HEADER HYDROLASE 02-DEC-03 1ROS TITLE CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO 2-(1,3-DIOXO-1,3-DIHYDRO-2H- TITLE 2 ISOINDOL-2-YL)ETHYL-4-(4-ETHOXY[1,1-BIPHENYL]-4-YL)-4-OXOBUTANOIC TITLE 3 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE METALLOELASTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 106-268; COMPND 5 SYNONYM: HME, MATRIX METALLOPROTEINASE-12, MMP-12, MACROPHAGE COMPND 6 ELASTASE, ME; COMPND 7 EC: 3.4.24.65; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP12, HME; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEMEX1 KEYWDS MACROPHAGE METALLOELASTASE, NON-ZINC CHELATOR, MMP-12, MMP12 KEYWDS 2 INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.MORALES,S.PERRIER,J.M.FLORENT,J.BELTRA,S.DUFOUR,I.DE MENDEZ, AUTHOR 2 P.MANCEAU,A.TERTRE,F.MOREAU,D.COMPERE,A.C.DUBLANCHET,M.O'GARA REVDAT 4 23-AUG-23 1ROS 1 REMARK LINK REVDAT 3 11-OCT-17 1ROS 1 REMARK REVDAT 2 24-FEB-09 1ROS 1 VERSN REVDAT 1 07-DEC-04 1ROS 0 JRNL AUTH R.MORALES,S.PERRIER,J.M.FLORENT,J.BELTRA,S.DUFOUR, JRNL AUTH 2 I.DE MENDEZ,P.MANCEAU,A.TERTRE,F.MOREAU,D.COMPERE, JRNL AUTH 3 A.C.DUBLANCHET,M.O'GARA JRNL TITL CRYSTAL STRUCTURES OF NOVEL NON-PEPTIDIC, NON-ZINC CHELATING JRNL TITL 2 INHIBITORS BOUND TO MMP-12. JRNL REF J.MOL.BIOL. V. 341 1063 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15289103 JRNL DOI 10.1016/J.JMB.2004.06.039 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 22596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2242 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2406 REMARK 3 BIN FREE R VALUE : 0.3006 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 166 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2496 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01400 REMARK 3 B22 (A**2) : -0.01400 REMARK 3 B33 (A**2) : 0.02800 REMARK 3 B12 (A**2) : -0.03100 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.217 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ROS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000020917. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22759 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 24.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 2.120 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.93 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27500 REMARK 200 FOR SHELL : 3.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1JK3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5M NACL, 0.1M IMIDAZOLE PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.60000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.56478 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.83333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 61.60000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 35.56478 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.83333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 61.60000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 35.56478 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.83333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.12955 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 39.66667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 71.12955 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.66667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 