HEADER COMPLEX (SMALL GTPASE/NUCLEAR PROTEIN) 15-JAN-99 1RRP TITLE STRUCTURE OF THE RAN-GPPNHP-RANBD1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP358; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: GST-FUSION; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: GST-FUSION KEYWDS COMPLEX (SMALL GTPASE-NUCLEAR PROTEIN), SMALL GTPASE, NUCLEAR KEYWDS 2 TRANSPORT, COMPLEX (SMALL GTPASE-NUCLEAR PROTEIN) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.R.VETTER,C.NOWAK,T.NISHIMOTO,J.KUHLMANN,A.WITTINGHOFER REVDAT 4 03-APR-24 1RRP 1 REMARK REVDAT 3 14-FEB-24 1RRP 1 REMARK LINK REVDAT 2 24-FEB-09 1RRP 1 VERSN REVDAT 1 18-MAY-99 1RRP 0 JRNL AUTH I.R.VETTER,C.NOWAK,T.NISHIMOTO,J.KUHLMANN,A.WITTINGHOFER JRNL TITL STRUCTURE OF A RAN-BINDING DOMAIN COMPLEXED WITH RAN BOUND JRNL TITL 2 TO A GTP ANALOGUE: IMPLICATIONS FOR NUCLEAR TRANSPORT. JRNL REF NATURE V. 398 39 1999 JRNL REFN ISSN 0028-0836 JRNL PMID 10078529 JRNL DOI 10.1038/17969 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.R.BISCHOFF,D.GORLICH REMARK 1 TITL RANBP1 IS CRUCIAL FOR THE RELEASE OF RANGTP FROM IMPORTIN REMARK 1 TITL 2 BETA-RELATED NUCLEAR TRANSPORT FACTORS REMARK 1 REF FEBS LETT. V. 419 249 1997 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.KUHLMANN,I.MACARA,A.WITTINGHOFER REMARK 1 TITL DYNAMIC AND EQUILIBRIUM STUDIES ON THE INTERACTION OF RAN REMARK 1 TITL 2 WITH ITS EFFECTOR, RANBP1 REMARK 1 REF BIOCHEMISTRY V. 36 12027 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH E.HARTMANN,D.GORLICH REMARK 1 TITL A RAN-BINDING MOTIF FOUND IN NUCLEAR PORE PROTEINS REMARK 1 REF TRENDS CELL BIOL. V. 5 192 1995 REMARK 1 REFN ISSN 0962-8924 REMARK 1 REFERENCE 4 REMARK 1 AUTH N.YOKOYAMA,N.HAYASHI,T.SEKI,N.PANTE,T.OHBA,K.NISHII,K.KUMA, REMARK 1 AUTH 2 T.HAYASHIDA,T.MIYATA,U.AEBI,M.FUKUI,T.NISHIMOTO REMARK 1 TITL A GIANT NUCLEOPORE PROTEIN THAT BINDS RAN/TC4 REMARK 1 REF NATURE V. 376 184 1995 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 5 REMARK 1 AUTH S.A.RICHARDS,K.M.LOUNSBURY,I.G.MACARA REMARK 1 TITL THE C TERMINUS OF THE NUCLEAR RAN/TC4 GTPASE STABILIZES THE REMARK 1 TITL 2 GDP-BOUND STATE AND MEDIATES INTERACTIONS WITH RCC1, REMARK 1 TITL 3 RAN-GAP, AND HTF9A/RANBP1 REMARK 1 REF J.BIOL.CHEM. V. 270 14405 1995 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 6 REMARK 1 AUTH F.R.BISCHOFF,H.KREBBER,E.SMIRNOVA,W.DONG,H.PONSTINGL REMARK 1 TITL CO-ACTIVATION OF RANGTPASE AND INHIBITION OF GTP REMARK 1 TITL 2 DISSOCIATION BY RAN-GTP BINDING PROTEIN RANBP1 REMARK 1 REF EMBO J. V. 14 705 1995 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.4 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.0 REMARK 3 NUMBER OF REFLECTIONS : 17709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1676 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5300 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM SIGMAA (A) : 0.53 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.64 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.81 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.980 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.24 REMARK 3 BSOL : 38.40 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : GNP.PAR REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RRP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : APR-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.25 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.84 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20286 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 0.4 REMARK 200 STARTING MODEL: RAN-GDP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.25 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.66950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.73150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.66950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 69.73150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 55.65358 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 63.92090 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 55.65358 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 63.92090 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL C 188 REMARK 465 MET C 189 REMARK 465 ASP C 190 REMARK 465 PRO C 191 REMARK 465 ALA C 192 REMARK 465 LEU C 193 REMARK 465 ALA C 194 REMARK 465 ALA C 195 REMARK 465 GLN C 196 REMARK 465 TYR C 197 REMARK 465 GLU C 198 REMARK 465 HIS C 199 REMARK 465 ASP C 200 REMARK 465 LEU C 201 REMARK 465 GLU C 202 REMARK 465 VAL C 203 REMARK 465 ALA C 204 REMARK 465 GLN C 205 REMARK 465 THR C 206 REMARK 465 THR C 207 REMARK 465 ALA C 208 REMARK 465 LEU C 209 REMARK 465 PRO C 210 REMARK 465 ASP C 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 35 N GLU B 37 2.14 REMARK 500 O GLU D 35 N GLU D 37 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 41 135.33 -39.35 REMARK 500 VAL A 45 141.40 49.41 REMARK 500 ASP A 65 93.54 -68.79 REMARK 500 LYS A 71 -7.99 -51.68 REMARK 500 ARG A 76 59.62 -69.79 REMARK 500 ASP A 77 -28.94 -140.84 REMARK 500 VAL A 92 -29.03 67.77 REMARK 500 ARG A 95 -36.45 -30.73 REMARK 500 VAL A 109 7.52 -63.14 REMARK 500 GLU A 113 178.39 -50.65 REMARK 500 ASN A 114 -125.97 33.64 REMARK 500 ILE A 115 130.84 68.77 REMARK 500 VAL A 124 7.83 -57.04 REMARK 500 ASP A 128 54.69 -64.50 REMARK 500 LYS A 132 156.26 -48.80 REMARK 500 VAL A 137 -35.17 -147.48 REMARK 500 SER A 150 75.69 -169.39 REMARK 500 ALA A 151 -8.98 -46.77 REMARK 500 ASN A 154 -6.61 61.16 REMARK 500 TYR A 155 115.46 -39.38 REMARK 500 ASN A 156 3.73 55.94 REMARK 500 PHE A 157 -2.72 -56.64 REMARK 500 PRO A 172 -17.04 -48.95 REMARK 500 ALA A 178 -147.93 39.98 REMARK 500 LEU A 182 154.17 -37.35 REMARK 500 VAL A 188 -169.49 -103.96 REMARK 500 MET A 189 120.44 72.59 