HEADER ROTAMASE (ISOMERASE) 14-JUN-96 1ROT TITLE STRUCTURE OF FKBP59-I, THE N-TERMINAL DOMAIN OF A 59 KDA FK506-BINDING TITLE 2 PROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FKBP59-I; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FKBP52 OR HSP56; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 ORGAN: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROTAMASE (ISOMERASE), DOMAIN I (N-TERM) OF A 59 KDA, FK506-BINDING KEYWDS 2 PROTEIN, PEPTIDYL PROLYL CIS-TRANS ISOMERASE EXPDTA SOLUTION NMR AUTHOR C.T.CRAESCU,N.ROUVIERE,A.POPESCU,E.CERPOLINI,M.-C.LEBEAU,E.- AUTHOR 2 E.BAULIEU,J.MISPELTER REVDAT 3 02-MAR-22 1ROT 1 REMARK SEQADV REVDAT 2 24-FEB-09 1ROT 1 VERSN REVDAT 1 07-DEC-96 1ROT 0 JRNL AUTH C.T.CRAESCU,N.ROUVIERE,A.POPESCU,E.CERPOLINI,M.C.LEBEAU, JRNL AUTH 2 E.E.BAULIEU,J.MISPELTER JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE IMMUNOPHILIN-LIKE DOMAIN JRNL TITL 2 OF FKBP59 IN SOLUTION. JRNL REF BIOCHEMISTRY V. 35 11045 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8780506 JRNL DOI 10.1021/BI960975P REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.ROUVIERE-FOURMY,C.T.CRAESCU,J.MISPELTER,M.C.LEBEAU, REMARK 1 AUTH 2 E.E.BAULIEU REMARK 1 TITL 1H AND 15N ASSIGNMENT OF NMR SPECTRUM, SECONDARY STRUCTURE REMARK 1 TITL 2 AND GLOBAL FOLDING OF THE IMMUNOPHILIN-LIKE DOMAIN OF THE REMARK 1 TITL 3 59-KDA FK506-BINDING PROTEIN REMARK 1 REF EUR.J.BIOCHEM. V. 231 761 1995 REMARK 1 REFN ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER REMARK 3 AUTHORS : BIOSYM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CVFF OF DISCOVER (BIOSYM) REMARK 4 REMARK 4 1ROT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176167. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMIZED AVERAGE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 GLU A 2 REMARK 465 MET A 3 REMARK 465 ASP A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 GLU A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 ALA A 12 REMARK 465 GLN A 13 REMARK 465 SER A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 LEU A 17 REMARK 465 PRO A 18 REMARK 465 LEU A 19 REMARK 465 GLU A 20 REMARK 465 GLU A 139 REMARK 465 ASP A 140 REMARK 465 LEU A 141 REMARK 465 THR A 142 REMARK 465 ASP A 143 REMARK 465 ASP A 144 REMARK 465 GLU A 145 REMARK 465 ASP A 146 REMARK 465 GLY A 147 REMARK 465 VAL A 148 REMARK 465 PRO A 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 28 HD2 ASP A 29 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 30 CD GLU A 30 OE2 0.110 REMARK 500 GLU A 39 CD GLU A 39 OE2 0.109 REMARK 500 GLU A 44 CD GLU A 44 OE2 0.121 REMARK 500 GLU A 84 CD GLU A 84 OE2 0.111 REMARK 500 GLU A 100 CD GLU A 100 OE2 0.111 REMARK 500 GLU A 109 CD GLU A 109 OE2 0.110 REMARK 500 GLU A 130 CD GLU A 130 OE2 0.108 REMARK 500 GLU A 132 CD GLU A 132 OE2 0.109 REMARK 500 GLU A 135 CD GLU A 135 OE2 0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 23 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 23 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 THR A 43 CA - CB - OG1 ANGL. DEV. = 12.9 DEGREES REMARK 500 ARG A 51 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 HIS A 55 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 