HEADER HYDROLASE 10-DEC-03 1RTQ TITLE THE 0.95 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE TITLE 2 AMINOPEPTIDASE FROM AEROMONAS PROTEOLYTICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIAL LEUCYL AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AMINOPEPTIDASE; COMPND 5 EC: 3.4.11.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 671; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIMETALLIC, ZINC, HIGH RESOLUTION, AMINOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.DESMARAIS,D.L.BIENVENUE,B.P.KRZYSZTOF,R.C.HOLZ,G.A.PETSKO, AUTHOR 2 D.RINGE REVDAT 3 24-FEB-09 1RTQ 1 VERSN REVDAT 2 06-JUN-06 1RTQ 1 JRNL REVDAT 1 10-FEB-04 1RTQ 0 JRNL AUTH W.DESMARAIS,D.L.BIENVENUE,K.P.BZYMEK,G.A.PETSKO, JRNL AUTH 2 D.RINGE,R.C.HOLZ JRNL TITL THE HIGH-RESOLUTION STRUCTURES OF THE NEUTRAL AND JRNL TITL 2 THE LOW PH CRYSTALS OF AMINOPEPTIDASE FROM JRNL TITL 3 AEROMONAS PROTEOLYTICA. JRNL REF J.BIOL.INORG.CHEM. V. 11 398 2006 JRNL REFN ISSN 0949-8257 JRNL PMID 16596389 JRNL DOI 10.1007/S00775-006-0093-X REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 0.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.135 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 9556 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 191127 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4300 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RTQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-DEC-03. REMARK 100 THE RCSB ID CODE IS RCSB021027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 191127 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, POTASSIUM THIOCYANATE, REMARK 280 SODIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.45633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.91267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.68450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.14083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.22817 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.45633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 60.91267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 76.14083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.68450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 15.22817 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1085 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1098 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1216 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1295 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 292 REMARK 465 THR A 293 REMARK 465 PRO A 294 REMARK 465 THR A 295 REMARK 465 PRO A 296 REMARK 465 GLY A 297 REMARK 465 ASN A 298 REMARK 465 GLN A 299 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 104 CA SER A 104 CB 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 89 CB - CG - OD1 ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP A 89 CB - CG - OD2 ANGL. DEV. = -9.9 DEGREES REMARK 500 SER A 104 N - CA - CB ANGL. DEV. = -9.4 DEGREES REMARK 500 SER A 104 CA - CB - OG ANGL. DEV. = -17.3 DEGREES REMARK 500 HIS A 105 N - CA - CB ANGL. DEV. = 14.5 DEGREES REMARK 500 HIS A 105 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 SER A 104 O - C - N ANGL. DEV. = -15.2 DEGREES REMARK 500 HIS A 105 C - N - CA ANGL. DEV. = -15.0 DEGREES REMARK 500 GLU A 108 OE1 - CD - OE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 GLU A 108 CG - CD - OE2 ANGL. DEV. = 12.2 DEGREES REMARK 500 GLN A 109 CB - CG - CD ANGL. DEV. = 26.1 DEGREES REMARK 500 ARG A 254 CD - NE - CZ ANGL. DEV. = 34.7 DEGREES REMARK 500 ARG A 254 NH1 - CZ - NH2 ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG A 254 NE - CZ - NH1 ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG A 254 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 GLY A 291 CA - C - O ANGL. DEV. = 17.8 DEGREES REMARK 500 GLY A 291 C - N - CA ANGL. DEV. = 14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 180 106.24 84.65 REMARK 500 SER A 265 -143.94 -94.