REMARK 500 PRO A 191 -128.63 6.59 REMARK 500 LEU A 193 -83.77 -28.62 REMARK 500 ALA A 204 -75.12 -72.31 REMARK 500 GLN A 205 -7.61 -47.35 REMARK 500 ALA A 208 145.82 -36.21 REMARK 500 LYS B 27 -172.66 -57.03 REMARK 500 VAL B 30 93.92 -28.52 REMARK 500 LYS B 31 -105.45 -60.97 REMARK 500 THR B 32 -11.64 127.68 REMARK 500 GLU B 34 -104.52 -71.02 REMARK 500 GLU B 35 -150.47 12.46 REMARK 500 ASP B 36 16.33 32.61 REMARK 500 GLU B 39 87.93 -63.47 REMARK 500 PHE B 41 147.81 179.01 REMARK 500 CYS B 42 101.93 -166.29 REMARK 500 VAL B 52 -46.30 66.75 REMARK 500 SER B 54 -96.84 -128.58 REMARK 500 LYS B 55 -1.47 175.72 REMARK 500 THR B 72 -86.30 -86.81 REMARK 500 GLN B 84 -64.96 68.22 REMARK 500 LEU B 86 91.27 59.15 REMARK 500 CYS B 89 19.80 -148.94 REMARK 500 ALA B 90 137.08 -175.40 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 251 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 24 OG1 REMARK 620 2 THR A 42 OG1 58.0 REMARK 620 3 GNP A 250 O2B 65.3 97.6 REMARK 620 4 GNP A 250 O2G 77.4 55.7 57.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 251 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 24 OG1 REMARK 620 2 THR C 42 OG1 57.7 REMARK 620 3 GNP C 250 O2G 78.1 56.9 REMARK 620 4 GNP C 250 O2B 65.6 98.3 58.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP C 250 DBREF 1RRP A 8 211 UNP P62826 RAN_HUMAN 8 211 DBREF 1RRP B 17 150 UNP P49792 RBP2_HUMAN 1171 1304 DBREF 1RRP C 8 211 UNP P62826 RAN_HUMAN 8 211 DBREF 1RRP D 17 150 UNP P49792 RBP2_HUMAN 1171 1304 SEQADV 1RRP ARG A 129 UNP P62826 SER 129 SEE REMARK 999 SEQADV 1RRP ARG C 129 UNP P62826 SER 129 SEE REMARK 999 SEQRES 1 A 204 GLN VAL GLN PHE LYS LEU VAL LEU VAL GLY ASP GLY GLY SEQRES 2 A 204 THR GLY LYS THR THR PHE VAL LYS ARG HIS LEU THR GLY SEQRES 3 A 204 GLU PHE GLU LYS LYS TYR VAL ALA THR LEU GLY VAL GLU SEQRES 4 A 204 VAL HIS PRO LEU VAL PHE HIS THR ASN ARG GLY PRO ILE SEQRES 5 A 204 LYS PHE ASN VAL TRP ASP THR ALA GLY GLN GLU LYS PHE SEQRES 6 A 204 GLY GLY LEU ARG ASP GLY TYR TYR ILE GLN ALA GLN CYS SEQRES 7 A 204 ALA ILE ILE MET PHE ASP VAL THR SER ARG VAL THR TYR SEQRES 8 A 204 LYS ASN VAL PRO ASN TRP HIS ARG ASP LEU VAL ARG VAL SEQRES 9 A 204 CYS GLU ASN ILE PRO ILE VAL LEU CYS GLY ASN LYS VAL SEQRES 10 A 204 ASP ILE LYS ASP ARG LYS VAL LYS ALA LYS SER ILE VAL SEQRES 11 A 204 PHE HIS ARG LYS LYS ASN LEU GLN TYR TYR ASP ILE SER SEQRES 12 A 204 ALA LYS SER ASN TYR ASN PHE GLU LYS PRO PHE LEU TRP SEQRES 13 A 204 LEU ALA ARG LYS LEU ILE GLY ASP PRO ASN LEU GLU PHE SEQRES 14 A 204 VAL ALA MET PRO ALA LEU ALA PRO PRO GLU VAL VAL MET SEQRES 15 A 204 ASP PRO ALA LEU ALA ALA GLN TYR GLU HIS ASP LEU GLU SEQRES 16 A 204 VAL ALA GLN THR THR ALA LEU PRO ASP SEQRES 1 B 134 HIS PHE GLU PRO VAL VAL PRO LEU PRO ASP LYS ILE GLU SEQRES 2 B 134 VAL LYS THR GLY GLU GLU ASP GLU GLU GLU PHE PHE CYS SEQRES 3 B 134 ASN ARG ALA LYS LEU PHE ARG PHE ASP VAL GLU