HEADER HYDROLASE(PHOSPHORIC MONOESTER) 12-JUN-93 1RPA TITLE THREE-DIMENSIONAL STRUCTURE OF RAT ACID PHOSPHATASE IN COMPLEX WITH TITLE 2 L(+) TARTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROSTATIC ACID PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.3.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116 KEYWDS HYDROLASE(PHOSPHORIC MONOESTER) EXPDTA X-RAY DIFFRACTION AUTHOR Y.LINDQVIST,G.SCHNEIDER REVDAT 5 29-JUL-20 1RPA 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 1RPA 1 VERSN REVDAT 3 24-FEB-09 1RPA 1 VERSN REVDAT 2 01-APR-03 1RPA 1 JRNL REVDAT 1 31-MAY-94 1RPA 0 JRNL AUTH Y.LINDQVIST,G.SCHNEIDER,P.VIHKO JRNL TITL THREE-DIMENSIONAL STRUCTURE OF RAT ACID PHOSPHATASE IN JRNL TITL 2 COMPLEX WITH L(+)-TARTRATE. JRNL REF J.BIOL.CHEM. V. 268 20744 1993 JRNL REFN ISSN 0021-9258 JRNL PMID 8407898 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.SCHNEIDER,Y.LINDQVIST,P.VIHKO REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF RAT ACID PHOSPHATASE REMARK 1 REF EMBO J. V. 12 2609 1993 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.VIHKO,R.KURKELA,K.PORVARI,A.HERRALA,A.LINDFORS, REMARK 1 AUTH 2 Y.LINDQVIST,G.SCHNEIDER REMARK 1 TITL RAT ACID PHOSPHATASE: OVEREXPRESSION OF ACTIVE, SECRETED REMARK 1 TITL 2 ENZYME BY RECOMBINANT BACULOVIRUS-INFECTED INSECT CELLS, REMARK 1 TITL 3 MOLECULAR PROPERTIES, AND CRYSTALLIZATION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 90 799 1993 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2794 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.022 REMARK 3 BOND ANGLES (DEGREES) : 4.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RPA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.33333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.66667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.66667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 101.33333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.66667 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 12 NE2 HIS A 12 CD2 -0.078 REMARK 500 HIS A 46 NE2 HIS A 46 CD2 -0.076 REMARK 500 HIS A 112 NE2 HIS A 112 CD2 -0.085 REMARK 500 HIS A 257 NE2 HIS A 257 CD2 -0.077 REMARK 500 HIS A 282 NE2 HIS A 282 CD2 -0.078 REMARK 500 HIS A 293 NE2 HIS A 293 CD2 -0.082 REMARK 500 HIS A 317 NE2 HIS A 317 CD2 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 6 CG1 - CB - CG2 ANGL. DEV. = -10.4 DEGREES REMARK 500 VAL A 6 CA - C - N ANGL. DEV. = 14.9 DEGREES REMARK 500 VAL A 6 O - C - N ANGL. DEV. = -10.5 DEGREES REMARK 500 LEU A 8 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 LEU A 8 CA - C - N ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 TRP A 31 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TRP A 41 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TRP A 41 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 54 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 VAL A 70 CA - C - N ANGL. DEV. = 15.2 DEGREES REMARK 500 TYR A 71 CB - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TYR A 71 CB - CG - CD1 ANGL. DEV. = -7.7 DEGREES REMARK 500 TRP A 100 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 100 CB - CG - CD1 ANGL. DEV. = -7.8 DEGREES REMARK 500 TRP A 100 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 106 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 HIS A 112 CA - C - N ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU A 121 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 LEU A 122 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 LEU A 140 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 148 