data_1RPE # _entry.id 1RPE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RPE pdb_00001rpe 10.2210/pdb1rpe/pdb RCSB PDR011 ? ? WWPDB D_1000176175 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-01-31 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RPE _pdbx_database_status.recvd_initial_deposition_date 1993-03-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shimon, L.J.W.' 1 'Harrison, S.C.' 2 # _citation.id primary _citation.title 'The phage 434 OR2/R1-69 complex at 2.5 A resolution.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 232 _citation.page_first 826 _citation.page_last 838 _citation.year 1993 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8355273 _citation.pdbx_database_id_DOI 10.1006/jmbi.1993.1434 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shimon, L.J.' 1 ? primary 'Harrison, S.C.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*TP*GP*TP*AP*TP*CP*TP*TP*GP*T P*TP*TP*G)-3') ; 6128.986 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*CP*AP*AP*AP*CP*AP*AP*GP*AP*TP*AP*CP*AP*TP*TP*G P*TP*AP*T)-3') ; 6134.032 1 ? ? ? ? 3 polymer nat 'PROTEIN (434 REPRESSOR)' 7560.542 2 ? ? ? ? 4 water nat water 18.015 36 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DA)(DT)(DA)(DC)(DA)(DA)(DT)(DG)(DT)(DA)(DT)(DC)(DT)(DT)(DG)(DT)(DT)(DT)(DG)' TATACAATGTATCTTGTTTG B ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DA)(DA)(DA)(DC)(DA)(DA)(DG)(DA)(DT)(DA)(DC)(DA)(DT)(DT)(DG)(DT)(DA)(DT)' ACAAACAAGATACATTGTAT A ? 3 'polypeptide(L)' no no SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLNGTSDSNVR SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLNGTSDSNVR L,R ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DA n 1 7 DA n 1 8 DT n 1 9 DG n 1 10 DT n 1 11 DA n 1 12 DT n 1 13 DC n 1 14 DT n 1 15 DT n 1 16 DG n 1 17 DT n 1 18 DT n 1 19 DT n 1 20 DG n 2 1 DA n 2 2 DC n 2 3 DA n 2 4 DA n 2 5 DA n 2 6 DC n 2 7 DA n 2 8 DA n 2 9 DG n 2 10 DA n 2 11 DT n 2 12 DA n 2 13 DC n 2 14 DA n 2 15 DT n 2 16 DT n 2 17 DG n 2 18 DT n 2 19 DA n 2 20 DT n 3 1 SER n 3 2 ILE n 3 3 SER n 3 4 SER n 3 5 ARG n 3 6 VAL n 3 7 LYS n 3 8 SER n 3 9 LYS n 3 10 ARG n 3 11 ILE n 3 12 GLN n 3 13 LEU n 3 14 GLY n 3 15 LEU n 3 16 ASN n 3 17 GLN n 3 18 ALA n 3 19 GLU n 3 20 LEU n 3 21 ALA n 3 22 GLN n 3 23 LYS n 3 24 VAL n 3 25 GLY n 3 26 THR n 3 27 THR n 3 28 GLN n 3 29 GLN n 3 30 SER n 3 31 ILE n 3 32 GLU n 3 33 GLN n 3 34 LEU n 3 35 GLU n 3 36 ASN n 3 37 GLY n 3 38 LYS n 3 39 THR n 3 40 LYS n 3 41 ARG n 3 42 PRO n 3 43 ARG n 3 44 PHE n 3 45 LEU n 3 46 PRO n 3 47 GLU n 3 48 LEU n 3 49 ALA n 3 50 SER n 3 51 ALA n 3 52 LEU n 3 53 GLY n 3 54 VAL n 3 55 SER n 3 56 VAL n 3 57 ASP n 3 58 TRP n 3 59 LEU n 3 60 LEU n 3 61 ASN n 3 62 GLY n 3 63 THR n 3 64 SER n 3 65 ASP n 3 66 SER n 3 67 ASN n 3 68 VAL n 3 69 ARG n # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Phage 434' _entity_src_nat.pdbx_ncbi_taxonomy_id 10712 _entity_src_nat.genus 'Lambda-like viruses' _entity_src_nat.species 'Enterobacteria phage lambda' _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T B . n A 1 2 DA 2 2 2 DA A B . n A 1 3 DT 3 3 3 DT T B . n A 1 4 DA 4 4 4 DA A B . n A 1 5 DC 5 5 5 DC C B . n A 1 6 DA 6 6 6 DA A B . n A 1 7 DA 7 7 7 DA A B . n A 1 8 DT 8 8 8 DT T B . n A 1 9 DG 9 9 9 DG G B . n A 1 10 DT 10 10 10 DT T B . n A 1 11 DA 11 11 11 DA A B . n A 1 12 DT 12 12 12 DT T B . n A 1 13 DC 13 13 13 DC C B . n A 1 14 DT 14 14 14 DT T B . n A 1 15 DT 15 15 15 DT T B . n A 1 16 DG 16 16 16 DG G B . n A 1 17 DT 17 17 17 DT T B . n A 1 18 DT 18 18 18 DT T B . n A 1 19 DT 19 19 19 DT T B . n A 1 20 DG 20 20 20 DG G B . n B 2 1 DA 1 21 21 DA A A . n B 2 2 DC 2 22 22 DC C A . n B 2 3 DA 3 23 23 DA A A . n B 2 4 DA 4 24 24 DA A A . n B 2 5 DA 5 25 25 DA A A . n B 2 6 DC 6 26 26 DC C A . n B 2 7 DA 7 27 27 DA A A . n B 2 8 DA 8 28 28 DA A A . n B 2 9 DG 9 29 29 DG G A . n B 2 10 DA 10 30 30 DA A A . n B 2 11 DT 11 31 31 DT T A . n B 2 12 DA 12 32 32 DA A A . n B 2 13 DC 13 33 33 DC C A . n B 2 14 DA 14 34 34 DA A A . n B 2 15 DT 15 35 35 DT T A . n B 2 16 DT 16 36 36 DT T A . n B 2 17 DG 17 37 37 DG G A . n B 2 18 DT 18 38 38 DT T A . n B 2 19 DA 19 39 39 DA A A . n B 2 20 DT 20 40 40 DT T A . n C 3 1 SER 1 1 1 SER SER L . n C 3 2 ILE 2 2 2 ILE ILE L . n C 3 3 SER 3 3 3 SER SER L . n C 3 4 SER 4 4 4 SER SER L . n C 3 5 ARG 5 5 5 ARG ARG L . n C 3 6 VAL 6 6 6 VAL VAL L . n C 3 7 LYS 7 7 7 LYS LYS L . n C 3 8 SER 8 8 8 SER SER L . n C 3 9 LYS 9 9 9 LYS LYS L . n C 3 10 ARG 10 10 10 ARG ARG L . n C 3 11 ILE 11 11 11 ILE ILE L . n C 3 12 GLN 12 12 12 GLN GLN L . n C 3 13 LEU 13 13 13 LEU LEU L . n C 3 14 GLY 14 14 14 GLY GLY L . n C 3 15 LEU 15 15 15 LEU LEU L . n C 3 16 ASN 16 16 16 ASN ASN L . n C 3 17 GLN 17 17 17 GLN GLN L . n C 3 18 ALA 18 18 18 ALA ALA L . n C 3 19 GLU 19 19 19 GLU GLU L . n C 3 20 LEU 20 20 20 LEU LEU L . n C 3 21 ALA 21 21 21 ALA ALA L . n C 3 22 GLN 22 22 22 GLN GLN L . n C 3 23 LYS 23 23 23 LYS LYS L . n C 3 24 VAL 24 24 24 VAL VAL L . n C 3 25 GLY 25 25 25 GLY GLY L . n C 3 26 THR 26 26 26 THR THR L . n C 3 27 THR 27 27 27 THR THR L . n C 3 28 GLN 28 28 28 GLN GLN L . n C 3 29 GLN 29 29 29 GLN GLN L . n C 3 30 SER 30 30 30 SER SER L . n C 3 31 ILE 31 31 31 ILE ILE L . n C 3 32 GLU 32 32 32 GLU GLU L . n C 3 33 GLN 33 33 33 GLN GLN L . n C 3 34 LEU 34 34 34 LEU LEU L . n C 3 35 GLU 35 35 35 GLU GLU L . n C 3 36 ASN 36 36 36 ASN ASN L . n C 3 37 GLY 37 37 37 GLY GLY L . n C 3 38 LYS 38 38 38 LYS LYS L . n C 3 39 THR 39 39 39 THR THR L . n C 3 40 LYS 40 40 40 LYS LYS L . n C 3 41 ARG 41 41 41 ARG ARG L . n C 3 42 PRO 42 42 42 PRO PRO L . n C 3 43 ARG 43 43 43 ARG ARG L . n C 3 44 PHE 44 44 44 PHE PHE L . n C 3 45 LEU 45 45 45 LEU LEU L . n C 3 46 PRO 46 46 46 PRO PRO L . n C 3 47 GLU 47 47 47 GLU GLU L . n C 3 48 LEU 48 48 48 LEU LEU L . n C 3 49 ALA 49 49 49 ALA ALA L . n C 3 50 SER 50 50 50 SER SER L . n C 3 51 ALA 51 51 51 ALA ALA L . n C 3 52 LEU 52 52 52 LEU LEU L . n C 3 53 GLY 53 53 53 GLY GLY L . n C 3 54 VAL 54 54 54 VAL VAL L . n C 3 55 SER 55 55 55 SER SER L . n C 3 56 VAL 56 56 56 VAL VAL L . n C 3 57 ASP 57 57 57 ASP ASP L . n C 3 58 TRP 58 58 58 TRP TRP L . n C 3 59 LEU 59 59 59 LEU LEU L . n C 3 60 LEU 60 60 60 LEU LEU L . n C 3 61 ASN 61 61 61 ASN ASN L . n C 3 62 GLY 62 62 62 GLY GLY L . n C 3 63 THR 63 63 63 THR THR L . n C 3 64 SER 64 64 ? ? ? L . n C 3 65 ASP 65 65 ? ? ? L . n C 3 66 SER 66 66 ? ? ? L . n C 3 67 ASN 67 67 ? ? ? L . n C 3 68 VAL 68 68 ? ? ? L . n C 3 69 ARG 69 69 ? ? ? L . n D 3 1 SER 1 1 1 SER SER R . n D 3 2 ILE 2 2 2 ILE ILE R . n D 3 3 SER 3 3 3 SER SER R . n D 3 4 SER 4 4 4 SER SER R . n D 3 5 ARG 5 5 5 ARG ARG R . n D 3 6 VAL 6 6 6 VAL VAL R . n D 3 7 LYS 7 7 7 LYS LYS R . n D 3 8 SER 8 8 8 SER SER R . n D 3 9 LYS 9 9 9 LYS LYS R . n D 3 10 ARG 10 10 10 ARG ARG R . n D 3 11 ILE 11 11 11 ILE ILE R . n D 3 12 GLN 12 12 12 GLN GLN R . n D 3 13 LEU 13 13 13 LEU LEU R . n D 3 14 GLY 14 14 14 GLY GLY R . n D 3 15 LEU 15 15 15 LEU LEU R . n D 3 16 ASN 16 16 16 ASN ASN R . n D 3 17 GLN 17 17 17 GLN GLN R . n D 3 18 ALA 18 18 18 ALA ALA R . n D 3 19 GLU 19 19 19 GLU GLU R . n D 3 20 LEU 20 20 20 LEU LEU R . n D 3 21 ALA 21 21 21 ALA ALA R . n D 3 22 GLN 22 22 22 GLN GLN R . n D 3 23 LYS 23 23 23 LYS LYS R . n D 3 24 VAL 24 24 24 VAL VAL R . n D 3 25 GLY 25 25 25 GLY GLY R . n D 3 26 THR 26 26 26 THR THR R . n D 3 27 THR 27 27 27 THR THR R . n D 3 28 GLN 28 28 28 GLN GLN R . n D 3 29 GLN 29 29 29 GLN GLN R . n D 3 30 SER 30 30 30 SER SER R . n D 3 31 ILE 31 31 31 ILE ILE R . n D 3 32 GLU 32 32 32 GLU GLU R . n D 3 33 GLN 33 33 33 GLN GLN R . n D 3 34 LEU 34 34 34 LEU LEU R . n D 3 35 GLU 35 35 35 GLU GLU R . n D 3 36 ASN 36 36 36 ASN ASN R . n D 3 37 GLY 37 37 37 GLY GLY R . n D 3 38 LYS 38 38 38 LYS LYS R . n D 3 39 THR 39 39 39 THR THR R . n D 3 40 LYS 40 40 40 LYS LYS R . n D 3 41 ARG 41 41 41 ARG ARG R . n D 3 42 PRO 42 42 42 PRO PRO R . n D 3 43 ARG 43 43 43 ARG ARG R . n D 3 44 PHE 44 44 44 PHE PHE R . n D 