HEADER HYDROLASE/DNA 08-DEC-03 1RRQ TITLE MUTY ADENINE GLYCOSYLASE IN COMPLEX WITH DNA CONTAINING AN A:OXOG PAIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*TP*GP*TP*CP*CP*AP*AP*GP*TP*CP*T)-3'; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MUTY; COMPND 11 CHAIN: A; COMPND 12 EC: 3.2.2.-; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 7 ORGANISM_TAXID: 1422; SOURCE 8 GENE: MUTY; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS DNA REPAIR, DNA GLYCOSYLASE, 8-OXOGUANINE, PROTEIN-DNA COMPLEX, KEYWDS 2 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.C.FROMME,A.BANERJEE,S.J.HUANG,G.L.VERDINE REVDAT 4 14-FEB-24 1RRQ 1 REMARK LINK REVDAT 3 31-MAR-09 1RRQ 1 ATOM CONECT REVDAT 2 24-FEB-09 1RRQ 1 VERSN REVDAT 1 17-FEB-04 1RRQ 0 JRNL AUTH J.C.FROMME,A.BANERJEE,S.J.HUANG,G.L.VERDINE JRNL TITL STRUCTURAL BASIS FOR REMOVAL OF ADENINE MISPAIRED WITH JRNL TITL 2 8-OXOGUANINE BY MUTY ADENINE DNA GLYCOSYLASE JRNL REF NATURE V. 427 652 2004 JRNL REFN ISSN 0028-0836 JRNL PMID 14961129 JRNL DOI 10.1038/NATURE02306 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 494750.330 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 21091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1025 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1556 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 85 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.035 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2578 REMARK 3 NUCLEIC ACID ATOMS : 428 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.49000 REMARK 3 B22 (A**2) : 2.51000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.940 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.030 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.510 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 9.920 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 12.110; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 52.20 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : FS4_OXOG.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : FS4_OXOG.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000020991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-03; 13-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : NSLS; ROTATING ANODE REMARK 200 BEAMLINE : X25; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1; 1.5418 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; RIGAKU RAXIS REMARK 200 IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21575 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.27900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, PEG 8000, CALCIUM ACETATE, 2 REMARK 280 -MERCAPTOETHANOL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.88150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.04400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.84950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.04400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.88150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.84950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT C 12 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 PHE A 8 REMARK 465 LYS A 230 REMARK 465 LYS A 231 REMARK 465 THR A 232 REMARK 465 ALA A 233 REMARK 465 GLU A 288 REMARK 465 GLN A 289 REMARK 465 TYR A 290 REMARK 465 GLY A 291 REMARK 465 GLY A 361 REMARK 465 VAL A 362 REMARK 465 ARG A 363 REMARK 465 PRO A 364 REMARK 465 PRO A 365 REMARK 465 PRO A 366 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG C 13 P OP1 OP2 REMARK 470 ALA A 10 CB REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 27 CG OD1 OD2 REMARK 470 ARG A 64 CD NE CZ NH1 NH2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 116 CB CG CD OE1 OE2 REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 GLU A 181 CB CG CD OE1 OE2 REMARK 470 ARG A 201 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 202 CB CG CD NE CZ NH1 NH2 REMARK 470 LEU A 207 CG CD1 CD2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 MET A 229 CG SD CE REMARK 470 LYS A 235 CE NZ REMARK 470 ASP A 247 CG OD1 OD2 REMARK 470 GLU A 248 CB CG CD OE1 OE2 REMARK 470 SER A 258 OG REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 ASP A 274 CB CG OD1 OD2 REMARK 470 ALA A 276 CB REMARK 470 ASP A 277 CB CG OD1 OD2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 GLN A 284 CG CD OE1 NE2 REMARK 470 LEU A 292 CB CG CD1 CD2 REMARK 470 GLN A 293 CB CG CD OE1 NE2 REMARK 470 VAL A 294 CB CG1 CG2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 THR A 297 OG1 CG2 REMARK 470 GLU A 298 CB CG CD OE1 OE2 REMARK 470 ILE A 300 CB CG1 CG2 CD1 REMARK 470 VAL A 301 CG1 CG2 REMARK 470 VAL A 316 CG1 CG2 REMARK 470 ARG A 320 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 322 CG1 CG2 REMARK 470 GLU A 328 CB CG CD OE1 OE2 REMARK 470 GLU A 329 CB CG CD OE1 OE2 REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 LYS A 340 CD CE NZ REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 SER A 360 O OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 103 -70.81 -57.24 REMARK 500 PRO A 139 64.27 -68.85 REMARK 500 LEU A 156 77.26 24.58 REMARK 500 ASN A 182 74.60 173.75 REMARK 500 LEU A 262 47.96 33.09 REMARK 500 ASP A 274 49.57 20.14 REMARK 500 VAL A 301 163.36 178.69 REMARK 500 PRO A 326 -174.89 -62.23 REMARK 500 GLU A 328 -144.12 -106.67 REMARK 500 GLU A 329 -147.55 46.50 REMARK 500 LYS A 340 1.26 -58.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 367 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 118 O REMARK 620 2 SER A 118 OG 61.7 REMARK 620 3 VAL A 123 O 81.7 100.9 REMARK 620 4 HOH A 457 O 70.8 132.4 74.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 198 SG REMARK 620 2 SF4 A 400 S1 111.5 REMARK 620 3 SF4 A 400 S3 120.7 109.3 REMARK 620 4 SF4 A 400 S4 109.3 97.6 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 205 SG REMARK 620 2 SF4 A 400 S1 107.5 REMARK 620 3 SF4 A 400 S2 115.0 104.3 REMARK 620 4 SF4 A 400 S4 121.7 102.4 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 208 SG REMARK 620 2 SF4 A 400 S2 126.7 REMARK 620 3 SF4 A 400 S3 110.3 102.8 REMARK 620 4 SF4 A 400 S4 110.6 100.4 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 214 SG REMARK 620 2 SF4 A 400 S1 112.8 REMARK 620 3 SF4 A 400 S2 115.5 101.6 REMARK 620 4 SF4 A 400 S3 115.2 106.5 103.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RRS RELATED DB: PDB REMARK 900 RELATED ID: 1RRT RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE PROTEIN HAS NOT YET REMARK 999 BEEN DEPOSITED IN ANY REFERENCE SEQUENCE REMARK 999 DATABASE. AUTHORS INFORMED THAT THE REMARK 999 FOLLOWING MUTATIONS ARE PRESENT IN THE REMARK 999 SEQUENCE: D144N, P164C, F347S, K357E. REMARK 999 RESIDUES -2 TO 0 ARE CLONING ARTIFACTS. DBREF 1RRQ A 1 366 UNP P83847 P83847_BACST 1 366 DBREF 1RRQ B 1 11 PDB 1RRQ 1RRQ 1 11 DBREF 1RRQ C 12 22 PDB 1RRQ 1RRQ 12 22 SEQRES 1 B 11 DA DA DG DA DC 8OG DT DG DG DA DC SEQRES 1 C 11 DT DG DT DC DC DA DA DG DT DC DT SEQRES 1 A 369 GLY SER HIS MET THR ARG GLU THR GLU ARG PHE PRO ALA SEQRES 2 A 369 ARG GLU PHE GLN ARG ASP LEU LEU ASP TRP PHE ALA ARG SEQRES 3 A 369 GLU ARG ARG ASP LEU PRO TRP ARG LYS ASP ARG ASP PRO SEQRES 4 A 369 TYR LYS VAL TRP VAL SER GLU VAL MET LEU GLN GLN THR SEQRES 5 A 369 ARG VAL GLU THR VAL ILE PRO TYR PHE GLU GLN PHE ILE SEQRES 6 A 369 ASP ARG PHE PRO THR LEU GLU ALA LEU ALA ASP ALA ASP SEQRES 7 A 369 GLU ASP GLU VAL LEU LYS ALA TRP GLU GLY LEU GLY TYR SEQRES 8 A 369 TYR SER ARG VAL ARG ASN LEU HIS ALA ALA VAL LYS GLU