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1319 DISTANCE = 5.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 117 OD2 REMARK 620 2 HIS A 256 NE2 92.1 REMARK 620 3 HOH A1095 O 101.9 157.6 REMARK 620 4 HOH A1189 O 105.4 80.8 78.7 REMARK 620 5 GLU A 152 OE2 95.7 100.5 95.5 158.8 REMARK 620 6 GLU A 152 OE1 151.5 87.1 88.6 102.5 56.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 117 OD1 REMARK 620 2 ASP A 179 OD1 91.5 REMARK 620 3 ASP A 179 OD2 148.3 57.2 REMARK 620 4 HOH A1095 O 103.5 141.2 99.5 REMARK 620 5 HIS A 97 NE2 98.4 100.2 92.7 112.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 703 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1096 O REMARK 620 2 HOH A1024 O 98.6 REMARK 620 3 HOH A1026 O 93.7 89.0 REMARK 620 4 TYR A 218 OH 79.9 175.7 87.1 REMARK 620 5 HOH A1028 O 81.7 103.0 167.6 80.8 REMARK 620 6 HOH A1025 O 170.9 83.4 95.2 98.7 89.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 704 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 51 OG REMARK 620 2 HOH A1046 O 89.2 REMARK 620 3 HOH A1048 O 94.9 86.4 REMARK 620 4 HOH A1142 O 85.1 170.6 86.7 REMARK 620 5 HOH A1086 O 90.1 88.7 172.9 98.7 REMARK 620 6 ASN A 74 OD1 166.4 103.6 90.5 82.7 85.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 705 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1073 O REMARK 620 2 HOH A1087 O 97.3 REMARK 620 3 THR A 268 OG1 167.2 90.2 REMARK 620 4 HOH A1090 O 91.9 170.7 81.0 REMARK 620 5 SER A 270 OG 87.7 89.0 82.1 92.8 REMARK 620 6 HOH A1133 O 84.4 94.6 105.4 84.8 171.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 1973 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 1974 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 701 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 702 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 703 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 704 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 705 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AMP RELATED DB: PDB REMARK 900 RELATED ID: 1CP6 RELATED DB: PDB REMARK 900 RELATED ID: 1FT7 RELATED DB: PDB REMARK 900 RELATED ID: 1LOK RELATED DB: PDB DBREF 1RTQ A 1 299 UNP Q01693 AMPX_VIBPR 107 405 SEQRES 1 A 299 MET PRO PRO ILE THR GLN GLN ALA THR VAL THR ALA TRP SEQRES 2 A 299 LEU PRO GLN VAL ASP ALA SER GLN ILE THR GLY THR ILE SEQRES 3 A 299 SER SER LEU GLU SER PHE THR ASN ARG PHE TYR THR THR SEQRES 4 A 299 THR SER GLY ALA GLN ALA SER ASP TRP ILE ALA SER GLU SEQRES 5 A 299 TRP GLN ALA LEU SER ALA SER LEU PRO ASN ALA SER VAL SEQRES 6 A 299 LYS GLN VAL SER HIS SER GLY TYR ASN GLN LYS SER VAL SEQRES 7 A 299 VAL MET THR ILE THR GLY SER GLU ALA PRO ASP GLU TRP SEQRES 8 A 299 ILE VAL ILE GLY GLY HIS LEU ASP SER THR ILE GLY SER SEQRES 9 A 299 HIS THR ASN GLU GLN SER VAL ALA PRO GLY ALA ASP ASP SEQRES 10 A 299 ASP ALA SER GLY ILE ALA ALA VAL THR GLU VAL ILE ARG SEQRES 11 A 299 VAL LEU SER GLU ASN ASN PHE GLN PRO LYS ARG SER ILE SEQRES 12 A 299 ALA PHE MET ALA TYR ALA ALA GLU GLU VAL GLY LEU ARG SEQRES 13 A 299 GLY SER GLN ASP LEU ALA ASN GLN TYR LYS SER GLU GLY SEQRES 14 A 299 LYS ASN VAL VAL SER ALA LEU GLN LEU ASP MET THR ASN SEQRES 15 A 299 TYR LYS GLY SER ALA GLN ASP VAL VAL PHE ILE THR ASP SEQRES 16 A 299 TYR THR ASP SER ASN PHE THR GLN TYR LEU THR GLN LEU SEQRES 17 A 299 MET ASP GLU TYR LEU PRO SER LEU THR TYR GLY PHE ASP SEQRES 18 A 299 THR CYS GLY TYR ALA CYS SER ASP