3 45 LEU 45 45 45 LEU LEU R . n D 3 46 PRO 46 46 46 PRO PRO R . n D 3 47 GLU 47 47 47 GLU GLU R . n D 3 48 LEU 48 48 48 LEU LEU R . n D 3 49 ALA 49 49 49 ALA ALA R . n D 3 50 SER 50 50 50 SER SER R . n D 3 51 ALA 51 51 51 ALA ALA R . n D 3 52 LEU 52 52 52 LEU LEU R . n D 3 53 GLY 53 53 53 GLY GLY R . n D 3 54 VAL 54 54 54 VAL VAL R . n D 3 55 SER 55 55 55 SER SER R . n D 3 56 VAL 56 56 56 VAL VAL R . n D 3 57 ASP 57 57 57 ASP ASP R . n D 3 58 TRP 58 58 58 TRP TRP R . n D 3 59 LEU 59 59 59 LEU LEU R . n D 3 60 LEU 60 60 60 LEU LEU R . n D 3 61 ASN 61 61 61 ASN ASN R . n D 3 62 GLY 62 62 62 GLY GLY R . n D 3 63 THR 63 63 63 THR THR R . n D 3 64 SER 64 64 ? ? ? R . n D 3 65 ASP 65 65 ? ? ? R . n D 3 66 SER 66 66 ? ? ? R . n D 3 67 ASN 67 67 ? ? ? R . n D 3 68 VAL 68 68 ? ? ? R . n D 3 69 ARG 69 69 ? ? ? R . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 21 1 HOH HOH B . E 4 HOH 2 22 7 HOH HOH B . E 4 HOH 3 23 17 HOH HOH B . E 4 HOH 4 24 18 HOH HOH B . E 4 HOH 5 25 21 HOH HOH B . E 4 HOH 6 26 23 HOH HOH B . E 4 HOH 7 27 26 HOH HOH B . F 4 HOH 1 41 8 HOH HOH A . F 4 HOH 2 42 9 HOH HOH A . F 4 HOH 3 43 10 HOH HOH A . F 4 HOH 4 44 12 HOH HOH A . F 4 HOH 5 45 14 HOH HOH A . F 4 HOH 6 46 15 HOH HOH A . F 4 HOH 7 47 20 HOH HOH A . F 4 HOH 8 48 22 HOH HOH A . F 4 HOH 9 49 25 HOH HOH A . F 4 HOH 10 50 29 HOH HOH A . F 4 HOH 11 51 32 HOH HOH A . F 4 HOH 12 52 34 HOH HOH A . F 4 HOH 13 53 35 HOH HOH A . F 4 HOH 14 54 46 HOH HOH A . G 4 HOH 1 70 4 HOH HOH L . G 4 HOH 2 71 5 HOH HOH L . G 4 HOH 3 72 11 HOH HOH L . G 4 HOH 4 73 13 HOH HOH L . G 4 HOH 5 74 24 HOH HOH L . G 4 HOH 6 75 27 HOH HOH L . G 4 HOH 7 76 28 HOH HOH L . G 4 HOH 8 77 31 HOH HOH L . H 4 HOH 1 70 2 HOH HOH R . H 4 HOH 2 71 3 HOH HOH R . H 4 HOH 3 72 6 HOH HOH R . H 4 HOH 4 73 16 HOH HOH R . H 4 HOH 5 74 19 HOH HOH R . H 4 HOH 6 75 30 HOH HOH R . H 4 HOH 7 76 33 HOH HOH R . # _software.name CORELS _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1RPE _cell.length_a 149.290 _cell.length_b 64.290 _cell.length_c 27.690 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RPE _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1RPE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 49.30 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.70 _exptl_crystal_grow.pdbx_details 'pH 5.70, VAPOR DIFFUSION, HANGING DROP, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'PEG 3000' ? ? ? 1 3 1 NACL ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 MES ? ? ? 1 6 1 '[CO(NH3)6]3+' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 277.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ELLIOTT GX-13' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1RPE _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.500 _reflns.number_obs 6984 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1RPE _refine.ls_number_reflns_obs 6984 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.500 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 5.500 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs 70.200 _refine.ls_R_factor_obs 0.2090000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 968 _refine_hist.pdbx_number_atoms_nucleic_acid 814 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 1818 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 5.500 # _database_PDB_matrix.entry_id 1RPE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1RPE _struct.title 'THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RPE _struct_keywords.pdbx_keywords 'GENE REGULATION/DNA' _struct_keywords.text 'PROTEIN-DNA COMPLEX, DOUBLE HELIX, GENE REGULATION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP RPC1_BP434 P16117 3 1 ? ? 2 PDB 1RPE 1RPE 1 ? ? ? 3 PDB 1RPE 1RPE 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1RPE L 1 ? 69 ? P16117 1 ? 69 ? 1 69 2 1 1RPE R 1 ? 69 ? P16117 1 ? 69 ? 1 69 3 2 1RPE B 1 ? 20 ? 1RPE 1 ? 20 ? 1 20 4 3 1RPE A 1 ? 20 ? 1RPE 21 ? 40 ? 21 40 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 L1 SER C 1 ? GLN C 12 ? SER L 1 GLN L 12 1 ? 