HEADER HYDROLASE 02-DEC-03 1ROR TITLE CRYSTAL STRUCTURES OF THE CATALYTIC DOMAIN OF PHOSPHODIESTERASE 4B2B TITLE 2 COMPLEXED WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: DPDE4, PDE32; COMPND 6 EC: 3.1.4.17; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE4B; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469 KEYWDS PDE, AMP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.X.XU,W.J.ROCQUE,M.H.LAMBERT,D.E.VANDERWALL,R.T.NOLTE REVDAT 4 23-AUG-23 1ROR 1 REMARK SEQADV LINK REVDAT 3 16-NOV-11 1ROR 1 VERSN HETATM REVDAT 2 24-FEB-09 1ROR 1 VERSN REVDAT 1 07-DEC-04 1ROR 0 JRNL AUTH R.X.XU,W.J.ROCQUE,M.H.LAMBERT,D.E.VANDERWALL,M.A.LUTHER, JRNL AUTH 2 R.T.NOLTE JRNL TITL CRYSTAL STRUCTURES OF THE CATALYTIC DOMAIN OF JRNL TITL 2 PHOSPHODIESTERASE 4B COMPLEXED WITH AMP, 8-BR-AMP, AND JRNL TITL 3 ROLIPRAM. JRNL REF J.MOL.BIOL. V. 337 355 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15003452 JRNL DOI 10.1016/J.JMB.2004.01.040 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : CNS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 58419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2370 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5443 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 399 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.090 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MASK REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ROR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000020916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58419 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : 0.58400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: CATALYTIC DOMAIN OF HOLO PHOSPHODIESTERASE 4B2B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3000, SODIUM ACETATE, GLYCEROL, REMARK 280 SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.52650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.52650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.55550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 79.93050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.55550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.93050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.52650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.55550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 79.93050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.52650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.55550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 79.93050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 849 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 151 REMARK 465 PRO A 490 REMARK 465 PRO A 491 REMARK 465 LEU A 492 REMARK 465 ASP A 493 REMARK 465 GLU A 494 REMARK 465 GLN A 495 REMARK 465 ASN A 496 REMARK 465 ARG A 497 REMARK 465 ASP A 498 REMARK 465 CYS A 499 REMARK 465 GLN A 500 REMARK 465 GLY A 501 REMARK 465 LEU A 502 REMARK 465 MET A 503 REMARK 465 GLU A 504 REMARK 465 