CA - CB - CG ANGL. DEV. = -14.5 DEGREES REMARK 500 ASP A 167 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 TRP A 174 CD1 - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 176 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 176 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR A 178 CB - CG - CD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 TYR A 178 CB - CG - CD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 194 CD1 - CG - CD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 TRP A 194 CG - CD1 - NE1 ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP A 194 CE2 - CD2 - CG ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP A 194 CG - CD2 - CE3 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 225 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 225 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 LYS A 247 CA - CB - CG ANGL. DEV. = -15.7 DEGREES REMARK 500 ARG A 249 CA - CB - CG ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG A 249 CA - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 SER A 255 N - CA - CB ANGL. DEV. = 10.4 DEGREES REMARK 500 MET A 266 CG - SD - CE ANGL. DEV. = -12.1 DEGREES REMARK 500 HIS A 282 CA - C - N ANGL. DEV. = 13.3 DEGREES REMARK 500 ASP A 289 CA - C - N ANGL. DEV. = -15.3 DEGREES REMARK 500 ASN A 290 CA - C - N ANGL. DEV. = 14.7 DEGREES REMARK 500 LEU A 328 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ASP A 335 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 335 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 TRP A 336 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 54 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 63 39.54 33.82 REMARK 500 HIS A 67 -20.97 -39.65 REMARK 500 LEU A 105 75.14 -107.50 REMARK 500 LEU A 121 -87.12 -122.55 REMARK 500 TYR A 123 56.27 -90.05 REMARK 500 ASP A 128 24.66 -60.69 REMARK 500 GLU A 143 -82.87 -30.37 REMARK 500 LEU A 177 -51.06 -132.94 REMARK 500 ILE A 217 -73.18 27.49 REMARK 500 GLN A 227 -107.24 -146.31 REMARK 500 ARG A 249 119.88 -161.83 REMARK 500 LYS A 250 -114.37 -96.26 REMARK 500 ALA A 256 -150.35 -128.75 REMARK 500 ASP A 269 53.26 73.28 REMARK 500 ASN A 290 -89.58 26.05 REMARK 500 SER A 318 69.77 -105.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 244 PRO A 245 -124.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 65 0.11 SIDE CHAIN REMARK 500 TYR A 182 0.08 SIDE CHAIN REMARK 500 TYR A 278 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE ADVISORY NOTICE REMARK 999 DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. REMARK 999 REMARK 999 SWISS-PROT ENTRY NAME: PPAP_RAT REMARK 999 REMARK 999 SWISS-PROT RESIDUE PDB SEQRES REMARK 999 REMARK 999 NAME NUMBER NAME CHAIN SEQ/INSERT CODE REMARK 999 ILE 128 ASN 97 REMARK 999 PHE 222 LEU 191 REMARK 999 ARG 223 PRO 192 REMARK 999 REMARK 999 THE DEPOSITORS BELIEVE THAT THE SEQUENCE PRESENTED IN THIS REMARK 999 ENTRY IS CORRECT AND THAT THE SWISS-PROT SEQUENCE IS REMARK 999 INCORRECT. DBREF 1RPA A 1 342 UNP P20646 PPAP_RAT 32 373 SEQADV 1RPA ASN A 97 UNP P20646 ILE 128 CONFLICT SEQADV 1RPA LEU A 191 UNP P20646 PHE 222 CONFLICT SEQADV 1RPA PRO A 192 UNP P20646 ARG 223 CONFLICT SEQADV 1RPA HIS A 257 UNP P20646 TYR 288 CONFLICT SEQADV 1RPA ASP A 269 UNP P20646 GLU 300 CONFLICT SEQADV 1RPA VAL A 270 UNP P20646 LEU 301 CONFLICT SEQADV 1RPA HIS A 293 UNP P20646 THR 324 CONFLICT SEQRES 1 A 342 LYS GLU LEU LYS PHE VAL THR LEU VAL PHE ARG HIS GLY SEQRES 2 A 342 ASP ARG GLY PRO ILE GLU THR PHE PRO ASN ASP PRO ILE SEQRES 3 A 342 LYS GLU SER SER TRP PRO GLN GLY PHE GLY GLN LEU THR SEQRES 4 A 342 LYS TRP GLY