ASP n 1 54 VAL n 1 55 GLN n 1 56 ALA n 1 57 VAL n 1 58 CYS n 1 59 SER n 1 60 GLN n 1 61 LYS n 1 62 ASN n 1 63 VAL n 1 64 ALA n 1 65 CYS n 1 66 LYS n 1 67 ASN n 1 68 GLY n 1 69 GLN n 1 70 THR n 1 71 ASN n 1 72 CYS n 1 73 TYR n 1 74 GLN n 1 75 SER n 1 76 TYR n 1 77 SER n 1 78 THR n 1 79 MET n 1 80 SER n 1 81 ILE n 1 82 THR n 1 83 ASP n 1 84 CYS n 1 85 ARG n 1 86 GLU n 1 87 THR n 1 88 GLY n 1 89 SER n 1 90 SER n 1 91 LYS n 1 92 TYR n 1 93 PRO n 1 94 ASN n 1 95 CYS n 1 96 ALA n 1 97 TYR n 1 98 LYS n 1 99 THR n 1 100 THR n 1 101 GLN n 1 102 ALA n 1 103 ASN n 1 104 LYS n 1 105 HIS n 1 106 ILE n 1 107 ILE n 1 108 VAL n 1 109 ALA n 1 110 CYS n 1 111 GLU n 1 112 GLY n 1 113 ASN n 1 114 PRO n 1 115 TYR n 1 116 VAL n 1 117 PRO n 1 118 VAL n 1 119 HIS n 1 120 PHE n 1 121 ASP n 1 122 ALA n 1 123 SER n 1 124 VAL n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name cattle _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus Bos _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ PANCREAS _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RNAS1_BOVIN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P61823 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MALKSLVLLSLLVLVLLLVRVQPSLGKETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADV QAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1RNM _struct_ref_seq.pdbx_strand_id E _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 124 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P61823 _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 150 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 124 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C5P non-polymer . "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1RNM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_percent_sol 58.51 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 5.5' # _diffrn.id 1 _diffrn.ambient_temp 290 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date 1992 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1RNM _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 9.6 _reflns.d_resolution_high 2.0 _reflns.number_obs 8914 _reflns.number_all ? _reflns.percent_possible_obs 78.3 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 41.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.58 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.09 _reflns_shell.percent_possible_all 51.2 _reflns_shell.Rmerge_I_obs 0.127 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 9.6 _reflns_shell.pdbx_redundancy 1.68 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1RNM _refine.ls_number_reflns_obs 8840 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8. _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.158 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.158 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 951 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 80 _refine_hist.number_atoms_total 1067 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 8. