HEADER NEUROPEPTIDE 11-JAN-96 1RON TITLE NMR SOLUTION STRUCTURE OF HUMAN NEUROPEPTIDE Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROPEPTIDE Y; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NPY; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 OTHER_DETAILS: SYNTHESIZED BY AUSPEP PTY. LTD., AUSTRALIA KEYWDS NEUROPEPTIDE, CLEAVAGE ON PAIR OF BASIC RESIDUES, AMIDATION, KEYWDS 2 NEUROMODULATOR EXPDTA SOLUTION NMR NUMMDL 26 AUTHOR S.A.MONKS,G.KARAGIANIS,G.J.HOWLETT,R.S.NORTON REVDAT 4 29-NOV-17 1RON 1 HELIX REVDAT 3 25-MAY-16 1RON 1 SOURCE VERSN REVDAT 2 24-FEB-09 1RON 1 VERSN REVDAT 1 17-AUG-96 1RON 0 JRNL AUTH S.A.MONKS,G.KARAGIANIS,G.J.HOWLETT,R.S.NORTON JRNL TITL SOLUTION STRUCTURE OF HUMAN NEUROPEPTIDE Y. JRNL REF J.BIOMOL.NMR V. 8 379 1996 JRNL REFN ISSN 0925-2738 JRNL PMID 9008359 JRNL DOI 10.1007/BF00228141 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.E.GRIMES,P.K.PALLAGHY,M.W.PENNINGTON,R.S.NORTON REMARK 1 TITL SOLUTION STRUCTURE OF SHK TOXIN, A NOVEL POTASSIUM CHANNEL REMARK 1 TITL 2 INHIBITOR FROM A SEA ANEMONE REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RON COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176164. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 3.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR 3.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 26 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 26 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 HIS A 26 NE2 HIS A 26 CD2 -0.067 REMARK 500 2 HIS A 26 NE2 HIS A 26 CD2 -0.066 REMARK 500 3 HIS A 26 NE2 HIS A 26 CD2 -0.067 REMARK 500 8 HIS A 26 NE2 HIS A 26 CD2 -0.067 REMARK 500 13 HIS A 26 NE2 HIS A 26 CD2 -0.066 REMARK 500 15 HIS A 26 NE2 HIS A 26 CD2 -0.067 REMARK 500 16 HIS A 26 NE2 HIS A 26 CD2 -0.066 REMARK 500 17 HIS A 26 NE2 HIS A 26 CD2 -0.069 REMARK 500 20 HIS A 26 NE2 HIS A 26 CD2 -0.066 REMARK 500 21 HIS A 26 NE2 HIS A 26 CD2 -0.066 REMARK 500 24 HIS A 26 NE2 HIS A 26 CD2 -0.066 REMARK 500 26 HIS A 26 NE2 HIS A 26 CD2 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 21 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 2 TYR A 27 CA - CB - CG ANGL. DEV. = -11.6 DEGREES REMARK 500 2 TYR A 27 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 3 TYR A 27 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 4 TYR A 27 CA - CB - CG ANGL. DEV. = -12.8 DEGREES REMARK 500 4 TYR A 27 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 7 TYR A 27 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 8 TYR A 27 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 9 TYR A 27 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 10 TYR A 27 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 11 TYR A 20 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 12 TYR A 20 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 12 TYR A 27 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 13 TYR A 27 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 14 TYR A 27 CA - CB - CG ANGL. DEV. = -12.9 DEGREES REMARK 500 14 TYR A 27 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 20 TYR A 27 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 21 TYR A 20 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 22 TYR A 27 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 23 TYR A 27 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 24 TYR A 27 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 8 31.72 -70.77 REMARK 500 1 GLU A 10 30.22 -65.82 REMARK 500 1 ARG A 19 12.38 -64.33 REMARK 500 2 SER A 3 157.71 66.09 REMARK 500 2 ASP A 6 -164.82 64.24 REMARK 500 2 ASN A 7 67.07 9.11 REMARK 500 2 ARG A 19 -4.97 -57.38 REMARK 500 3 PRO A 2 -95.56 -61.99 REMARK 500 3 SER A 3 51.07 -169.06 REMARK 500 3 PRO A 5 43.78 -77.81 REMARK 500 3 ASP A 6 19.53 -158.69 REMARK 500 3 ASN A 7 53.10 -160.17 REMARK 500 3 PRO A 8 50.70 -69.27 REMARK 500 4 SER A 3 35.20 -70.41 REMARK 500 4 PRO A 5 36.64 -73.81 REMARK 500 4 ASP A 6 -146.97 58.56 REMARK 500 4 PRO A 8 33.38 -74.46 REMARK 500 4 GLU A 10 145.46 82.05 REMARK 500 5 PRO A 8 25.42 -71.35 REMARK 500 5 GLU A 10 154.58 85.20 REMARK 500 5 ARG A 19 -1.35 -58.10 REMARK 500 6 PRO A 2 -99.70 -66.70 REMARK 500 6 ASN A 7 51.68 34.79 REMARK 500 6 GLU A 10 116.81 64.32 REMARK 500 6 ASP A 11 24.23 -147.18 REMARK 500 6 ARG A 19 -6.66 -58.63 REMARK 500 7 LYS A 4 85.92 50.02 REMARK 500 7 ASP A 6 -166.30 58.26 REMARK 500 7 ARG A 19 2.60 -59.26 REMARK 500 8 LYS A 4 146.59 70.67 REMARK 500 8 ASP A 6 -143.52 -139.11 REMARK 500 8 ARG A 19 1.16 -60.92 REMARK 500 9 PRO A 5 -169.28 -69.40 REMARK 500 9 ASP A 6 173.26 75.01 REMARK 500 9 PRO A 8 40.03 -82.90 REMARK 500 10 ASN A 7 52.93 38.41 REMARK 500 10 PRO A 8 77.75 -65.13 REMARK 500 10 GLN A 34 -72.21 -68.33 REMARK 500 11 ASP A 6 146.56 108.64 REMARK 500 11 ASN A 7 109.37 -170.62 REMARK 500 11 ASP A 11 7.85 -68.60 REMARK 500 13 PRO A 5 -161.10 -78.18 REMARK 500 13 PRO A 8 70.13 -66.19 REMARK 500 13 GLU A 10 142.85 -171.34 REMARK 500 14 PRO A 2 -105.08 -67.82 REMARK 500 14 SER A 3 41.80 -79.27 REMARK 500 14 ASN A 7 94.41 -36.15 REMARK 500 14 ARG A 19 1.85 -58.94 REMARK 500 15 PRO A 2 -169.45 -78.95 REMARK 500 15 SER A 3 -142.75 58.09 REMARK 500 REMARK 500 THIS ENTRY HAS 93 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 7 PRO A 8 24 -145.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 19 0.26 SIDE CHAIN REMARK 500 1 ARG A 25 0.24 SIDE CHAIN REMARK 500 1 ARG A 33 0.30 SIDE CHAIN REMARK 500 1 ARG A 35 0.29 SIDE CHAIN REMARK 500 2 ARG A 19 0.18 SIDE CHAIN REMARK 500 2 ARG A 25 0.23 SIDE CHAIN REMARK 500 2 ARG A 33 0.30 SIDE CHAIN REMARK 500 2 ARG A 35 0.31 SIDE CHAIN REMARK 500 3 ARG A 19 0.27 SIDE CHAIN REMARK 500 3 ARG A 25 0.12 SIDE CHAIN REMARK 500 3 ARG A 33 0.28 SIDE CHAIN REMARK 500 3 ARG A 35 0.29 SIDE CHAIN REMARK 500 4 ARG A 19 0.32 SIDE CHAIN REMARK 500 4 ARG A 25 0.16 SIDE CHAIN REMARK 500 4 ARG A 33 0.08 SIDE CHAIN REMARK 500 4 ARG A 35 0.29 SIDE CHAIN REMARK 500 5 ARG A 19 0.32 SIDE CHAIN REMARK 500 5 ARG A 25 0.19 SIDE CHAIN REMARK 500 5 ARG A 33 0.23 SIDE CHAIN REMARK 500 5 ARG A 35 0.32 SIDE CHAIN REMARK 500 6 ARG A 19 0.21 SIDE CHAIN REMARK 500 6 ARG A 25 0.26 SIDE CHAIN REMARK 500 6 ARG A 33 0.27 SIDE CHAIN REMARK 500 6 ARG A 35 0.31 SIDE CHAIN REMARK 500 7 ARG A 19 0.28 SIDE CHAIN REMARK 500 7 ARG A 25 0.28 SIDE CHAIN REMARK 500 7 ARG A 33 0.25 SIDE CHAIN REMARK 500 7 ARG A 35 0.32 SIDE CHAIN REMARK 500 8 ARG A 19 0.13 SIDE CHAIN REMARK 500 8 ARG A 25 0.29 SIDE CHAIN REMARK 500 8 ARG A 33 0.32 SIDE CHAIN REMARK 500 8 ARG A 35 0.30 SIDE CHAIN REMARK 500 9 ARG A 19 0.26 SIDE CHAIN REMARK 500 9 ARG A 25 0.29 SIDE CHAIN REMARK 500 9 ARG A 33 0.24 SIDE CHAIN REMARK 500 9 ARG A 35 0.30 SIDE CHAIN REMARK 500 10 ARG A 19 0.32 SIDE CHAIN REMARK 500 10 ARG A 25 0.20 SIDE CHAIN REMARK 500 10 ARG A 33 0.30 SIDE CHAIN REMARK 500 10 ARG A 35 0.28 SIDE CHAIN REMARK 500 11 ARG A 19 0.30 SIDE CHAIN REMARK 500 11 ARG A 25 0.30 SIDE CHAIN REMARK 500 11 ARG A 33 0.26 SIDE CHAIN REMARK 500 11 ARG A 35 0.30 SIDE CHAIN REMARK 500 12 ARG A 19 0.30 SIDE CHAIN REMARK 500 12 ARG A 25 0.31 SIDE CHAIN REMARK 500 12 ARG A 33 0.32 SIDE CHAIN REMARK 500 12 ARG A 35 0.32 SIDE CHAIN REMARK 500 13 ARG A 19 0.29 SIDE CHAIN REMARK 500 13 ARG A 25 0.31 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 104 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 37 DBREF 1RON A 1 36 UNP P01303 NEUY_HUMAN 29 64 SEQRES 1 A 37 TYR PRO SER LYS PRO ASP ASN PRO GLY GLU ASP ALA PRO SEQRES 2 A 37 ALA GLU ASP MET ALA ARG TYR TYR SER ALA LEU ARG HIS SEQRES 3 A 37 TYR ILE ASN LEU ILE THR ARG GLN ARG TYR NH2 HET NH2 A 37 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 H2 N HELIX 1 1 PRO A 13 TYR A 36 1KINKED AT 21 - 22 24 LINK N NH2 A 37 C TYR A 36 1555 1555 1.29 SITE 1 AC1 4 ARG A 33 GLN A 34 ARG A 35 TYR A 36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1