71.12955 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.66667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 265 REMARK 465 LYS A 266 REMARK 465 GLU A 267 REMARK 465 ASN A 268 REMARK 465 PRO B 265 REMARK 465 LYS B 266 REMARK 465 GLU B 267 REMARK 465 ASN B 268 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER A 207 O SER B 207 6564 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 110 43.98 -94.86 REMARK 500 HIS A 206 -128.00 -131.96 REMARK 500 ARG B 110 43.91 -96.55 REMARK 500 PHE B 171 -0.94 75.10 REMARK 500 HIS B 172 76.70 -119.53 REMARK 500 HIS B 206 -124.94 -129.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DEO A 1 O5 REMARK 620 2 DEO A 1 O6 57.4 REMARK 620 3 HIS A 218 NE2 114.6 89.1 REMARK 620 4 HIS A 222 NE2 135.6 96.1 98.1 REMARK 620 5 HIS A 228 NE2 92.6 148.8 113.8 101.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 ASP A 124 OD1 48.2 REMARK 620 3 GLU A 199 O 162.2 149.6 REMARK 620 4 GLU A 199 OE2 92.7 97.1 85.0 REMARK 620 5 GLU A 201 O 118.0 76.9 77.0 124.6 REMARK 620 6 HOH A 497 O 73.9 87.3 102.2 157.6 77.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 O REMARK 620 2 GLY A 190 O 157.3 REMARK 620 3 GLY A 192 O 95.1 94.8 REMARK 620 4 ASP A 194 OD2 92.4 107.0 95.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 168 NE2 REMARK 620 2 ASP A 170 OD2 105.8 REMARK 620 3 HIS A 183 NE2 112.5 120.5 REMARK 620 4 HIS A 196 ND1 113.4 89.4 113.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 175 OD2 REMARK 620 2 GLY A 176 O 84.8 REMARK 620 3 GLY A 178 O 85.8 82.1 REMARK 620 4 ILE A 180 O 89.4 169.0 88.1 REMARK 620 5 ASP A 198 OD1 92.6 91.8 173.8 97.8 REMARK 620 6 GLU A 201 OE2 173.9 90.2 90.1 95.0 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DEO B 1 O5 REMARK 620 2 DEO B 1 O6 56.7 REMARK 620 3 HIS B 218 NE2 118.0 89.6 REMARK 620 4 HIS B 222 NE2 133.1 95.4 96.1 REMARK 620 5 HIS B 228 NE2 94.2 150.0 112.8 101.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD1 REMARK 620 2 ASP B 124 OD2 48.1 REMARK 620 3 GLU B 199 OE2 92.3 91.8 REMARK 620 4 GLU B 199 O 153.1 158.7 86.3 REMARK 620 5 GLU B 201 O 81.5 120.4 124.6 77.2 REMARK 620 6 HOH B 565 O 93.0 78.0 160.4 97.2 74.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 158 O REMARK 620 2 GLY B 190 O 162.4 REMARK 620 3 GLY B 192 O 95.2 94.8 REMARK 620 4 ASP B 194 OD2 89.7 104.2 92.9 REMARK 620 5 HOH B 591 O 85.2 81.8 166.9 100.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 168 NE2 REMARK 620 2 ASP B 170 OD2 112.2 REMARK 620 3 HIS B 183 NE2 112.3 117.8 REMARK 620 4 HIS B 196 ND1 112.2 91.2 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 175 OD2 REMARK 620 2 GLY B 176 O 86.7 REMARK 620 3 GLY B 178 O 86.5 86.2 REMARK 620 4 ILE B 180 O 88.0 171.3 86.7 REMARK 620 5 ASP B 198 OD1 93.9 90.5 176.6 96.7 REMARK 620 6 GLU B 201 OE2 176.8 91.9 90.6 93.1 89.