LYS A 505 REMARK 465 PHE A 506 REMARK 465 GLN A 507 REMARK 465 PHE A 508 REMARK 465 GLU A 509 REMARK 465 LEU A 510 REMARK 465 THR A 511 REMARK 465 LEU A 512 REMARK 465 ASP A 513 REMARK 465 GLU A 514 REMARK 465 GLU A 515 REMARK 465 ASP A 516 REMARK 465 SER A 517 REMARK 465 GLU A 518 REMARK 465 GLY A 519 REMARK 465 PRO A 520 REMARK 465 GLU A 521 REMARK 465 LYS A 522 REMARK 465 GLU A 523 REMARK 465 GLY A 524 REMARK 465 GLU A 525 REMARK 465 GLY A 526 REMARK 465 HIS A 527 REMARK 465 SER A 528 REMARK 465 MET B 151 REMARK 465 ALA B 489 REMARK 465 PRO B 490 REMARK 465 PRO B 491 REMARK 465 LEU B 492 REMARK 465 ASP B 493 REMARK 465 GLU B 494 REMARK 465 GLN B 495 REMARK 465 ASN B 496 REMARK 465 ARG B 497 REMARK 465 ASP B 498 REMARK 465 CYS B 499 REMARK 465 GLN B 500 REMARK 465 GLY B 501 REMARK 465 LEU B 502 REMARK 465 MET B 503 REMARK 465 GLU B 504 REMARK 465 LYS B 505 REMARK 465 PHE B 506 REMARK 465 GLN B 507 REMARK 465 PHE B 508 REMARK 465 GLU B 509 REMARK 465 LEU B 510 REMARK 465 THR B 511 REMARK 465 LEU B 512 REMARK 465 ASP B 513 REMARK 465 GLU B 514 REMARK 465 GLU B 515 REMARK 465 ASP B 516 REMARK 465 SER B 517 REMARK 465 GLU B 518 REMARK 465 GLY B 519 REMARK 465 PRO B 520 REMARK 465 GLU B 521 REMARK 465 LYS B 522 REMARK 465 GLU B 523 REMARK 465 GLY B 524 REMARK 465 GLU B 525 REMARK 465 GLY B 526 REMARK 465 HIS B 527 REMARK 465 SER B 528 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 204 29.68 49.39 REMARK 500 ALA A 257 10.98 59.44 REMARK 500 ASP A 299 8.79 57.61 REMARK 500 SER A 301 51.90 36.61 REMARK 500 VAL A 366 -162.76 -117.86 REMARK 500 SER A 369 -26.45 159.07 REMARK 500 LYS A 434 -8.73 -54.73 REMARK 500 ILE A 450 -59.16 -130.09 REMARK 500 PRO A 488 -128.60 -67.34 REMARK 500 ILE B 153 16.29 -67.37 REMARK 500 GLU B 161 -71.40 -56.09 REMARK 500 ASP B 299 2.22 56.68 REMARK 500 LYS B 364 144.79 -39.52 REMARK 500 SER B 368 2.84 -66.21 REMARK 500 ASN B 376 136.65 175.20 REMARK 500 LEU B 393 43.94 -104.42 REMARK 500 MET B 431 -6.56 71.02 REMARK 500 LYS B 434 27.99 -73.11 REMARK 500 THR B 436 -0.95 -147.86 REMARK 500 ILE B 450 -60.83 -129.19 REMARK 500 PRO B 485 -165.87 -65.38 REMARK 500 GLN B 486 94.80 0.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 238 NE2 REMARK 620 2 HIS A 274 NE2 109.4 REMARK 620 3 ASP A 275 OD2 94.1 84.9 REMARK 620 4 ASP A 392 OD1 94.2 88.2 170.6 REMARK 620 5 AMP A 603 O1P 149.0 100.6 96.1 78.9 REMARK 620 6 AMP A 603 O2P 89.1 160.6 88.0 96.6 62.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 275 OD1 REMARK 620 2 AMP A 603 O1P 95.5 REMARK 620 3 AMP A 603 O3P 98.2 52.7 REMARK 620 4 HOH A 605 O 164.8 94.6 97.0 REMARK 620 5 HOH A 622 O 79.6 104.4 156.9 86.9 REMARK 620 6 HOH A 623 O 84.7 174.0 121.4 86.5 81.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 238 NE2 REMARK 620 2 HIS B 274 NE2 107.4 REMARK 620 3 ASP B 275 OD2 88.0 88.0 REMARK 620 4 ASP B 392 OD1 97.1 85.8 172.9 REMARK 620 5 AMP B 703 O2P 151.3 100.6 99.5 78.2 REMARK 620 6 AMP B 703 O3P 90.5 161.9 90.0 94.8 62.