SER LYS SEQRES 4 B 134 GLU TRP LYS GLU ARG GLY ILE GLY ASN VAL LYS ILE LEU SEQRES 5 B 134 ARG HIS LYS THR SER GLY LYS ILE ARG LEU LEU MET ARG SEQRES 6 B 134 ARG GLU GLN VAL LEU LYS ILE CYS ALA ASN HIS TYR ILE SEQRES 7 B 134 SER PRO ASP MET LYS LEU THR PRO ASN ALA GLY SER ASP SEQRES 8 B 134 ARG SER PHE VAL TRP HIS ALA LEU ASP TYR ALA ASP GLU SEQRES 9 B 134 LEU PRO LYS PRO GLU GLN LEU ALA ILE ARG PHE LYS THR SEQRES 10 B 134 PRO GLU GLU ALA ALA LEU PHE LYS CYS LYS PHE GLU GLU SEQRES 11 B 134 ALA GLN SER ILE SEQRES 1 C 204 GLN VAL GLN PHE LYS LEU VAL LEU VAL GLY ASP GLY GLY SEQRES 2 C 204 THR GLY LYS THR THR PHE VAL LYS ARG HIS LEU THR GLY SEQRES 3 C 204 GLU PHE GLU LYS LYS TYR VAL ALA THR LEU GLY VAL GLU SEQRES 4 C 204 VAL HIS PRO LEU VAL PHE HIS THR ASN ARG GLY PRO ILE SEQRES 5 C 204 LYS PHE ASN VAL TRP ASP THR ALA GLY GLN GLU LYS PHE SEQRES 6 C 204 GLY GLY LEU ARG ASP GLY TYR TYR ILE GLN ALA GLN CYS SEQRES 7 C 204 ALA ILE ILE MET PHE ASP VAL THR SER ARG VAL THR TYR SEQRES 8 C 204 LYS ASN VAL PRO ASN TRP HIS ARG ASP LEU VAL ARG VAL SEQRES 9 C 204 CYS GLU ASN ILE PRO ILE VAL LEU CYS GLY ASN LYS VAL SEQRES 10 C 204 ASP ILE LYS ASP ARG LYS VAL LYS ALA LYS SER ILE VAL SEQRES 11 C 204 PHE HIS ARG LYS LYS ASN LEU GLN TYR TYR ASP ILE SER SEQRES 12 C 204 ALA LYS SER ASN TYR ASN PHE GLU LYS PRO PHE LEU TRP SEQRES 13 C 204 LEU ALA ARG LYS LEU ILE GLY ASP PRO ASN LEU GLU PHE SEQRES 14 C 204 VAL ALA MET PRO ALA LEU ALA PRO PRO GLU VAL VAL MET SEQRES 15 C 204 ASP PRO ALA LEU ALA ALA GLN TYR GLU HIS ASP LEU GLU SEQRES 16 C 204 VAL ALA GLN THR THR ALA LEU PRO ASP SEQRES 1 D 134 HIS PHE GLU PRO VAL VAL PRO LEU PRO ASP LYS ILE GLU SEQRES 2 D 134 VAL LYS THR GLY GLU GLU ASP GLU GLU GLU PHE PHE CYS SEQRES 3 D 134 ASN ARG ALA LYS LEU PHE ARG PHE ASP VAL GLU SER LYS SEQRES 4 D 134 GLU TRP LYS GLU ARG GLY ILE GLY ASN VAL LYS ILE LEU SEQRES 5 D 134 ARG HIS LYS THR SER GLY LYS ILE ARG LEU LEU MET ARG SEQRES 6 D 134 ARG GLU GLN VAL LEU LYS ILE CYS ALA ASN HIS TYR ILE SEQRES 7 D 134 SER PRO ASP MET LYS LEU THR PRO ASN ALA GLY SER ASP SEQRES 8 D 134 ARG SER PHE VAL TRP HIS ALA LEU ASP TYR ALA ASP GLU SEQRES 9 D 134 LEU PRO LYS PRO GLU GLN LEU ALA ILE ARG PHE LYS THR SEQRES 10 D 134 PRO GLU GLU ALA ALA LEU PHE LYS CYS LYS PHE GLU GLU SEQRES 11 D 134 ALA GLN SER ILE HET MG A 251 1 HET GNP A 250 32 HET MG C 251 1 HET GNP C 250 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 5 MG 2(MG 2+) FORMUL 6 GNP 2(C10 H17 N6 O13 P3) FORMUL 9 HOH *36(H2 O) HELIX 1 1 LYS A 23 THR A 32 1 10 HELIX 2 2 GLU A 70 PHE A 72 5 3 HELIX 3 3 ARG A 95 VAL A 111 1 17 HELIX 4 4 ALA A 133 SER A 135 5 3 HELIX 5 5 PHE A 138 LYS A 141 1 4 HELIX 6 6 LYS A 159 ILE A 169 1 11 HELIX 7 7 PRO A 191 GLN A 205 1 15 HELIX 8 8 PRO B 134 GLU B 146 1 13 HELIX 9 9 LYS C 23 THR C 32 1 10 HELIX 10 10 GLU C 70 PHE C 72 5 3 HELIX 11 11 ARG C 95 VAL C 111 1 17 HELIX 12 12 ALA C 133 