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.47 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1RNM _struct.title ;RIBONUCLEASE A COMPLEX WITH CYTIDYLIC ACID (5'CMP) CRYSTALLIZED FROM 80% AMMONIUM SULPHATE ; _struct.pdbx_descriptor ;RIBONUCLEASE A, CYTIDINE-5'-MONOPHOSPHATE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RNM _struct_keywords.pdbx_keywords 'COMPLEX (HYDROLASE/CYTIDYLIC ACID)' _struct_keywords.text 'COMPLEX (HYDROLASE-CYTIDYLIC ACID), COMPLEX (HYDROLASE-CYTIDYLIC ACID) complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 H1 THR A 3 ? MET A 13 ? THR E 3 MET E 13 1 ? 11 HELX_P HELX_P2 H2 ASN A 24 ? ASN A 34 ? ASN E 24 ASN E 34 1 'RESIDUE 34 IN 3/10 CONFIG' 11 HELX_P HELX_P3 H3 SER A 50 ? GLN A 60 ? SER E 50 GLN E 60 1 'RESIDUES 56-60 IN 3/10 CONFIG' 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 84 SG ? ? E CYS 26 E CYS 84 1_555 ? ? ? ? ? ? ? 2.026 ? disulf2 disulf ? ? A CYS 40 SG ? ? ? 1_555 A CYS 95 SG ? ? E CYS 40 E CYS 95 1_555 ? ? ? ? ? ? ? 1.970 ? disulf3 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 110 SG ? ? E CYS 58 E CYS 110 1_555 ? ? ? ? ? ? ? 1.999 ? disulf4 disulf ? ? A CYS 65 SG ? ? ? 1_555 A CYS 72 SG ? ? E CYS 65 E CYS 72 1_555 ? ? ? ? ? ? ? 2.041 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 92 A . ? TYR 92 E PRO 93 A ? PRO 93 E 1 0.85 2 ASN 113 A . ? ASN 113 E PRO 114 A ? PRO 114 E 1 1.53 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1A ? 3 ? S1B ? 3 ? S2A ? 4 ? S2B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense S1A 1 2 ? anti-parallel S1A 2 3 ? anti-parallel S1B 1 2 ? anti-parallel S1B 2 3 ? anti-parallel S2A 1 2 ? anti-parallel S2A 2 3 ? anti-parallel S2A 3 4 ? anti-parallel S2B 1 2 ? anti-parallel S2B 2 3 ? anti-parallel S2B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1A 1 LYS A 41 ? HIS A 48 ? LYS E 41 HIS E 48 S1A 2 MET A 79 ? THR A 87 ? MET E 79 THR E 87 S1A 3 ASN A 94 ? LYS A 104 ? ASN E 94 LYS E 104 S1B 1 LYS A 41 ? HIS A 48 ? LYS E 41 HIS E 48 S1B 2 SER A 90 ? LYS A 91 ? SER E 90 LYS E 91 S1B 3 ASN A 94 ? LYS A 104 ? ASN E 94 LYS E 104 S2A 1 LYS A 61 ? ALA A 64 ? LYS E 61 ALA E 64 S2A 2 ASN A 71 ? SER A 75 ? ASN E 71 SER E 75 S2A 3 HIS A 105 ? ASN A 113 ? HIS E 105 ASN E 113 S2A 4 PRO A 114 ? HIS A 119 ? PRO E 114 HIS E 119 S2B 1 LYS A 61 ? ALA A 64 ? LYS E 61 ALA E 64 S2B 2 ASN A 71 ? SER A 75 ? ASN E 71 SER E 75 S2B 3 HIS A 105 ? ASN A 113 ? HIS E 105 ASN E 113 S2B 4 ASP A 121 ? VAL A 124 ? ASP E 121 VAL E 124 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id S1A 1 2 O PRO A 42 ? O PRO E 42 N GLU A 86 ? N GLU E 86 S1A 2 3 N MET A 79 ? N MET E 79 O LYS A 104 ? O LYS E 104 S1B 2 3 N LYS A 91 ? N LYS E 91 O ASN A 94 ? O ASN E 94 S2A 