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 275 OD1 REMARK 620 2 AMP B 703 O1P 93.9 REMARK 620 3 AMP B 703 O2P 88.5 56.0 REMARK 620 4 HOH B 704 O 162.8 102.6 96.4 REMARK 620 5 HOH B 707 O 79.3 155.8 100.3 83.5 REMARK 620 6 HOH B 724 O 89.3 114.2 169.8 88.5 89.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RO6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ROLIPRAM (R & S) REMARK 900 RELATED ID: 1RO9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH 8-BR-AMP DBREF 1ROR A 152 528 UNP Q07343 PDE4B_HUMAN 324 700 DBREF 1ROR B 152 528 UNP Q07343 PDE4B_HUMAN 324 700 SEQADV 1ROR MET A 151 UNP Q07343 INITIATING METHIONINE SEQADV 1ROR ALA A 487 UNP Q07343 SER 659 ENGINEERED MUTATION SEQADV 1ROR ALA A 489 UNP Q07343 SER 661 ENGINEERED MUTATION SEQADV 1ROR MET B 151 UNP Q07343 INITIATING METHIONINE SEQADV 1ROR ALA B 487 UNP Q07343 SER 659 ENGINEERED MUTATION SEQADV 1ROR ALA B 489 UNP Q07343 SER 661 ENGINEERED MUTATION SEQRES 1 A 378 MET SER ILE SER ARG PHE GLY VAL ASN THR GLU ASN GLU SEQRES 2 A 378 ASP HIS LEU ALA LYS GLU LEU GLU ASP LEU ASN LYS TRP SEQRES 3 A 378 GLY LEU ASN ILE PHE ASN VAL ALA GLY TYR SER HIS ASN SEQRES 4 A 378 ARG PRO LEU THR CYS ILE MET TYR ALA ILE PHE GLN GLU SEQRES 5 A 378 ARG ASP LEU LEU LYS THR PHE ARG ILE SER SER ASP THR SEQRES 6 A 378 PHE ILE THR TYR MET MET THR LEU GLU ASP HIS TYR HIS SEQRES 7 A 378 SER ASP VAL ALA TYR HIS ASN SER LEU HIS ALA ALA ASP SEQRES 8 A 378 VAL ALA GLN SER THR HIS VAL LEU LEU SER THR PRO ALA SEQRES 9 A 378 LEU ASP ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA SEQRES 10 A 378 ILE PHE ALA ALA ALA ILE HIS ASP VAL ASP HIS PRO GLY SEQRES 11 A 378 VAL SER ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU SEQRES 12 A 378 ALA LEU MET TYR ASN ASP GLU SER VAL LEU GLU ASN HIS SEQRES 13 A 378 HIS LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU HIS SEQRES 14 A 378 CYS ASP ILE PHE MET ASN LEU THR LYS LYS GLN ARG GLN SEQRES 15 A 378 THR LEU ARG LYS MET VAL ILE ASP MET VAL LEU ALA THR SEQRES 16 A 378 ASP MET SER LYS HIS MET SER LEU LEU ALA ASP LEU LYS SEQRES 17 A 378 THR MET VAL GLU THR LYS LYS VAL THR SER SER GLY VAL SEQRES 18 A 378 LEU LEU LEU ASP ASN TYR THR ASP ARG ILE GLN VAL LEU SEQRES 19 A 378 ARG ASN MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR SEQRES 20 A 378 LYS SER LEU GLU LEU TYR ARG GLN TRP THR ASP ARG ILE SEQRES 21 A 378 MET GLU GLU PHE PHE GLN GLN GLY ASP LYS GLU ARG GLU SEQRES 22 A 378 ARG GLY MET GLU ILE SER PRO MET CYS ASP LYS HIS THR SEQRES 23 A 378 ALA SER VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR SEQRES 24 A 378 ILE VAL HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL SEQRES 25 A 378 GLN PRO ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP SEQRES 26 A 378 ASN ARG ASN TRP TYR GLN SER MET ILE PRO GLN ALA PRO SEQRES 27 A 378 ALA PRO PRO LEU ASP GLU GLN ASN ARG ASP CYS GLN GLY SEQRES 28 A 378 LEU MET GLU LYS PHE GLN PHE GLU LEU THR LEU ASP GLU SEQRES 29 A 378 GLU ASP SER GLU GLY PRO GLU