SEQRES 9 A 369 VAL LYS THR ARG TYR GLY GLY LYS VAL PRO ASP ASP PRO SEQRES 10 A 369 ASP GLU PHE SER ARG LEU LYS GLY VAL GLY PRO TYR THR SEQRES 11 A 369 VAL GLY ALA VAL LEU SER LEU ALA TYR GLY VAL PRO GLU SEQRES 12 A 369 PRO ALA VAL ASN GLY ASN VAL MET ARG VAL LEU SER ARG SEQRES 13 A 369 LEU PHE LEU VAL THR ASP ASP ILE ALA LYS CYS SER THR SEQRES 14 A 369 ARG LYS ARG PHE GLU GLN ILE VAL ARG GLU ILE MET ALA SEQRES 15 A 369 TYR GLU ASN PRO GLY ALA PHE ASN GLU ALA LEU ILE GLU SEQRES 16 A 369 LEU GLY ALA LEU VAL CYS THR PRO ARG ARG PRO SER CYS SEQRES 17 A 369 LEU LEU CYS PRO VAL GLN ALA TYR CYS GLN ALA PHE ALA SEQRES 18 A 369 GLU GLY VAL ALA GLU GLU LEU PRO VAL LYS MET LYS LYS SEQRES 19 A 369 THR ALA VAL LYS GLN VAL PRO LEU ALA VAL ALA VAL LEU SEQRES 20 A 369 ALA ASP ASP GLU GLY ARG VAL LEU ILE ARG LYS ARG ASP SEQRES 21 A 369 SER THR GLY LEU LEU ALA ASN LEU TRP GLU PHE PRO SER SEQRES 22 A 369 CYS GLU THR ASP GLY ALA ASP GLY LYS GLU LYS LEU GLU SEQRES 23 A 369 GLN MET VAL GLY GLU GLN TYR GLY LEU GLN VAL GLU LEU SEQRES 24 A 369 THR GLU PRO ILE VAL SER PHE GLU HIS ALA PHE SER HIS SEQRES 25 A 369 LEU VAL TRP GLN LEU THR VAL PHE PRO GLY ARG LEU VAL SEQRES 26 A 369 HIS GLY GLY PRO VAL GLU GLU PRO TYR ARG LEU ALA PRO SEQRES 27 A 369 GLU ASP GLU LEU LYS ALA TYR ALA PHE PRO VAL SER HIS SEQRES 28 A 369 GLN ARG VAL TRP ARG GLU TYR LYS GLU TRP ALA SER GLY SEQRES 29 A 369 VAL ARG PRO PRO PRO MODRES 1RRQ 8OG B 6 DG HET 8OG B 6 23 HET CA A 367 1 HET SF4 A 400 8 HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM SF4 IRON/SULFUR CLUSTER HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 1 8OG C10 H14 N5 O8 P FORMUL 4 CA CA 2+ FORMUL 5 SF4 FE4 S4 FORMUL 6 HOH *93(H2 O) HELIX 1 1 PRO A 9 ARG A 25 1 17 HELIX 2 2 LEU A 28 LYS A 32 5 5 HELIX 3 3 ASP A 35 GLN A 47 1 13 HELIX 4 4 ARG A 50 PHE A 65 1 16 HELIX 5 5 THR A 67 ALA A 74 1 8 HELIX 6 6 ASP A 75 GLU A 84 1 10 HELIX 7 7 TYR A 89 GLY A 107 1 19 HELIX 8 8 ASP A 113 ARG A 119 1 7 HELIX 9 9 GLY A 124 TYR A 136 1 13 HELIX 10 10 ASN A 144 PHE A 155 1 12 HELIX 11 11 SER A 165 MET A 178 1 14 HELIX 12 12 ASN A 182 VAL A 197 1 16 HELIX 13 13 SER A 204 CYS A 208 5 5 HELIX 14 14 VAL A 210 TYR A 213 5 4 HELIX 15 15 CYS A 214 GLU A 219 1 6 HELIX 16 16 GLY A 278 MET A 285 1 8 HELIX 17 17 ASP A 337 TYR A 342 5 6 HELIX 18 18 PRO A 345 SER A 360 1 16 SHEET 1 A 4 SER A 270 GLU A 272 0 SHEET 2 A 4 LYS A 235 ASP A 246 -1 N ALA A 240 O CYS A 271 SHEET 3 A 4 LEU A 310 VAL A 322 1 O LEU A 321 N ALA A 245 SHEET 4 A 4 GLN A 293 LEU A 296 -1 N GLU A 295 O ARG A 320 SHEET 1 B 4 SER A 270 GLU A 272 0 SHEET 2 B 4 LYS A 235 ASP A 246 -1 N ALA A 240 O CYS A 271 SHEET 3 B 4 LEU A 310 VAL A 322 1 O LEU A 321 N ALA A 245 SHEET 4 B 4 VAL A 301 ALA A 306 -1 N HIS A 305 O TRP A 312 SHEET 1 C 3 TRP A 266 GLU A 267 0 SHEET 2 C 3 ARG A 250 LYS A 255 -1 N ARG A 254 O GLU A 267 SHEET 3 C 3 TYR A 331 PRO A 335 -1 O ALA A 334 N VAL A 251 LINK O3' DC B 5 P 8OG B 6 1555 1555 1.58 LINK O3' 8OG B 6 P DT B 7 1555 1555 1.57 LINK O SER A 118 CA CA A 367 1555 1555 2.49 LINK OG SER A 118 CA CA A 367 1555 1555 2.95 LINK O VAL A 123 CA CA A 367 1555 1555 2.55 LINK SG CYS A 198 FE2 SF4 A 400 1555 1555 2.48 LINK SG CYS A 205 FE3 SF4 A 400 1555 1555 2.32 LINK SG CYS A 208 FE1 SF4 A 400 1555 1555 2.35 LINK SG CYS A 214 FE4 SF4 A 400 1555 1555 2.51 LINK CA CA A 367 O HOH A 457 1555 1555 2.72 CISPEP 1 LEU A 225 PRO A 226 0 -0.16 SITE 1 AC1 3 SER A 118 VAL A 123 HOH A 457 SITE 1 AC2 7 ARG A 153 LEU A 154 CYS A 198 CYS A 205 SITE 2 AC2 7 CYS A 208 CYS A 214 ALA A 222 CRYST1 37.763 85.699 142.088 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026481 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011669 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007038 0.00000