MET GLY GLN HIS TYR GLU LEU GLY SER TYR SEQRES 5 A 342 ILE ARG ARG ARG TYR GLY ARG PHE LEU ASN ASN SER TYR SEQRES 6 A 342 LYS HIS ASP GLN VAL TYR ILE ARG SER THR ASP VAL ASP SEQRES 7 A 342 ARG THR LEU MET SER ALA MET THR ASN LEU ALA ALA LEU SEQRES 8 A 342 PHE PRO PRO GLU GLY ASN SER ILE TRP ASN PRO ARG LEU SEQRES 9 A 342 LEU TRP GLN PRO ILE PRO VAL HIS THR VAL SER LEU SER SEQRES 10 A 342 GLU ASP ARG LEU LEU TYR LEU PRO PHE ARG ASP CYS PRO SEQRES 11 A 342 ARG PHE GLN GLU LEU LYS SER GLU THR LEU LYS SER GLU SEQRES 12 A 342 GLU PHE LEU LYS ARG LEU GLN PRO TYR LYS SER PHE ILE SEQRES 13 A 342 ASP THR LEU PRO SER LEU SER GLY PHE GLU ASP GLN ASP SEQRES 14 A 342 LEU PHE GLU ILE TRP SER ARG LEU TYR ASP PRO LEU TYR SEQRES 15 A 342 CYS GLU SER VAL HIS ASN PHE THR LEU PRO THR TRP ALA SEQRES 16 A 342 THR GLU ASP ALA MET THR LYS LEU LYS GLU LEU SER GLU SEQRES 17 A 342 LEU SER LEU LEU SER LEU TYR GLY ILE HIS LYS GLN LYS SEQRES 18 A 342 GLU LYS SER ARG LEU GLN GLY GLY VAL LEU VAL ASN GLU SEQRES 19 A 342 ILE LEU LYS ASN MET LYS LEU ALA THR GLN PRO GLN LYS SEQRES 20 A 342 ALA ARG LYS LEU ILE MET TYR SER ALA HIS ASP THR THR SEQRES 21 A 342 VAL SER GLY LEU GLN MET ALA LEU ASP VAL TYR ASN GLY SEQRES 22 A 342 LEU LEU PRO PRO TYR ALA SER CYS HIS ILE MET GLU LEU SEQRES 23 A 342 TYR GLN ASP ASN GLY GLY HIS PHE VAL GLU MET TYR TYR SEQRES 24 A 342 ARG ASN GLU THR GLN ASN GLU PRO TYR PRO LEU THR LEU SEQRES 25 A 342 PRO GLY CYS THR HIS SER CYS PRO LEU GLU LYS PHE ALA SEQRES 26 A 342 GLU LEU LEU ASP PRO VAL ILE PRO GLN ASP TRP ALA THR SEQRES 27 A 342 GLU CYS MET GLY MODRES 1RPA ASN A 62 ASN GLYCOSYLATION SITE MODRES 1RPA ASN A 301 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG A 347 14 HET TAR A 343 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM TAR D(-)-TARTARIC ACID FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 4 TAR C4 H6 O6 HELIX 1 H1 LYS A 40 LEU A 61 1 22 HELIX 2 H2 ASP A 78 LEU A 91 1 14 HELIX 3 H3 PRO A 130 LYS A 141 1 12 HELIX 4 H4 GLU A 143 LEU A 149 1 7 HELIX 5 H5 LYS A 153 SER A 163 1EXTRA RESIDUE AT POS 159 11 HELIX 6 H6A LEU A 170 ARG A 176 1 7 HELIX 7 H6B TYR A 178 SER A 185 1 8 HELIX 8 H7 GLU A 197 TYR A 215 1 19 HELIX 9 H8 GLN A 220 ARG A 225 1 6 HELIX 10 H9 GLY A 228 LEU A 241 1 14 HELIX 11 H10 ASP A 258 LEU A 268 1 11 HELIX 12 H11 LEU A 321 LEU A 328 1 8 HELIX 13 H12 TRP A 336 GLU A 339 1 4 SHEET 1 S1A 7 HIS A 112 VAL A 114 0 SHEET 2 S1A 7 VAL A 70 SER A 74 1 N SER A 74 O HIS A 112 SHEET 3 S1A 7 LEU A 251 ALA A 256 1 O MET A 253 N ARG A 73 SHEET 4 S1A 7 LEU A 3 ARG A 11 1 N PHE A 10 O TYR A 254 SHEET 5 S1A 7 CYS A 281 ASP A 289 -1 O HIS A 282 N VAL A 9 SHEET 6 S1A 7 GLY A 292 ARG A 300 -1 N ARG A 300 O CYS A 281 SHEET 7 S1A 7 TYR A 308 LEU A 310 -1 O TYR A 308 N TYR A 299 SHEET 1 S1B 7 HIS A 112 VAL A 114 0 SHEET 2 S1B 7 VAL A 70 SER A 74 1 N SER A 74 O HIS A 112 SHEET 3 S1B 7 LEU A 251 ALA A 256 1 O MET A 253 N ARG A 73 SHEET 4 S1B 7 LEU A 3 ARG A 11 1 N PHE A 10 O TYR A 254 SHEET 5 S1B 7 CYS A 281 ASP A 289 -1 O HIS A 282 N VAL A 9 SHEET 6 S1B 7 GLY A 292 ARG A 300 -1 N ARG A 300 O CYS A 281 SHEET 7 S1B 7 CYS A 319 LEU A 321 -1 O CYS A 319 N VAL A 295 SSBOND 1 CYS A 129 CYS A 340 1555 1555 2.00 SSBOND 2 CYS A 315 CYS A 319 1555 1555 2.04 LINK ND2 ASN A 62 C1 NAG A 347 1555 1555 1.49 LINK ND2 ASN A 301 C1 NAG B 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.42 CISPEP 1 LEU A 124 PRO A 125 0 0.86 CRYST1 89.400 89.400 152.000 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011186 0.006458 0.000000 0.00000 SCALE2 0.000000 0.012916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006579 0.00000