LYS GLU GLY GLU GLY HIS SEQRES 30 A 378 SER SEQRES 1 B 378 MET SER ILE SER ARG PHE GLY VAL ASN THR GLU ASN GLU SEQRES 2 B 378 ASP HIS LEU ALA LYS GLU LEU GLU ASP LEU ASN LYS TRP SEQRES 3 B 378 GLY LEU ASN ILE PHE ASN VAL ALA GLY TYR SER HIS ASN SEQRES 4 B 378 ARG PRO LEU THR CYS ILE MET TYR ALA ILE PHE GLN GLU SEQRES 5 B 378 ARG ASP LEU LEU LYS THR PHE ARG ILE SER SER ASP THR SEQRES 6 B 378 PHE ILE THR TYR MET MET THR LEU GLU ASP HIS TYR HIS SEQRES 7 B 378 SER ASP VAL ALA TYR HIS ASN SER LEU HIS ALA ALA ASP SEQRES 8 B 378 VAL ALA GLN SER THR HIS VAL LEU LEU SER THR PRO ALA SEQRES 9 B 378 LEU ASP ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA SEQRES 10 B 378 ILE PHE ALA ALA ALA ILE HIS ASP VAL ASP HIS PRO GLY SEQRES 11 B 378 VAL SER ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU SEQRES 12 B 378 ALA LEU MET TYR ASN ASP GLU SER VAL LEU GLU ASN HIS SEQRES 13 B 378 HIS LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU HIS SEQRES 14 B 378 CYS ASP ILE PHE MET ASN LEU THR LYS LYS GLN ARG GLN SEQRES 15 B 378 THR LEU ARG LYS MET VAL ILE ASP MET VAL LEU ALA THR SEQRES 16 B 378 ASP MET SER LYS HIS MET SER LEU LEU ALA ASP LEU LYS SEQRES 17 B 378 THR MET VAL GLU THR LYS LYS VAL THR SER SER GLY VAL SEQRES 18 B 378 LEU LEU LEU ASP ASN TYR THR ASP ARG ILE GLN VAL LEU SEQRES 19 B 378 ARG ASN MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR SEQRES 20 B 378 LYS SER LEU GLU LEU TYR ARG GLN TRP THR ASP ARG ILE SEQRES 21 B 378 MET GLU GLU PHE PHE GLN GLN GLY ASP LYS GLU ARG GLU SEQRES 22 B 378 ARG GLY MET GLU ILE SER PRO MET CYS ASP LYS HIS THR SEQRES 23 B 378 ALA SER VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR SEQRES 24 B 378 ILE VAL HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL SEQRES 25 B 378 GLN PRO ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP SEQRES 26 B 378 ASN ARG ASN TRP TYR GLN SER MET ILE PRO GLN ALA PRO SEQRES 27 B 378 ALA PRO PRO LEU ASP GLU GLN ASN ARG ASP CYS GLN GLY SEQRES 28 B 378 LEU MET GLU LYS PHE GLN PHE GLU LEU THR LEU ASP GLU SEQRES 29 B 378 GLU ASP SER GLU GLY PRO GLU LYS GLU GLY GLU GLY HIS SEQRES 30 B 378 SER HET ZN A 601 1 HET ZN A 602 1 HET AMP A 603 23 HET ZN B 701 1 HET ZN B 702 1 HET AMP B 703 23 HETNAM ZN ZINC ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 AMP 2(C10 H14 N5 O7 P) FORMUL 9 HOH *399(H2 O) HELIX 1 1 ASN A 159 LEU A 170 1 12 HELIX 2 2 GLU A 171 LEU A 173 5 3 HELIX 3 3 ASN A 179 SER A 187 1 9 HELIX 4 4 ARG A 190 ARG A 203 1 14 HELIX 5 5 ASP A 204 PHE A 209 1 6 HELIX 6 6 SER A 212 HIS A 226 1 15 HELIX 7 7 ASN A 235 LEU A 250 1 16 HELIX 8 8 SER A 251 ASP A 256 5 6 HELIX 9 9 THR A 260 HIS A 274 1 15 HELIX 10 10 SER A 282 THR A 289 1 8 HELIX 11 11 SER A 291 TYR A 297 1 7 HELIX 12 12 SER A 301 LEU A 314 1 14 HELIX 13 13 LEU A 315 GLU A 317 5 3 HELIX 14 14 THR A 327 ALA A 344 1 18 HELIX 15 15 THR A 345 SER A 348 5 4 HELIX 16 16 LYS A 349 THR A 363 1 15 HELIX 17 17 ASN A 376 LEU A 393 1 18 HELIX 18 18 SER A 394 LYS A 398 5 5 HELIX 