HIS ALA SER TRP HIS SEQRES 19 A 299 ASN ALA GLY TYR PRO ALA ALA MET PRO PHE GLU SER LYS SEQRES 20 A 299 PHE ASN ASP TYR ASN PRO ARG ILE HIS THR THR GLN ASP SEQRES 21 A 299 THR LEU ALA ASN SER ASP PRO THR GLY SER HIS ALA LYS SEQRES 22 A 299 LYS PHE THR GLN LEU GLY LEU ALA TYR ALA ILE GLU MET SEQRES 23 A 299 GLY SER ALA THR GLY ASP THR PRO THR PRO GLY ASN GLN HET SCN A1973 3 HET SCN A1974 3 HET ZN A 701 1 HET ZN A 702 1 HET NA A 703 1 HET NA A 704 1 HET NA A 705 1 HETNAM SCN THIOCYANATE ION HETNAM ZN ZINC ION HETNAM NA SODIUM ION FORMUL 2 SCN 2(C N S 1-) FORMUL 4 ZN 2(ZN 2+) FORMUL 6 NA 3(NA 1+) FORMUL 9 HOH *324(H2 O) HELIX 1 1 GLN A 6 LEU A 14 1 9 HELIX 2 2 PRO A 15 VAL A 17 5 3 HELIX 3 3 ASP A 18 SER A 31 1 14 HELIX 4 4 THR A 39 ALA A 58 1 20 HELIX 5 5 ASP A 118 ASN A 135 1 18 HELIX 6 6 ALA A 150 GLY A 154 5 5 HELIX 7 7 LEU A 155 GLU A 168 1 14 HELIX 8 8 ASP A 198 LEU A 213 1 16 HELIX 9 9 ASP A 229 ALA A 236 1 8 HELIX 10 10 LYS A 247 TYR A 251 5 5 HELIX 11 11 THR A 261 SER A 265 5 5 HELIX 12 12 GLY A 269 ALA A 289 1 21 SHEET 1 A 6 ALA A 63 HIS A 70 0 SHEET 2 A 6 TYR A 73 ILE A 82 -1 O VAL A 79 N LYS A 66 SHEET 3 A 6 ARG A 141 TYR A 148 -1 O PHE A 145 N MET A 80 SHEET 4 A 6 ALA A 87 HIS A 97 1 N ILE A 92 O ALA A 144 SHEET 5 A 6 ASN A 171 GLN A 177 1 O ASN A 171 N TRP A 91 SHEET 6 A 6 ALA A 240 ALA A 241 1 O ALA A 241 N ALA A 175 SHEET 1 B 3 TYR A 218 ASP A 221 0 SHEET 2 B 3 VAL A 190 ILE A 193 1 N PHE A 192 O GLY A 219 SHEET 3 B 3 PRO A 243 PHE A 244 -1 O PHE A 244 N VAL A 191 SSBOND 1 CYS A 223 CYS A 227 1555 1555 2.07 LINK ZN ZN A 701 OD2 ASP A 117 1555 1555 2.04 LINK ZN ZN A 701 NE2 HIS A 256 1555 1555 2.03 LINK ZN ZN A 701 O HOH A1095 1555 1555 2.00 LINK ZN ZN A 701 O HOH A1189 1555 1555 2.29 LINK ZN ZN A 701 OE2 GLU A 152 1555 1555 2.13 LINK ZN ZN A 701 OE1 GLU A 152 1555 1555 2.48 LINK ZN ZN A 702 OD1 ASP A 117 1555 1555 2.00 LINK ZN ZN A 702 OD1 ASP A 179 1555 1555 2.12 LINK ZN ZN A 702 OD2 ASP A 179 1555 1555 2.32 LINK ZN ZN A 702 O HOH A1095 1555 1555 1.94 LINK ZN ZN A 702 NE2 HIS A 97 1555 1555 2.03 LINK NA NA A 703 O HOH A1096 1555 1555 2.41 LINK NA NA A 703 O HOH A1024 1555 1555 2.34 LINK NA NA A 703 O HOH A1026 1555 1555 2.35 LINK NA NA A 703 OH TYR A 218 1555 1555 2.42 LINK NA NA A 703 O HOH A1028 1555 1555 2.48 LINK NA NA A 703 O HOH A1025 1555 1555 2.43 LINK NA NA A 704 OG SER A 51 1555 1555 2.47 LINK NA NA A 704 O HOH A1046 1555 1555 2.39 LINK NA NA A 704 O HOH A1048 1555 1555 2.41 LINK NA NA A 704 O HOH A1142 1555 1555 2.51 LINK NA NA A 704 O HOH A1086 1555 1555 2.39 LINK NA NA A 705 O HOH A1073 1555 1555 2.51 LINK NA NA A 705 O HOH A1087 1555 1555 2.44 LINK NA NA A 705 OG1 THR A 268 1555 1555 2.48 LINK NA NA A 705 O HOH A1090 1555 1555 2.47 LINK NA NA A 705 OG SER A 270 1555 1555 2.37 LINK NA NA A 705 O HOH A1133 1555 1555 2.43 LINK NA NA A 704 OD1 ASN A 74 1555 11655 2.46 CISPEP 1 ASP A 117 ASP A 118 0 0.72 SITE 1 AC1 6 THR A 194 SER A 199 THR A 202 GLN A 203 SITE 2 AC1 6 LEU A 262 HOH A1061 SITE 1 AC2 7 ALA A 8 ALA A 12 TRP A 13 GLN A 16 SITE 2 AC2 7 ASN A 135 HOH A1100 HOH A1161 SITE 1 AC3 6 ASP A 117 GLU A 152 HIS A 256 ZN A 702 SITE 2 AC3 6 HOH A1095 HOH A1189 SITE 1 AC4 5 HIS A 97 ASP A 117 ASP A 179 ZN A 701 SITE 2 AC4 5 HOH A1095 SITE 1 AC5 6 TYR A 218 HOH A1024 HOH A1025 HOH A1026 SITE 2 AC5 6 HOH A1028 HOH A1096 SITE 1 AC6 6 SER A 51 ASN A 74 HOH A1046 HOH A1048 SITE 2 AC6 6 HOH A1086 HOH A1142 SITE 1 AC7 6 THR A 268 SER A 270 HOH A1073 HOH A1087 SITE 2 AC7 6 HOH A1090 HOH A1133 CRYST1 109.936 109.936 91.369 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009096 0.005252 0.000000 0.00000 SCALE2 0.000000 0.010503 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010945 0.00000