12 HELX_P HELX_P2 L2 GLN C 17 ? LYS C 23 ? GLN L 17 LYS L 23 1 ? 7 HELX_P HELX_P3 L3 GLN C 28 ? ASN C 36 ? GLN L 28 ASN L 36 1 ? 9 HELX_P HELX_P4 L4 LEU C 45 ? ALA C 51 ? LEU L 45 ALA L 51 1 ? 7 HELX_P HELX_P5 L5 VAL C 56 ? ASN C 61 ? VAL L 56 ASN L 61 1 ? 6 HELX_P HELX_P6 R1 SER D 1 ? GLN D 12 ? SER R 1 GLN R 12 1 ? 12 HELX_P HELX_P7 R2 GLN D 17 ? LYS D 23 ? GLN R 17 LYS R 23 1 ? 7 HELX_P HELX_P8 R3 GLN D 28 ? ASN D 36 ? GLN R 28 ASN R 36 1 ? 9 HELX_P HELX_P9 R4 LEU D 45 ? ALA D 51 ? LEU R 45 ALA R 51 1 ? 7 HELX_P HELX_P10 R5 VAL D 56 ? ASN D 61 ? VAL R 56 ASN R 61 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 20 N3 ? ? B DA 2 A DT 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 20 O4 ? ? B DA 2 A DT 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 19 N1 ? ? B DT 3 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 19 N6 ? ? B DT 3 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 18 N3 ? ? B DA 4 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 18 O4 ? ? B DA 4 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 17 N1 ? ? B DC 5 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 17 O6 ? ? B DC 5 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 17 N2 ? ? B DC 5 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 16 N3 ? ? B DA 6 A DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 16 O4 ? ? B DA 6 A DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 15 N3 ? ? B DA 7 A DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 15 O4 ? ? B DA 7 A DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 14 N1 ? ? B DT 8 A DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 14 N6 ? ? B DT 8 A DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 13 N3 ? ? B DG 9 A DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 13 O2 ? ? B DG 9 A DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 13 N4 ? ? B DG 9 A DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 12 N1 ? ? B DT 10 A DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 12 N6 ? ? B DT 10 A DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 11 N3 ? ? B DA 11 A DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 11 O4 ? ? B DA 11 A DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 12 A DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 12 A DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 9 N1 ? ? B DC 13 A DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 9 O6 ? ? B DC 13 A DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 9 N2 ? ? B DC 13 A DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 8 N1 ? ? B DT 14 A DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 8 N6 ? ? B DT 14 A DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 7 N1 ? ? B DT 15 A DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 7 N6 ? ? B DT 15 A DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 16 N1 ? ? ? 1_555 B DC 6 N3 ? ? B DG 16 A DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 16 N2 ? ? ? 1_555 B DC 6 O2 ? ? B DG 16 A DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 16 O6 ? ? ? 1_555 B DC 6 N4 ? ? B DG 16 A DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 17 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 17 A DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DT 17 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 17 A DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 18 N3 ? ? ? 1_555 B DA 4 N1 ? ? B DT 18 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DT 18 O4 ? ? ? 