SER C 135 5 3 HELIX 13 13 PHE C 138 LYS C 141 1 4 HELIX 14 14 LYS C 159 ILE C 169 1 11 HELIX 15 15 PRO D 134 GLU D 146 1 13 SHEET 1 A 6 GLN A 145 ASP A 148 0 SHEET 2 A 6 PRO A 116 GLY A 121 1 N LEU A 119 O GLN A 145 SHEET 3 A 6 CYS A 85 PHE A 90 1 N ALA A 86 O PRO A 116 SHEET 4 A 6 GLN A 10 VAL A 16 1 N VAL A 14 O CYS A 85 SHEET 5 A 6 GLY A 57 ASP A 65 1 N LYS A 60 O PHE A 11 SHEET 6 A 6 GLU A 46 THR A 54 -1 N THR A 54 O GLY A 57 SHEET 1 B 3 GLU B 37 GLU B 39 0 SHEET 2 B 3 GLY B 63 HIS B 70 -1 N ARG B 69 O GLU B 38 SHEET 3 B 3 ARG B 77 ARG B 82 -1 N ARG B 81 O ASN B 64 SHEET 1 C 4 SER B 109 ASP B 116 0 SHEET 2 C 4 LYS B 123 ARG B 130 -1 N ILE B 129 O PHE B 110 SHEET 3 C 4 CYS B 42 PHE B 50 -1 N PHE B 48 O ALA B 128 SHEET 4 C 4 TRP B 57 LYS B 66 -1 N VAL B 65 O ASN B 43 SHEET 1 D 6 GLN C 145 ASP C 148 0 SHEET 2 D 6 PRO C 116 GLY C 121 1 N LEU C 119 O GLN C 145 SHEET 3 D 6 CYS C 85 PHE C 90 1 N ALA C 86 O PRO C 116 SHEET 4 D 6 GLN C 10 VAL C 16 1 N VAL C 14 O CYS C 85 SHEET 5 D 6 GLY C 57 ASP C 65 1 N LYS C 60 O PHE C 11 SHEET 6 D 6 GLU C 46 THR C 54 -1 N THR C 54 O GLY C 57 SHEET 1 E 3 GLU D 37 GLU D 39 0 SHEET 2 E 3 VAL D 65 HIS D 70 -1 N ARG D 69 O GLU D 38 SHEET 3 E 3 ARG D 77 MET D 80 -1 N LEU D 79 O LYS D 66 SHEET 1 F 4 SER D 109 ASP D 116 0 SHEET 2 F 4 LYS D 123 ARG D 130 -1 N ILE D 129 O PHE D 110 SHEET 3 F 4 CYS D 42 PHE D 50 -1 N PHE D 48 O ALA D 128 SHEET 4 F 4 TRP D 57 LYS D 66 -1 N VAL D 65 O ASN D 43 LINK OG1 THR A 24 MG MG A 251 1555 1555 2.70 LINK OG1 THR A 42 MG MG A 251 1555 1555 2.73 LINK O2B GNP A 250 MG MG A 251 1555 1555 2.63 LINK O2G GNP A 250 MG MG A 251 1555 1555 2.85 LINK OG1 THR C 24 MG MG C 251 1555 1555 2.68 LINK OG1 THR C 42 MG MG C 251 1555 1555 2.72 LINK O2G GNP C 250 MG MG C 251 1555 1555 2.83 LINK O2B GNP C 250 MG MG C 251 1555 1555 2.61 SITE 1 AC1 4 THR A 24 VAL A 40 THR A 42 GNP A 250 SITE 1 AC2 4 THR C 24 VAL C 40 THR C 42 GNP C 250 SITE 1 AC3 23 GLY A 19 GLY A 20 THR A 21 GLY A 22 SITE 2 AC3 23 LYS A 23 THR A 24 THR A 25 PHE A 35 SITE 3 AC3 23 GLU A 36 LYS A 37 LYS A 38 TYR A 39 SITE 4 AC3 23 ALA A 41 THR A 42 ALA A 67 GLY A 68 SITE 5 AC3 23 ASN A 122 LYS A 123 ASP A 125 SER A 150 SITE 6 AC3 23 ALA A 151 LYS A 152 MG A 251 SITE 1 AC4 23 GLY C 19 GLY C 20 THR C 21 GLY C 22 SITE 2 AC4 23 LYS C 23 THR C 24 THR C 25 PHE C 35 SITE 3 AC4 23 GLU C 36 LYS C 37 LYS C 38 TYR C 39 SITE 4 AC4 23 ALA C 41 THR C 42 ALA C 67 GLY C 68 SITE 5 AC4 23 ASN C 122 LYS C 123 ASP C 125 SER C 150 SITE 6 AC4 23 ALA C 151 LYS C 152 MG C 251 CRYST1 121.339 139.463 91.654 90.00 135.78 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008241 0.000000 0.008469 0.00000 SCALE2 0.000000 0.007170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015644 0.00000 MTRIX1 1 0.993600 -0.046000 0.103200 -4.69520 1 MTRIX2 1 -0.043000 -0.998600 -0.030700 -12.10150 1 MTRIX3 1 0.104400 0.026100 -0.994200 63.52460 1