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEO B 1 DBREF 1ROS A 106 268 UNP P39900 MMP12_HUMAN 106 268 DBREF 1ROS B 106 268 UNP P39900 MMP12_HUMAN 106 268 SEQRES 1 A 163 GLY PRO VAL TRP ARG LYS HIS TYR ILE THR TYR ARG ILE SEQRES 2 A 163 ASN ASN TYR THR PRO ASP MET ASN ARG GLU ASP VAL ASP SEQRES 3 A 163 TYR ALA ILE ARG LYS ALA PHE GLN VAL TRP SER ASN VAL SEQRES 4 A 163 THR PRO LEU LYS PHE SER LYS ILE ASN THR GLY MET ALA SEQRES 5 A 163 ASP ILE LEU VAL VAL PHE ALA ARG GLY ALA HIS GLY ASP SEQRES 6 A 163 PHE HIS ALA PHE ASP GLY LYS GLY GLY ILE LEU ALA HIS SEQRES 7 A 163 ALA PHE GLY PRO GLY SER GLY ILE GLY GLY ASP ALA HIS SEQRES 8 A 163 PHE ASP GLU ASP GLU PHE TRP THR THR HIS SER GLY GLY SEQRES 9 A 163 THR ASN LEU PHE LEU THR ALA VAL HIS GLU ILE GLY HIS SEQRES 10 A 163 SER LEU GLY LEU GLY HIS SER SER ASP PRO LYS ALA VAL SEQRES 11 A 163 MET PHE PRO THR TYR LYS TYR VAL ASP ILE ASN THR PHE SEQRES 12 A 163 ARG LEU SER ALA ASP ASP ILE ARG GLY ILE GLN SER LEU SEQRES 13 A 163 TYR GLY ASP PRO LYS GLU ASN SEQRES 1 B 163 GLY PRO VAL TRP ARG LYS HIS TYR ILE THR TYR ARG ILE SEQRES 2 B 163 ASN ASN TYR THR PRO ASP MET ASN ARG GLU ASP VAL ASP SEQRES 3 B 163 TYR ALA ILE ARG LYS ALA PHE GLN VAL TRP SER ASN VAL SEQRES 4 B 163 THR PRO LEU LYS PHE SER LYS ILE ASN THR GLY MET ALA SEQRES 5 B 163 ASP ILE LEU VAL VAL PHE ALA ARG GLY ALA HIS GLY ASP SEQRES 6 B 163 PHE HIS ALA PHE ASP GLY LYS GLY GLY ILE LEU ALA HIS SEQRES 7 B 163 ALA PHE GLY PRO GLY SER GLY ILE GLY GLY ASP ALA HIS SEQRES 8 B 163 PHE ASP GLU ASP GLU PHE TRP THR THR HIS SER GLY GLY SEQRES 9 B 163 THR ASN LEU PHE LEU THR ALA VAL HIS GLU ILE GLY HIS SEQRES 10 B 163 SER LEU GLY LEU GLY HIS SER SER ASP PRO LYS ALA VAL SEQRES 11 B 163 MET PHE PRO THR TYR LYS TYR VAL ASP ILE ASN THR PHE SEQRES 12 B 163 ARG LEU SER ALA ASP ASP ILE ARG GLY ILE GLN SER LEU SEQRES 13 B 163 TYR GLY ASP PRO LYS GLU ASN HET ZN A 400 1 HET ZN A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET DEO A 1 35 HET ZN B 500 1 HET ZN B 501 1 HET CA B 502 1 HET CA B 503 1 HET CA B 504 1 HET DEO B 1 35 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM DEO 2-[2-(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2-YL)ETHYL]-4- HETNAM 2 DEO (4'-ETHOXY-1,1'-BIPHENYL-4-YL)-4-OXOBUTANOIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CA 6(CA 2+) FORMUL 8 DEO 2(C28 H25 N O6) FORMUL 15 HOH *276(H2 O) HELIX 1 1 ASN A 126 ASN A 143 1 18 HELIX 2 2 LEU A 212 LEU A 224 1 13 HELIX 3 3 ASP A 244 PHE A 248 5 5 HELIX 4 4 SER A 251 GLY A 263 1 13 HELIX 5 5 ASN B 126 ASN B 143 1 18 HELIX 6 6 LEU B 212 LEU B 224 1 13 HELIX 7 7 ASP B 244 PHE B 248 5 5 HELIX 8 8 SER B 251 GLY B 263 1 13 SHEET 1 A 5 LYS A 148 LYS A 151 0 SHEET 2 A 5 TYR A 113 ILE A 118 1 N ILE A 114 O LYS A 148 SHEET 3 A 5 ILE A 159 ALA A 164 1 O VAL A 161 N ARG A 117 SHEET 4 A 5 ALA A 195 ASP A 198 1 O PHE A 197 N VAL A 162 SHEET 5 A 5 ALA A 182 ALA A 184 -1 N HIS A 183 O HIS A 196 SHEET 1 B 2 TRP A 203 THR A 204 0 SHEET 2 B 2 THR A 210 ASN A 211 1 O THR A 210 N THR A 204 SHEET 1 C 5 LYS B 148 LYS B 151 0 SHEET 2 C 5 TYR B 113 ILE B 118 1 N ILE B 114 O LYS B 148 SHEET 3 C 5 ILE B 159 ALA B 164 1 O VAL B 161 N ARG B 117 SHEET 4 C 5 ALA B 195 ASP B 198 1 O PHE B 197 N VAL B 162 SHEET 5 C 5 ALA B 182 ALA B 184 -1 N HIS B 183 O HIS B 196 SHEET 1 D 2 TRP B 203 THR B 204 0 SHEET 2 D 2 THR B 210 ASN B 211 1 O THR B 210 N THR B 204 LINK O5 DEO A 1 ZN ZN A 400 1555 1555 1.92 LINK O6 DEO A 1 ZN ZN A 400 1555 1555 2.59 LINK OD2 ASP A 124 CA CA A 404 1555 1555 2.90 LINK OD1 ASP A 124 CA CA A 404 1555 1555 2.34 LINK O ASP A 158 CA CA A 403 1555 1555 2.37 LINK NE2 HIS A 168 ZN ZN A 401 1555 1555 1.95 LINK OD2 ASP A 170 ZN ZN A 401 1555 1555 1.99 LINK OD2 ASP A 175 CA CA A 402 1555 