1_555 B DA 4 N6 ? ? B DT 18 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DT 19 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 19 A DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DT 19 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 19 A DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 20 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 20 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 20 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 20 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 20 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 20 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 L _pdbx_validate_close_contact.auth_comp_id_1 ALA _pdbx_validate_close_contact.auth_seq_id_1 21 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 L _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 26 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N3 B DT 1 ? ? 1_555 N1 A DA 21 ? ? 1_545 2.12 2 1 "O3'" A DA 21 ? ? 1_555 O B HOH 22 ? ? 1_565 2.15 3 1 N3 B DT 1 ? ? 1_555 C2 A DA 21 ? ? 1_545 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B DT 10 ? ? "C3'" B DT 10 ? ? 1.343 1.419 -0.076 0.006 N 2 1 "O3'" B DT 12 ? ? "C3'" B DT 12 ? ? 1.354 1.419 -0.065 0.006 N 3 1 "O3'" A DA 24 ? ? "C3'" A DA 24 ? ? 1.381 1.419 -0.038 0.006 N 4 1 C5 A DA 24 ? ? N7 A DA 24 ? ? 1.350 1.388 -0.038 0.006 N 5 1 "O3'" A DA 30 ? ? "C3'" A DA 30 ? ? 1.383 1.419 -0.036 0.006 N 6 1 "O3'" A DT 31 ? ? "C3'" A DT 31 ? ? 1.372 1.419 -0.047 0.006 N 7 1 CD L GLU 32 ? ? OE1 L GLU 32 ? ? 1.322 1.252 0.070 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 P B DA 2 ? ? "O5'" B DA 2 ? ? "C5'" B DA 2 ? ? 110.98 120.90 -9.92 1.60 N 2 1 "C3'" B DC 5 ? ? "O3'" B DC 5 ? ? P B DA 6 ? ? 128.77 119.70 9.07 1.20 Y 3 1 "O4'" B DT 10 ? ? "C1'" B DT 10 ? ? "C2'" B DT 10 ? ? 100.98 105.90 -4.92 0.80 N 4 1 P B DA 11 ? ? "O5'" B DA 11 ? ? "C5'" B DA 11 ? ? 111.14 120.90 -9.76 1.60 N 5 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 111.30 108.30 3.00 0.30 N 6 1 "C3'" B DC 13 ? ? "O3'" B DC 13 ? ? P B DT 14 ? ? 128.13 119.70 8.43 1.20 Y 7 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 100.04 108.00 -7.96 0.70 N 8 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.14 108.30 1.84 0.30 N 9 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 112.10 108.30 3.80 0.30 N 10 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 111.84 108.30 3.54 0.30 N 11 1 "O4'" A DA 21 ? ? "C1'" A DA 21 ? ? N9 A DA 21 ? ? 111.95 108.30 3.65 0.30 N 12 1 "O4'" A DC 22 ? ? "C1'" A DC 22 ? ? N1 A DC 22 ? ? 112.12 108.30 3.82 0.30 N 13 1 "C3'" A DC 22 ? ? "O3'" A DC 22 ? ? P A DA 23 ? ? 110.66 119.70 -9.04 1.20 Y 14 1 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 110.82 108.30 2.52 0.30 N 15 1 "O4'" A DC 26 ? ? "C1'" A DC 26 ? ? N1 A DC 26 ? ? 102.68 108.00 -5.32 0.70 N 16 1 "C3'" A DA 32 ? ? "O3'" A DA 32 ? ? P A DC 33 ? ? 128.16 119.70 8.46 1.20 Y 17 1 "O4'" A DC 33 ? ? "C1'" A DC 33 ? ? N1 A DC 33 ? ? 110.29 108.30 1.99 0.30 N 18 1 "C3'" A DA 34 ? ? "O3'" A DA 34 ? ? P A DT 35 ? ? 129.05 119.70 9.35 1.20 Y 19 1 "O4'" A DG 37 ? ? "C1'" A DG 37 ? ? N9 A DG 37 ? ? 110.44 108.30 2.14 0.30 N 20 1 "O4'" A DT 40 ? ? "C1'" A DT 40 ? ? N1 A DT 40 ? ? 113.34 108.30 5.04 0.30 N 21 1 NE L ARG 5 ? ? CZ L ARG 5 ? ? NH2 L ARG 5 ? ? 123.98 120.30 3.68 0.50 N 22 1 NE L ARG 41 ? ? CZ L ARG 41 ? ? NH1 L ARG 41 ? ? 124.55 120.30 4.25 0.50 N 23 1 NE L ARG 41 ? ? CZ L ARG 41 ? ? NH2 L ARG 41 ? ? 117.15 120.30 -3.15 0.50 N 24 1 NE R ARG 10 ? ? CZ R ARG 10 ? ? NH2 R ARG 10 ? ? 123.98 120.30 3.68 0.50 N 25 1 NE R ARG 41 ? ? CZ R ARG 41 ? ? NH2 R ARG 41 ? ? 123.91 120.30 3.61 0.50 N 26 1 NE R ARG 43 ? ? CZ R ARG 43 ? ? NH2 R ARG 43 ? ? 123.77 120.30 3.47 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN L 17 ? ? -33.39 -29.34 2 1 ALA L 21 ? ? -59.19 -8.70 3 1 THR L 26 ? ? -101.47 -163.37 4 1 LEU L 34 ? ? -60.51 -70.71 5 1 LYS R 9 ? ? -54.33 -4.66 6 1 LYS R 40 ? ? -82.91 -71.54 7 1 LEU R 60 ? ? -60.96 -73.73 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L SER 64 ? C SER 64 2 1 Y 1 L ASP 65 ? C ASP 65 3 1 Y 1 L SER 66 ? C SER 66 4 1 Y 1 L ASN 67 ? C ASN 67 5 1 Y 1 L VAL 68 ? C VAL 68 6 1 Y 1 L ARG 69 ? C ARG 69 7 1 Y 1 R SER 64 ? D SER 64 8 1 Y 1 R ASP 65 ? D ASP 65 9 1 Y 1 R SER 66 ? D SER 66 10 1 Y 1 R ASN 67 ? D ASN 67 11 1 Y 1 R VAL 68 ? D VAL 68 12 1 Y 1 R