1 2 N VAL A 63 ? N VAL E 63 O CYS A 72 ? O CYS E 72 S2A 2 3 N TYR A 73 ? N TYR E 73 O VAL A 108 ? O VAL E 108 S2A 3 4 N GLU A 111 ? N GLU E 111 O VAL A 116 ? O VAL E 116 S2B 1 2 N VAL A 63 ? N VAL E 63 O CYS A 72 ? O CYS E 72 S2B 2 3 N TYR A 73 ? N TYR E 73 O VAL A 108 ? O VAL E 108 S2B 3 4 O HIS A 105 ? O HIS E 105 N VAL A 124 ? N VAL E 124 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE SO4 E 125' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 E 126' AC3 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE SO4 E 127' AC4 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE C5P E 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 GLN A 11 ? GLN E 11 . ? 1_555 ? 2 AC1 9 HIS A 12 ? HIS E 12 . ? 1_555 ? 3 AC1 9 LYS A 41 ? LYS E 41 . ? 1_555 ? 4 AC1 9 VAL A 118 ? VAL E 118 . ? 1_555 ? 5 AC1 9 HIS A 119 ? HIS E 119 . ? 1_555 ? 6 AC1 9 PHE A 120 ? PHE E 120 . ? 1_555 ? 7 AC1 9 C5P E . ? C5P E 200 . ? 1_555 ? 8 AC1 9 HOH F . ? HOH E 219 . ? 1_555 ? 9 AC1 9 HOH F . ? HOH E 272 . ? 1_555 ? 10 AC2 4 SER A 23 ? SER E 23 . ? 1_555 ? 11 AC2 4 HOH F . ? HOH E 217 . ? 6_665 ? 12 AC2 4 HOH F . ? HOH E 246 . ? 6_665 ? 13 AC2 4 HOH F . ? HOH E 260 . ? 1_555 ? 14 AC3 10 LYS A 66 ? LYS E 66 . ? 1_555 ? 15 AC3 10 LYS A 66 ? LYS E 66 . ? 4_556 ? 16 AC3 10 ALA A 122 ? ALA E 122 . ? 1_555 ? 17 AC3 10 ALA A 122 ? ALA E 122 . ? 4_556 ? 18 AC3 10 SER A 123 ? SER E 123 . ? 1_555 ? 19 AC3 10 SER A 123 ? SER E 123 . ? 4_556 ? 20 AC3 10 C5P E . ? C5P E 200 . ? 4_556 ? 21 AC3 10 C5P E . ? C5P E 200 . ? 1_555 ? 22 AC3 10 HOH F . ? HOH E 253 . ? 4_556 ? 23 AC3 10 HOH F . ? HOH E 253 . ? 1_555 ? 24 AC4 11 HIS A 12 ? HIS E 12 . ? 1_555 ? 25 AC4 11 LYS A 41 ? LYS E 41 . ? 1_555 ? 26 AC4 11 VAL A 43 ? VAL E 43 . ? 1_555 ? 27 AC4 11 ASN A 44 ? ASN E 44 . ? 1_555 ? 28 AC4 11 THR A 45 ? THR E 45 . ? 1_555 ? 29 AC4 11 LYS A 66 ? LYS E 66 . ? 1_555 ? 30 AC4 11 PHE A 120 ? PHE E 120 . ? 1_555 ? 31 AC4 11 SO4 B . ? SO4 E 125 . ? 1_555 ? 32 AC4 11 SO4 D . ? SO4 E 127 . ? 4_556 ? 33 AC4 11 SO4 D . ? SO4 E 127 . ? 1_555 ? 34 AC4 11 HOH F . ? HOH E 247 . ? 1_555 ? # _database_PDB_matrix.entry_id 1RNM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RNM _atom_sites.fract_transf_matrix[1][1] 0.015237 _atom_sites.fract_transf_matrix[1][2] 0.008797 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017594 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015295 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_sites_footnote.id _atom_sites_footnote.text 1 'CIS PROLINE - PRO E 93' 2 'CIS PROLINE - PRO E 114' # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS E . n A 1 2 GLU 2 2 2 GLU GLU E . n A 1 3 THR 3 3 3 THR THR E . n A 1 4 ALA 4 4 4 ALA ALA E . n A 1 5 ALA 5 5 5 ALA ALA E . n A 1 6 ALA 6 6 6 ALA ALA E . n A 1 7 LYS 7 7 7 LYS LYS E . n A 1 8 PHE 8 8 8 PHE PHE E . n A 1 9 GLU 9 9 9 GLU GLU E . n A 1 10 