TRP A 59 CB - CG - CD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 TRP A 59 CD1 - NE1 - CE2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 62 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 62 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 67 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 71 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 71 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 72 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 79 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 GLU A 84 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP A 90 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 90 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 103 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 -62.98 -159.72 REMARK 500 PRO A 26 22.87 -70.77 REMARK 500 LYS A 27 -72.46 -132.26 REMARK 500 ASP A 29 27.69 87.00 REMARK 500 GLU A 30 31.51 -90.07 REMARK 500 GLU A 39 -90.69 -42.69 REMARK 500 THR A 41 -32.24 -145.29 REMARK 500 GLU A 44 175.76 73.29 REMARK 500 LYS A 73 -48.11 107.24 REMARK 500 LEU A 80 106.49 -46.01 REMARK 500 LYS A 82 -68.05 -124.84 REMARK 500 GLU A 84 138.02 95.77 REMARK 500 VAL A 85 -122.27 -95.94 REMARK 500 GLU A 100 -154.28 -95.60 REMARK 500 ALA A 111 -120.00 -143.26 REMARK 500 LYS A 120 -20.21 -152.01 REMARK 500 PRO A 123 -0.02 -55.73 REMARK 500 PHE A 136 -90.49 -147.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 110 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ROU RELATED DB: PDB DBREF 1ROT A 1 147 UNP P27124 FKBP4_RABIT 3 147 SEQADV 1ROT ASP A 4 UNP P27124 INSERTION SEQADV 1ROT ILE A 5 UNP P27124 INSERTION SEQRES 1 A 149 GLU GLU MET ASP ILE LYS ALA ALA GLU SER GLY ALA GLN SEQRES 2 A 149 SER ALA PRO LEU PRO LEU GLU GLY VAL ASP ILE SER PRO SEQRES 3 A 149 LYS GLN ASP GLU GLY VAL LEU LYS VAL ILE LYS ARG GLU SEQRES 4 A 149 GLY THR GLY THR GLU THR PRO MET ILE GLY ASP ARG VAL SEQRES 5 A 149 PHE VAL HIS TYR THR GLY TRP LEU LEU ASP GLY THR LYS SEQRES 6 A 149 PHE ASP SER SER LEU ASP ARG LYS ASP LYS PHE SER PHE SEQRES 7 A 149 ASP LEU GLY LYS GLY GLU VAL ILE LYS ALA TRP ASP ILE SEQRES 8 A 149 ALA VAL ALA THR MET LYS VAL GLY GLU LEU CYS ARG ILE SEQRES 9 A 149 THR CYS LYS PRO GLU TYR ALA TYR GLY SER ALA GLY SER SEQRES 10 A 149 PRO PRO LYS ILE PRO PRO ASN ALA THR LEU VAL PHE GLU SEQRES 11 A 149 VAL GLU LEU PHE GLU PHE LYS GLY GLU ASP LEU THR ASP SEQRES 12 A 149 ASP GLU ASP GLY VAL PRO HELIX 1 1 LYS A 87 THR A 95 1 9 HELIX 2 2 PRO A 108 TYR A 110 5 3 SHEET 1 A1 6 VAL A 22 ILE A 24 0 SHEET 2 A1 6 VAL A 32 LYS A 37 -1 N VAL A 32 O ILE A 24 SHEET 3 A1 6 LEU A 101 LYS A 107 -1 N ARG A 103 O VAL A 35 SHEET 4 A1 6 LEU A 127 LYS A 137 -1 N LEU A 127 O CYS A 106 SHEET 5 A1 6 ASP A 50 LEU A 60 -1 O TRP A 59 N VAL A 128 SHEET 6 A1 6 THR A 64 SER A 68 -1 O THR A 64 N LEU A 60 SHEET 1 A2 6 VAL A 22 ILE A 24 0 SHEET 2 A2 6 VAL A 32 LYS A 37 -1 N VAL A 32 O ILE A 24 SHEET 3 A2 6 LEU A 101 LYS A 107 -1 N ARG A 103 O VAL A 35 SHEET 4 A2 6 LEU A 127 LYS A 137 -1 N LEU A 127 O CYS A 106 SHEET 5 A2 6 ASP A 50 LEU A 60 -1 O TRP A 59 N VAL A 128 SHEET 6 A2 6 PHE A 76 LEU A 80 -1 O PHE A 76 N VAL A 54 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000