ARG 69 ? D ARG 69 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HOH O O N N 266 HOH H1 H N N 267 HOH H2 H N N 268 ILE N N N N 269 ILE CA C N S 270 ILE C C N N 271 ILE O O N N 272 ILE CB C N S 273 ILE CG1 C N N 274 ILE CG2 C N N 275 ILE CD1 C N N 276 ILE OXT O N N 277 ILE H H N N 278 ILE H2 H N N 279 ILE HA H N N 280 ILE HB H N N 281 ILE HG12 H N N 282 ILE HG13 H N N 283 ILE HG21 H N N 284 ILE HG22 H N N 285 ILE HG23 H N N 286 ILE HD11 H N N 287 ILE HD12 H N N 288 ILE HD13 H N N 289 ILE HXT H N N 290 LEU N N N N 291 LEU CA C N S 292 LEU C C N N 293 LEU O O N N 294 LEU CB C N N 295 LEU CG C N N 296 LEU CD1 C N N 297 LEU CD2 C N N 298 LEU OXT O N N 299 LEU H H N N 300 LEU H2 H N N 301 LEU HA H N N 302 LEU HB2 H N N 303 LEU HB3 H N N 304 LEU HG H N N 305 LEU HD11 H N N 306 LEU HD12 H N N 307 LEU HD13 H N N 308 LEU HD21 H N N 309 LEU HD22 H N N 310 LEU HD23 H N N 311 LEU HXT H N N 312 LYS N N N N 313 LYS CA C N S 314 LYS C C N N 315 LYS O O N N 316 LYS CB C N N 317 LYS CG C N N 318 LYS CD C N N 319 LYS CE C N N 320 LYS NZ N N N 321 LYS OXT O N N 322 LYS H H N N 323 LYS H2 H N N 324 LYS HA H N N 325 LYS HB2 H N N 326 LYS HB3 H N N 327 LYS HG2 H N N 328 LYS HG3 H N N 329 LYS HD2 H N N 330 LYS HD3 H N N 331 LYS HE2 H N N 332 LYS HE3 H N N 333 LYS HZ1 H N N 334 LYS HZ2 H N N 335 LYS HZ3 H N N 336 LYS HXT H N N 337 PHE N N N N 338 PHE CA C N S 339 PHE C C N N 340 PHE O O N N 341 PHE CB C N N 342 PHE CG C Y N 343 PHE CD1 C Y N 344 PHE CD2 C Y N 345 PHE CE1 C Y N 346 PHE CE2 C Y N 347 PHE CZ C Y N 348 PHE OXT O N N 349 PHE H H N N 350 PHE H2 H N N 351 PHE HA H N N 352 PHE HB2 H N N 353 PHE HB3 H N N 354 PHE HD1 H N N 355 PHE HD2 H N N 356 PHE HE1 H N N 357 PHE HE2 H N N 358 PHE HZ H N N 359 PHE HXT H N N 360 PRO N N N N 361 PRO CA C N S 362 PRO C C N N 363 PRO O O N N 364 PRO CB C N N 365 PRO CG C N N 366 PRO CD C N N 367 PRO OXT O N N 368 PRO H H N N 369 PRO HA H N N 370 PRO HB2 H N N 371 PRO HB3 H N N 372 PRO HG2 H N N 373 PRO HG3 H N N 374 PRO HD2 H N N 375 PRO HD3 H N N 376 PRO HXT H N N 377 SER N N N N 378 SER CA C N S 379 SER C C N N 380 SER O O N N 381 SER CB C N N 382 SER OG O N N 383 SER OXT O N N 384 SER H H N N 385 SER H2 H N N 386 SER HA H N N 387 SER HB2 H N N 388 SER HB3 H N N 389 SER HG H N N 390 SER HXT H N N 391 THR N N N N 392 THR CA C N S 393 THR C C N N 394 THR O O N N 395 THR CB C N R 396 THR OG1 O N N 397 THR CG2 C N N 398 THR OXT O N N 399 THR H H N N 400 THR H2 H N N 401 THR HA H N N 402 THR HB H N N 403 THR HG1 H N N 404 THR HG21 H N N 405 THR HG22 H N N 406 THR HG23 H N N 407 THR HXT H N N 408 TRP N N N N 409 TRP CA C N S 410 TRP C C N N 411 TRP O O N N 412 TRP CB C N N 413 TRP CG C Y N 414 TRP CD1 C Y N 415 TRP CD2 C Y N 416 TRP NE1 N Y N 417 TRP CE2 C Y N 418 TRP CE3 C Y N 419 TRP CZ2 C Y N 420 TRP CZ3 C Y N 421 TRP CH2 C Y N 422 TRP OXT O N N 423 TRP H H N N 424 TRP H2 H N N 425 TRP HA H N N 426 TRP HB2 H N N 427 TRP HB3 H N N 428 TRP HD1 H N N 429 TRP HE1 H N N 430 TRP HE3 H N N 431 TRP HZ2 H N N 432 TRP HZ3 H N N 433 TRP HH2 H N N 434 TRP HXT H N N 435 VAL N N N N 436 VAL CA C N S 437 VAL C C N N 438 VAL O O N N 439 VAL CB C N N 440 VAL CG1 C N N 441 VAL CG2 C N N 442 VAL OXT O N N 443 VAL H H N N 444 VAL H2 H N N 445 VAL HA H N N 446 VAL HB H N N 447 VAL HG11 H N N 448 VAL HG12 H N N 449 VAL HG13 H N N 450 VAL HG21 H N N 451 VAL HG22 H N N 452 VAL HG23 H N N 453 VAL HXT H N N 454 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 PHE N CA sing N N 333 PHE N H sing N N 334 PHE N H2 sing N N 335 PHE CA C sing N N 336 PHE CA CB sing N N 337 PHE CA HA sing N N 338 PHE C O doub N N 339 PHE C OXT sing N N 340 PHE CB CG sing N N 341 PHE CB HB2 sing N N 342 PHE CB HB3 sing N N 343 PHE CG CD1 doub Y N 344 PHE CG CD2 sing Y N 345 PHE CD1 CE1 sing Y N 346 PHE CD1 HD1 sing N N 347 PHE CD2 CE2 doub Y N 348 PHE CD2 HD2 sing N N 349 PHE CE1 CZ doub Y N 350 PHE CE1 HE1 sing N N 351 PHE CE2 CZ sing Y N 352 PHE CE2 HE2 sing N N 353 PHE CZ HZ sing N N 354 PHE OXT HXT sing