ARG 10 10 10 ARG ARG E . n A 1 11 GLN 11 11 11 GLN GLN E . n A 1 12 HIS 12 12 12 HIS HIS E . n A 1 13 MET 13 13 13 MET MET E . n A 1 14 ASP 14 14 14 ASP ASP E . n A 1 15 SER 15 15 15 SER SER E . n A 1 16 SER 16 16 16 SER SER E . n A 1 17 THR 17 17 17 THR THR E . n A 1 18 SER 18 18 18 SER SER E . n A 1 19 ALA 19 19 19 ALA ALA E . n A 1 20 ALA 20 20 20 ALA ALA E . n A 1 21 SER 21 21 21 SER SER E . n A 1 22 SER 22 22 22 SER SER E . n A 1 23 SER 23 23 23 SER SER E . n A 1 24 ASN 24 24 24 ASN ASN E . n A 1 25 TYR 25 25 25 TYR TYR E . n A 1 26 CYS 26 26 26 CYS CYS E . n A 1 27 ASN 27 27 27 ASN ASN E . n A 1 28 GLN 28 28 28 GLN GLN E . n A 1 29 MET 29 29 29 MET MET E . n A 1 30 MET 30 30 30 MET MET E . n A 1 31 LYS 31 31 31 LYS LYS E . n A 1 32 SER 32 32 32 SER SER E . n A 1 33 ARG 33 33 33 ARG ARG E . n A 1 34 ASN 34 34 34 ASN ASN E . n A 1 35 LEU 35 35 35 LEU LEU E . n A 1 36 THR 36 36 36 THR THR E . n A 1 37 LYS 37 37 37 LYS LYS E . n A 1 38 ASP 38 38 38 ASP ASP E . n A 1 39 ARG 39 39 39 ARG ARG E . n A 1 40 CYS 40 40 40 CYS CYS E . n A 1 41 LYS 41 41 41 LYS LYS E . n A 1 42 PRO 42 42 42 PRO PRO E . n A 1 43 VAL 43 43 43 VAL VAL E . n A 1 44 ASN 44 44 44 ASN ASN E . n A 1 45 THR 45 45 45 THR THR E . n A 1 46 PHE 46 46 46 PHE PHE E . n A 1 47 VAL 47 47 47 VAL VAL E . n A 1 48 HIS 48 48 48 HIS HIS E . n A 1 49 GLU 49 49 49 GLU GLU E . n A 1 50 SER 50 50 50 SER SER E . n A 1 51 LEU 51 51 51 LEU LEU E . n A 1 52 ALA 52 52 52 ALA ALA E . n A 1 53 ASP 53 53 53 ASP ASP E . n A 1 54 VAL 54 54 54 VAL VAL E . n A 1 55 GLN 55 55 55 GLN GLN E . n A 1 56 ALA 56 56 56 ALA ALA E . n A 1 57 VAL 57 57 57 VAL VAL E . n A 1 58 CYS 58 58 58 CYS CYS E . n A 1 59 SER 59 59 59 SER SER E . n A 1 60 GLN 60 60 60 GLN GLN E . n A 1 61 LYS 61 61 61 LYS LYS E . n A 1 62 ASN 62 62 62 ASN ASN E . n A 1 63 VAL 63 63 63 VAL VAL E . n A 1 64 ALA 64 64 64 ALA ALA E . n A 1 65 CYS 65 65 65 CYS CYS E . n A 1 66 LYS 66 66 66 LYS LYS E . n A 1 67 ASN 67 67 67 ASN ASN E . n A 1 68 GLY 68 68 68 GLY GLY E . n A 1 69 GLN 69 69 69 GLN GLN E . n A 1 70 THR 70 70 70 THR THR E . n A 1 71 ASN 71 71 71 ASN ASN E . n A 1 72 CYS 72 72 72 CYS CYS E . n A 1 73 TYR 73 73 73 TYR TYR E . n A 1 74 GLN 74 74 74 GLN GLN E . n A 1 75 SER 75 75 75 SER SER E . n A 1 76 TYR 76 76 76 TYR TYR E . n A 1 77 SER 77 77 77 SER SER E . n A 1 78 THR 78 78 78 THR THR E . n A 1 79 MET 79 79 79 MET MET E . n A 1 80 SER 80 80 80 SER SER E . n A 1 81 ILE 81 81 81 ILE ILE E . n A 1 82 THR 82 82 82 THR THR E . n A 1 83 ASP 83 83 83 ASP ASP E . n A 1 84 CYS 84 84 84 CYS CYS E . n A 1 85 ARG 85 85 85 ARG ARG E . n A 1 86 GLU 86 86 86 GLU GLU E . n A 1 87 THR 87 87 87 THR THR E . n A 1 88 GLY 88 88 88 GLY GLY E . n A 1 89 SER 89 89 89 SER SER E . n A 1 90 SER 90 90 90 SER SER E . n A 1 91 LYS 91 91 91 LYS LYS E . n A 1 92 TYR 92 92 92 TYR TYR E . n A 1 93 PRO 93 93 93 PRO PRO E . n A 1 94 ASN 94 94 94 ASN ASN E . n A 1 95 CYS 95 95 95 CYS CYS E . n A 1 96 ALA 96 96 96 ALA ALA E . n A 1 97 TYR 97 97 97 TYR TYR E . n A 1 98 LYS 98 98 98 LYS LYS E . n A 1 99 THR 99 99 99 THR THR E . n A 1 100 THR 100 100 100 THR THR E . n A 1 101 GLN 101 101 101 GLN GLN E . n A 1 102 ALA 102 102 102 ALA ALA E . n A 1 103 ASN 103 103 103 ASN ASN E . n A 1 104 LYS 104 104 104 LYS LYS E . n A 1 105 HIS 105 105 105 HIS HIS E . n A 1 106 ILE 106 106 106 ILE ILE E . n A 1 107 ILE 107 107 107 ILE ILE E . n A 1 108 VAL 108 108 108 VAL VAL E . n A 1 109 ALA 109 109 109 ALA ALA E . n A 1 110 CYS 110 110 110 CYS CYS E . n A 1 111 GLU 111 111 111 GLU GLU E . n A 1 112 GLY 112 112 112 GLY GLY E . n A 1 113 ASN 113 113 113 ASN ASN E . n A 1 114 PRO 114 114 114 PRO PRO E . n A 1 115 TYR 115 115 115 TYR TYR E . n A 1 116 VAL 116 116 116 VAL VAL E . n A 1 117 PRO 117 117 117 PRO PRO E . n A 1 118 VAL 118 118 118 VAL VAL E . n A 1 119 HIS 119 119 119 HIS HIS E . n A 1 120 PHE 120 120 120 PHE PHE E . n A 1 121 ASP 121 121 121 ASP ASP E . n A 1 122 ALA 122 122 122 ALA ALA E . n A 1 123 SER 123 123 123 SER SER E . n A 1 124 VAL 124 124 124 VAL VAL E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 125 125 SO4 SO4 E . C 2 SO4 1 126 126 SO4 SO4 E . D 2 SO4 1 127 127 SO4 SO4 E . E 3 C5P 1 200 200 C5P C E . F 4 HOH 1 201 201 HOH HOH E . F 4 HOH 2 202 202 HOH HOH E . F 4 HOH 3 203 203 HOH HOH E . F 4 HOH 4 204 204 HOH HOH E . F 4 HOH 5 205 205 HOH HOH E . F 4 HOH 6 206 206 HOH HOH E . F 4 HOH 7 207 207 HOH HOH E . F 4 HOH 8 208 208 HOH HOH E . F 4 HOH 9 209 209 HOH HOH E . F 4 HOH 10 210 210 HOH HOH E . F 4 HOH 11 211 211 HOH HOH E . F 4 HOH 12 212 212 HOH HOH E . F 4 HOH 13 213 213 HOH HOH E . F 4 HOH 14 214 214 HOH HOH E . F 4 HOH 15 215 215 HOH HOH E . F 4 HOH 16 216 216 HOH HOH E . F 4 HOH 17 217 217 HOH HOH E . F 4 HOH 18 218 218 HOH HOH E . F 4 HOH 19 219 219 HOH HOH E . F 4 HOH 20 220 220 HOH HOH E . F 4 HOH 21 221 221 HOH HOH E . F 4 HOH 22 222 222 HOH HOH E . F 4 HOH 23 223 223 HOH HOH E . F 4 HOH 24 224 224 HOH HOH E . F 4 HOH 25 225 225 HOH HOH E . F 4 HOH 26 226 226 HOH HOH E . F 4 HOH 27 227 227 HOH HOH E . F 4 HOH 28 228 228 HOH HOH E . F 4 HOH 29 229 229 HOH HOH E . F 4 HOH 30 230 230 HOH HOH E . F 4 HOH 31 231 231 HOH HOH E . F 4 HOH 32 232 232 HOH HOH E . F 4 HOH 33 233 233 HOH HOH E . F 4 HOH 34 234 234 HOH HOH E . F 4 HOH 35 235 235 HOH HOH E . F 4 HOH 36 236 236 HOH HOH E . F 4 HOH 37 237 237 HOH HOH E . F 4 HOH 38 238 238 HOH HOH E . F 4 HOH 39 239 239 HOH HOH E . F 4 HOH 40 240 240 HOH HOH E . F 4 HOH 41 241 241 HOH HOH E . F 4 HOH 42 242 242 HOH HOH E . F 4 HOH 43 243 243 HOH HOH E . F 4 HOH 44 244 244 HOH HOH E . F 4 HOH 45 245 245 HOH HOH E . F 4 HOH 46 246 246 HOH HOH E . F 4 HOH 47 247 247 HOH HOH E . F 4 HOH 48 248 248 HOH HOH E . F 4 HOH 49 249 249 HOH HOH E . F 4 HOH 50 250 250 HOH