19 19 SER A 399 ARG A 424 1 26 HELIX 20 20 SER A 438 ILE A 450 1 13 HELIX 21 21 ILE A 450 VAL A 462 1 13 HELIX 22 22 ALA A 466 ILE A 484 1 19 HELIX 23 23 ASN B 159 LEU B 170 1 12 HELIX 24 24 GLU B 171 LEU B 173 5 3 HELIX 25 25 ASN B 179 TYR B 186 1 8 HELIX 26 26 ARG B 190 ARG B 203 1 14 HELIX 27 27 ASP B 204 PHE B 209 1 6 HELIX 28 28 SER B 212 HIS B 226 1 15 HELIX 29 29 ASN B 235 SER B 251 1 17 HELIX 30 30 THR B 252 ASP B 256 5 5 HELIX 31 31 THR B 260 HIS B 274 1 15 HELIX 32 32 SER B 282 THR B 289 1 8 HELIX 33 33 SER B 291 TYR B 297 1 7 HELIX 34 34 SER B 301 LEU B 314 1 14 HELIX 35 35 LEU B 315 GLU B 317 5 3 HELIX 36 36 THR B 327 ALA B 344 1 18 HELIX 37 37 THR B 345 SER B 348 5 4 HELIX 38 38 LYS B 349 THR B 363 1 15 HELIX 39 39 ASN B 376 LEU B 393 1 18 HELIX 40 40 SER B 394 LYS B 398 5 5 HELIX 41 41 SER B 399 ARG B 424 1 26 HELIX 42 42 SER B 438 ILE B 450 1 13 HELIX 43 43 ILE B 450 VAL B 462 1 13 HELIX 44 44 ALA B 466 SER B 482 1 17 LINK NE2 HIS A 238 ZN ZN A 601 1555 1555 1.95 LINK NE2 HIS A 274 ZN ZN A 601 1555 1555 2.02 LINK OD2 ASP A 275 ZN ZN A 601 1555 1555 2.23 LINK OD1 ASP A 275 ZN ZN A 602 1555 1555 2.44 LINK OD1 ASP A 392 ZN ZN A 601 1555 1555 2.37 LINK ZN ZN A 601 O1P AMP A 603 1555 1555 2.59 LINK ZN ZN A 601 O2P AMP A 603 1555 1555 2.00 LINK ZN ZN A 602 O1P AMP A 603 1555 1555 2.74 LINK ZN ZN A 602 O3P AMP A 603 1555 1555 2.57 LINK ZN ZN A 602 O HOH A 605 1555 1555 2.33 LINK ZN ZN A 602 O HOH A 622 1555 1555 2.42 LINK ZN ZN A 602 O HOH A 623 1555 1555 2.43 LINK NE2 HIS B 238 ZN ZN B 701 1555 1555 1.95 LINK NE2 HIS B 274 ZN ZN B 701 1555 1555 2.06 LINK OD2 ASP B 275 ZN ZN B 701 1555 1555 2.23 LINK OD1 ASP B 275 ZN ZN B 702 1555 1555 2.47 LINK OD1 ASP B 392 ZN ZN B 701 1555 1555 2.32 LINK ZN ZN B 701 O2P AMP B 703 1555 1555 2.52 LINK ZN ZN B 701 O3P AMP B 703 1555 1555 2.04 LINK ZN ZN B 702 O1P AMP B 703 1555 1555 2.45 LINK ZN ZN B 702 O2P AMP B 703 1555 1555 2.70 LINK ZN ZN B 702 O HOH B 704 1555 1555 2.34 LINK ZN ZN B 702 O HOH B 707 1555 1555 2.40 LINK ZN ZN B 702 O HOH B 724 1555 1555 2.59 CISPEP 1 GLN A 463 PRO A 464 0 -1.18 CISPEP 2 GLN B 463 PRO B 464 0 -0.55 SITE 1 AC1 5 HIS A 238 HIS A 274 ASP A 275 ASP A 392 SITE 2 AC1 5 AMP A 603 SITE 1 AC2 5 HIS B 238 HIS B 274 ASP B 275 ASP B 392 SITE 2 AC2 5 AMP B 703 SITE 1 AC3 5 ASP A 275 AMP A 603 HOH A 605 HOH A 622 SITE 2 AC3 5 HOH A 623 SITE 1 AC4 5 ASP B 275 AMP B 703 HOH B 704 HOH B 707 SITE 2 AC4 5 HOH B 724 SITE 1 AC5 13 HIS A 234 HIS A 238 HIS A 274 ASP A 275 SITE 2 AC5 13 ASP A 392 ASN A 395 PHE A 414 GLN A 443 SITE 3 AC5 13 PHE A 446 ZN A 601 ZN A 602 HOH A 607 SITE 4 AC5 13 HOH A 847 SITE 1 AC6 15 HIS B 234 HIS B 238 HIS B 274 ASP B 275 SITE 2 AC6 15 ASP B 392 LEU B 393 ASN B 395 ILE B 410 SITE 3 AC6 15 PHE B 414 GLN B 443 PHE B 446 ZN B 701 SITE 4 AC6 15 ZN B 702 HOH B 706 HOH B 822 CRYST1 105.111 159.861 109.053 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009514 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009170 0.00000