N N 355 PRO N CA sing N N 356 PRO N CD sing N N 357 PRO N H sing N N 358 PRO CA C sing N N 359 PRO CA CB sing N N 360 PRO CA HA sing N N 361 PRO C O doub N N 362 PRO C OXT sing N N 363 PRO CB CG sing N N 364 PRO CB HB2 sing N N 365 PRO CB HB3 sing N N 366 PRO CG CD sing N N 367 PRO CG HG2 sing N N 368 PRO CG HG3 sing N N 369 PRO CD HD2 sing N N 370 PRO CD HD3 sing N N 371 PRO OXT HXT sing N N 372 SER N CA sing N N 373 SER N H sing N N 374 SER N H2 sing N N 375 SER CA C sing N N 376 SER CA CB sing N N 377 SER CA HA sing N N 378 SER C O doub N N 379 SER C OXT sing N N 380 SER CB OG sing N N 381 SER CB HB2 sing N N 382 SER CB HB3 sing N N 383 SER OG HG sing N N 384 SER OXT HXT sing N N 385 THR N CA sing N N 386 THR N H sing N N 387 THR N H2 sing N N 388 THR CA C sing N N 389 THR CA CB sing N N 390 THR CA HA sing N N 391 THR C O doub N N 392 THR C OXT sing N N 393 THR CB OG1 sing N N 394 THR CB CG2 sing N N 395 THR CB HB sing N N 396 THR OG1 HG1 sing N N 397 THR CG2 HG21 sing N N 398 THR CG2 HG22 sing N N 399 THR CG2 HG23 sing N N 400 THR OXT HXT sing N N 401 TRP N CA sing N N 402 TRP N H sing N N 403 TRP N H2 sing N N 404 TRP CA C sing N N 405 TRP CA CB sing N N 406 TRP CA HA sing N N 407 TRP C O doub N N 408 TRP C OXT sing N N 409 TRP CB CG sing N N 410 TRP CB HB2 sing N N 411 TRP CB HB3 sing N N 412 TRP CG CD1 doub Y N 413 TRP CG CD2 sing Y N 414 TRP CD1 NE1 sing Y N 415 TRP CD1 HD1 sing N N 416 TRP CD2 CE2 doub Y N 417 TRP CD2 CE3 sing Y N 418 TRP NE1 CE2 sing Y N 419 TRP NE1 HE1 sing N N 420 TRP CE2 CZ2 sing Y N 421 TRP CE3 CZ3 doub Y N 422 TRP CE3 HE3 sing N N 423 TRP CZ2 CH2 doub Y N 424 TRP CZ2 HZ2 sing N N 425 TRP CZ3 CH2 sing Y N 426 TRP CZ3 HZ3 sing N N 427 TRP CH2 HH2 sing N N 428 TRP OXT HXT sing N N 429 VAL N CA sing N N 430 VAL N H sing N N 431 VAL N H2 sing N N 432 VAL CA C sing N N 433 VAL CA CB sing N N 434 VAL CA HA sing N N 435 VAL C O doub N N 436 VAL C OXT sing N N 437 VAL CB CG1 sing N N 438 VAL CB CG2 sing N N 439 VAL CB HB sing N N 440 VAL CG1 HG11 sing N N 441 VAL CG1 HG12 sing N N 442 VAL CG1 HG13 sing N N 443 VAL CG2 HG21 sing N N 444 VAL CG2 HG22 sing N N 445 VAL CG2 HG23 sing N N 446 VAL OXT HXT sing N N 447 # _ndb_struct_conf_na.entry_id 1RPE _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 2 1_555 B DT 20 1_555 0.281 -0.067 0.466 11.911 -6.917 -3.967 1 B_DA2:DT40_A B 2 ? A 40 ? 20 1 1 A DT 3 1_555 B DA 19 1_555 -0.533 -0.740 -0.083 -1.325 -5.913 -4.938 2 B_DT3:DA39_A B 3 ? A 39 ? 20 1 1 A DA 4 1_555 B DT 18 1_555 0.595 -0.040 0.372 4.536 -9.540 6.986 3 B_DA4:DT38_A B 4 ? A 38 ? 20 1 1 A DC 5 1_555 B DG 17 1_555 0.151 -0.612 -0.363 2.627 -18.218 -9.427 4 B_DC5:DG37_A B 5 ? A 37 ? 19 1 1 A DA 6 1_555 B DT 16 1_555 0.037 -0.491 -0.029 3.155 -6.632 0.490 5 B_DA6:DT36_A B 6 ? A 36 ? 20 1 1 A DA 7 1_555 B DT 15 1_555 -0.696 -0.168 -0.105 -5.814 -8.585 10.198 6 B_DA7:DT35_A B 7 ? A 35 ? 20 1 1 A DT 8 1_555 B DA 14 1_555 -0.776 -0.683 -0.060 5.795 -19.918 -2.541 7 B_DT8:DA34_A B 8 ? A 34 ? 20 1 1 A DG 9 1_555 B DC 13 1_555 0.197 -0.378 0.089 -2.913 -15.073 -5.744 8 B_DG9:DC33_A B 9 ? A 33 ? 19 1 1 A DT 10 1_555 B DA 12 1_555 -0.497 -0.078 0.222 5.326 -2.988 -3.073 9 B_DT10:DA32_A B 10 ? A 32 ? 20 1 1 A DA 11 1_555 B DT 11 1_555 0.082 -0.225 -0.119 -3.788 -4.800 -2.567 10 B_DA11:DT31_A B 11 ? A 31 ? 20 1 1 A DT 12 1_555 B DA 10 1_555 -0.331 -0.240 -0.844 20.115 -11.327 -2.976 11 B_DT12:DA30_A B 12 ? A 30 ? 20 1 1 A DC 13 1_555 B DG 9 1_555 -1.505 -0.124 -0.064 0.919 -16.346 1.729 12 B_DC13:DG29_A B 13 ? A 29 ? 19 1 1 A DT 14 1_555 B DA 8 1_555 0.300 -0.122 0.025 -3.751 -10.837 6.547 13 B_DT14:DA28_A B 14 ? A 28 ? 20 1 1 A DT 15 1_555 B DA 7 1_555 -0.220 -0.246 -0.665 10.804 -4.877 0.821 14 B_DT15:DA27_A B 15 ? A 27 ? 20 1 1 A DG 16 1_555 B DC 6 1_555 0.136 -0.358 -0.557 -5.344 -7.706 -1.243 15 B_DG16:DC26_A B 16 ? A 26 ? 19 1 1 A DT 17 1_555 B DA 5 1_555 -1.060 -0.356 0.013 3.706 -5.790 -2.805 16 B_DT17:DA25_A B 17 ? A 25 ? 