HOH E . F 4 HOH 51 251 251 HOH HOH E . F 4 HOH 52 252 252 HOH HOH E . F 4 HOH 53 253 253 HOH HOH E . F 4 HOH 54 254 254 HOH HOH E . F 4 HOH 55 255 255 HOH HOH E . F 4 HOH 56 256 256 HOH HOH E . F 4 HOH 57 257 257 HOH HOH E . F 4 HOH 58 258 258 HOH HOH E . F 4 HOH 59 259 259 HOH HOH E . F 4 HOH 60 260 260 HOH HOH E . F 4 HOH 61 261 261 HOH HOH E . F 4 HOH 62 262 262 HOH HOH E . F 4 HOH 63 263 263 HOH HOH E . F 4 HOH 64 264 264 HOH HOH E . F 4 HOH 65 265 265 HOH HOH E . F 4 HOH 66 266 266 HOH HOH E . F 4 HOH 67 267 267 HOH HOH E . F 4 HOH 68 268 268 HOH HOH E . F 4 HOH 69 269 269 HOH HOH E . F 4 HOH 70 270 270 HOH HOH E . F 4 HOH 71 271 271 HOH HOH E . F 4 HOH 72 272 272 HOH HOH E . F 4 HOH 73 273 273 HOH HOH E . F 4 HOH 74 274 274 HOH HOH E . F 4 HOH 75 275 275 HOH HOH E . F 4 HOH 76 276 276 HOH HOH E . F 4 HOH 77 277 277 HOH HOH E . F 4 HOH 78 278 278 HOH HOH E . F 4 HOH 79 279 279 HOH HOH E . F 4 HOH 80 280 280 HOH HOH E . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 2 1,2 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 4400 ? 2 MORE -106 ? 2 'SSA (A^2)' 10990 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 65.3800000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id E _pdbx_struct_special_symmetry.auth_comp_id SO4 _pdbx_struct_special_symmetry.auth_seq_id 127 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id SO4 _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-04-03 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2019-08-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_software.classification' 4 5 'Structure model' '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 X-PLOR 'model building' . ? 2 PROFFT refinement . ? 3 X-PLOR refinement . ? 4 XDS 'data reduction' . ? 5 X-PLOR phasing . ? 6 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O2 E SO4 127 ? ? 1_555 O3 E SO4 127 ? ? 4_556 0.02 2 1 O1 E SO4 127 ? ? 1_555 O4 E SO4 127 ? ? 4_556 0.03 3 1 S E SO4 127 ? ? 1_555 O3 E SO4 127 ? ? 4_556 1.46 4 1 S E SO4 127 ? ? 1_555 O4 E SO4 127 ? ? 4_556 1.47 5 1 S E SO4 127 ? ? 1_555 O1 E SO4 127 ? ? 4_556 1.47 6 1 S E SO4 127 ? ? 1_555 O2 E SO4 127 ? ? 4_556 1.48 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 E _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 85 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 E _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 85 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 E _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 85 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.34 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.96 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS E 48 ? ? -104.60 66.92 2 1 GLN E 60 ? ? -104.79 -127.77 3 1 SER E 90 ? ? -36.42 136.63 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 "CYTIDINE-5'-MONOPHOSPHATE" C5P 4 water HOH #