1555 2.39 LINK O GLY A 176 CA CA A 402 1555 1555 2.28 LINK O GLY A 178 CA CA A 402 1555 1555 2.44 LINK O ILE A 180 CA CA A 402 1555 1555 2.29 LINK NE2 HIS A 183 ZN ZN A 401 1555 1555 1.98 LINK O GLY A 190 CA CA A 403 1555 1555 2.56 LINK O GLY A 192 CA CA A 403 1555 1555 2.24 LINK OD2 ASP A 194 CA CA A 403 1555 1555 2.52 LINK ND1 HIS A 196 ZN ZN A 401 1555 1555 2.07 LINK OD1 ASP A 198 CA CA A 402 1555 1555 2.34 LINK O GLU A 199 CA CA A 404 1555 1555 2.26 LINK OE2 GLU A 199 CA CA A 404 1555 1555 2.39 LINK OE2 GLU A 201 CA CA A 402 1555 1555 2.17 LINK O GLU A 201 CA CA A 404 1555 1555 2.41 LINK NE2 HIS A 218 ZN ZN A 400 1555 1555 2.07 LINK NE2 HIS A 222 ZN ZN A 400 1555 1555 2.06 LINK NE2 HIS A 228 ZN ZN A 400 1555 1555 2.05 LINK CA CA A 404 O HOH A 497 1555 1555 2.87 LINK O5 DEO B 1 ZN ZN B 500 1555 1555 1.91 LINK O6 DEO B 1 ZN ZN B 500 1555 1555 2.63 LINK OD1 ASP B 124 CA CA B 504 1555 1555 2.21 LINK OD2 ASP B 124 CA CA B 504 1555 1555 2.92 LINK O ASP B 158 CA CA B 503 1555 1555 2.35 LINK NE2 HIS B 168 ZN ZN B 501 1555 1555 1.99 LINK OD2 ASP B 170 ZN ZN B 501 1555 1555 1.93 LINK OD2 ASP B 175 CA CA B 502 1555 1555 2.40 LINK O GLY B 176 CA CA B 502 1555 1555 2.30 LINK O GLY B 178 CA CA B 502 1555 1555 2.41 LINK O ILE B 180 CA CA B 502 1555 1555 2.30 LINK NE2 HIS B 183 ZN ZN B 501 1555 1555 2.06 LINK O GLY B 190 CA CA B 503 1555 1555 2.55 LINK O GLY B 192 CA CA B 503 1555 1555 2.26 LINK OD2 ASP B 194 CA CA B 503 1555 1555 2.65 LINK ND1 HIS B 196 ZN ZN B 501 1555 1555 2.01 LINK OD1 ASP B 198 CA CA B 502 1555 1555 2.31 LINK OE2 GLU B 199 CA CA B 504 1555 1555 2.41 LINK O GLU B 199 CA CA B 504 1555 1555 2.34 LINK OE2 GLU B 201 CA CA B 502 1555 1555 2.09 LINK O GLU B 201 CA CA B 504 1555 1555 2.39 LINK NE2 HIS B 218 ZN ZN B 500 1555 1555 1.99 LINK NE2 HIS B 222 ZN ZN B 500 1555 1555 2.06 LINK NE2 HIS B 228 ZN ZN B 500 1555 1555 2.03 LINK CA CA B 503 O HOH B 591 1555 1555 2.43 LINK CA CA B 504 O HOH B 565 1555 1555 2.77 SITE 1 AC1 4 DEO A 1 HIS A 218 HIS A 222 HIS A 228 SITE 1 AC2 4 HIS A 168 ASP A 170 HIS A 183 HIS A 196 SITE 1 AC3 6 ASP A 175 GLY A 176 GLY A 178 ILE A 180 SITE 2 AC3 6 ASP A 198 GLU A 201 SITE 1 AC4 4 ASP A 158 GLY A 190 GLY A 192 ASP A 194 SITE 1 AC5 4 ASP A 124 GLU A 199 GLU A 201 HOH A 497 SITE 1 AC6 4 DEO B 1 HIS B 218 HIS B 222 HIS B 228 SITE 1 AC7 4 HIS B 168 ASP B 170 HIS B 183 HIS B 196 SITE 1 AC8 6 ASP B 175 GLY B 176 GLY B 178 ILE B 180 SITE 2 AC8 6 ASP B 198 GLU B 201 SITE 1 AC9 5 ASP B 158 GLY B 190 GLY B 192 ASP B 194 SITE 2 AC9 5 HOH B 591 SITE 1 BC1 4 ASP B 124 GLU B 199 GLU B 201 HOH B 565 SITE 1 BC2 18 LEU A 181 ALA A 182 HIS A 183 ALA A 184 SITE 2 BC2 18 HIS A 218 GLU A 219 HIS A 222 HIS A 228 SITE 3 BC2 18 VAL A 235 PHE A 237 PRO A 238 THR A 239 SITE 4 BC2 18 TYR A 240 LYS A 241 PHE A 248 ZN A 400 SITE 5 BC2 18 HOH A 427 HOH A 430 SITE 1 BC3 19 LEU B 181 ALA B 182 HIS B 183 ALA B 184 SITE 2 BC3 19 HIS B 218 GLU B 219 HIS B 222 HIS B 228 SITE 3 BC3 19 VAL B 235 PHE B 237 PRO B 238 THR B 239 SITE 4 BC3 19 TYR B 240 LYS B 241 PHE B 248 ZN B 500 SITE 5 BC3 19 HOH B 508 HOH B 513 HOH B 529 CRYST1 123.200 123.200 59.500 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008117 0.004686 0.000000 0.00000 SCALE2 0.000000 0.009373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016807 0.00000