20 1 1 A DT 18 1_555 B DA 4 1_555 0.160 -0.326 0.353 -4.409 -12.930 5.701 17 B_DT18:DA24_A B 18 ? A 24 ? 20 1 1 A DT 19 1_555 B DA 3 1_555 -0.153 0.102 -0.123 4.356 -11.908 3.000 18 B_DT19:DA23_A B 19 ? A 23 ? 20 1 1 A DG 20 1_555 B DC 2 1_555 0.981 -0.425 0.169 -6.349 -3.543 1.468 19 B_DG20:DC22_A B 20 ? A 22 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 2 1_555 B DT 20 1_555 A DT 3 1_555 B DA 19 1_555 0.174 -0.627 3.753 6.821 -3.912 30.006 -0.294 1.208 3.750 -7.397 -12.897 30.996 1 BB_DA2DT3:DA39DT40_AA B 2 ? A 40 ? B 3 ? A 39 ? 1 A DT 3 1_555 B DA 19 1_555 A DA 4 1_555 B DT 18 1_555 0.824 -0.313 3.143 -1.495 -6.428 39.623 0.250 -1.365 3.122 -9.403 2.187 40.147 2 BB_DT3DA4:DT38DA39_AA B 3 ? A 39 ? B 4 ? A 38 ? 1 A DA 4 1_555 B DT 18 1_555 A DC 5 1_555 B DG 17 1_555 -1.350 -0.855 3.244 3.508 5.031 32.328 -2.327 2.954 2.923 8.935 -6.231 32.889 3 BB_DA4DC5:DG37DT38_AA B 4 ? A 38 ? B 5 ? A 37 ? 1 A DC 5 1_555 B DG 17 1_555 A DA 6 1_555 B DT 16 1_555 0.176 -0.351 3.480 -2.956 6.016 30.685 -1.838 -0.909 3.322 11.201 5.504 31.392 4 BB_DC5DA6:DT36DG37_AA B 5 ? A 37 ? B 6 ? A 36 ? 1 A DA 6 1_555 B DT 16 1_555 A DA 7 1_555 B DT 15 1_555 0.265 0.147 3.521 0.839 5.873 30.234 -0.964 -0.321 3.492 11.124 -1.590 30.798 5 BB_DA6DA7:DT35DT36_AA B 6 ? A 36 ? B 7 ? A 35 ? 1 A DA 7 1_555 B DT 15 1_555 A DT 8 1_555 B DA 14 1_555 -0.558 0.044 3.090 -0.209 0.609 34.706 -0.014 0.906 3.094 1.022 0.350 34.712 6 BB_DA7DT8:DA34DT35_AA B 7 ? A 35 ? B 8 ? A 34 ? 1 A DT 8 1_555 B DA 14 1_555 A DG 9 1_555 B DC 13 1_555 -0.036 -0.235 3.492 -3.913 1.853 44.624 -0.487 -0.332 3.471 2.433 5.139 44.823 7 BB_DT8DG9:DC33DA34_AA B 8 ? A 34 ? B 9 ? A 33 ? 1 A DG 9 1_555 B DC 13 1_555 A DT 10 1_555 B DA 12 1_555 -0.087 -0.761 3.163 -1.757 -8.988 28.484 0.397 -0.197 3.246 -17.697 3.459 29.891 8 BB_DG9DT10:DA32DC33_AA B 9 ? A 33 ? B 10 ? A 32 ? 1 A DT 10 1_555 B DA 12 1_555 A DA 11 1_555 B DT 11 1_555 0.112 0.303 3.488 7.307 -3.956 45.747 0.740 0.516 3.430 -5.040 -9.308 46.455 9 BB_DT10DA11:DT31DA32_AA B 10 ? A 32 ? B 11 ? A 31 ? 1 A DA 11 1_555 B DT 11 1_555 A DT 12 1_555 B DA 10 1_555 0.614 -0.324 2.615 3.571 -2.162 30.471 -0.267 -0.588 2.684 -4.089 -6.754 30.749 10 BB_DA11DT12:DA30DT31_AA B 11 ? A 31 ? B 12 ? A 30 ? 1 A DT 12 1_555 B DA 10 1_555 A DC 13 1_555 B DG 9 1_555 0.639 -0.950 3.716 -1.900 7.855 32.293 -3.101 -1.464 3.357 13.854 3.351 33.262 11 BB_DT12DC13:DG29DA30_AA B 12 ? A 30 ? B 13 ? A 29 ? 1 A DC 13 1_555 B DG 9 1_555 A DT 14 1_555 B DA 8 1_555 0.143 0.363 3.516 -1.088 1.853 44.934 0.295 -0.293 3.523 2.422 1.422 44.983 12 BB_DC13DT14:DA28DG29_AA B 13 ? A 29 ? B 14 ? A 28 ? 1 A DT 14 1_555 B DA 8 1_555 A DT 15 1_555 B DA 7 1_555 0.325 0.708 2.878 4.599 3.664 32.745 0.686 0.122 2.955 6.435 -8.076 33.254 13 BB_DT14DT15:DA27DA28_AA B 14 ? A 28 ? B 15 ? A 27 ? 1 A DT 15 1_555 B DA 7 1_555 A DG 16 1_555 B DC 6 1_555 -0.124 -0.192 3.954 -0.049 6.745 32.405 -1.708 0.208 3.838 11.926 0.086 33.081 14 BB_DT15DG16:DC26DA27_AA B 15 ? A 27 ? B 16 ? A 26 ? 1 A DG 16 1_555 B DC 6 1_555 A DT 17 1_555 B DA 5 1_555 1.064 -0.852 3.046 -1.065 -1.766 26.394 -1.423 -2.586 3.051 -3.859 2.328 26.473 15 BB_DG16DT17:DA25DC26_AA B 16 ? A 26 ? B 17 ? A 25 ? 1 A DT 17 1_555 B DA 5 1_555 A DT 18 1_555 B DA 4 1_555 0.770 -1.079 3.723 1.023 -1.584 40.703 -1.349 -0.977 3.778 -2.276 -1.469 40.745 16 BB_DT17DT18:DA24DA25_AA B 17 ? A 25 ? B 18 ? A 24 ? 1 A DT 18 1_555 B DA 4 1_555 A DT 19 1_555 B DA 3 1_555 -0.026 0.180 2.841 1.155 3.598 34.290 -0.183 0.200 2.843 6.079 -1.952 34.491 17 BB_DT18DT19:DA23DA24_AA B 18 ? A 24 ? B 19 ? A 23 ? 1 A DT 19 1_555 B DA 3 1_555 A DG 20 1_555 B DC 2 1_555 -0.374 -0.241 3.715 -8.714 5.454 44.594 -0.855 -0.389 3.670 7.076 11.305 45.705 18 BB_DT19DG20:DC22DA23_AA B 19 ? A 23 ? B 20 ? A 22 ? # _atom_sites.entry_id 1RPE _atom_sites.fract_transf_matrix[1][1] 0.006698 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015555 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.036114 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_