data_1RTU # _entry.id 1RTU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RTU pdb_00001rtu 10.2210/pdb1rtu/pdb WWPDB D_1000176226 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RTU _pdbx_database_status.recvd_initial_deposition_date 1995-05-12 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Noguchi, S.' 1 'Satow, Y.' 2 'Uchida, T.' 3 'Sasaki, C.' 4 'Matsuzaki, T.' 5 # _citation.id primary _citation.title 'Crystal structure of Ustilago sphaerogena ribonuclease U2 at 1.8 A resolution.' _citation.journal_abbrev Biochemistry _citation.journal_volume 34 _citation.page_first 15583 _citation.page_last 15591 _citation.year 1995 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7492561 _citation.pdbx_database_id_DOI 10.1021/bi00047a025 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Noguchi, S.' 1 ? primary 'Satow, Y.' 2 ? primary 'Uchida, T.' 3 ? primary 'Sasaki, C.' 4 ? primary 'Matsuzaki, T.' 5 ? # _cell.entry_id 1RTU _cell.length_a 49.320 _cell.length_b 61.270 _cell.length_c 34.950 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1RTU _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'RIBONUCLEASE U2' 12392.090 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 141 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;CDIPQSTNCGGNVYSNDDINTAIQGALDDVANGDRPDNYPHQYY(IAS)EASEDITLCCGSGPWSEFPLVYNGPYYSSRD NYVSPGPDRVIYQTNTGEFCATVTHTGAASYDGFTQCS ; _entity_poly.pdbx_seq_one_letter_code_can ;CDIPQSTNCGGNVYSNDDINTAIQGALDDVANGDRPDNYPHQYYDEASEDITLCCGSGPWSEFPLVYNGPYYSSRDNYVS PGPDRVIYQTNTGEFCATVTHTGAASYDGFTQCS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 ASP n 1 3 ILE n 1 4 PRO n 1 5 GLN n 1 6 SER n 1 7 THR n 1 8 ASN n 1 9 CYS n 1 10 GLY n 1 11 GLY n 1 12 ASN n 1 13 VAL n 1 14 TYR n 1 15 SER n 1 16 ASN n 1 17 ASP n 1 18 ASP n 1 19 ILE n 1 20 ASN n 1 21 THR n 1 22 ALA n 1 23 ILE n 1 24 GLN n 1 25 GLY n 1 26 ALA n 1 27 LEU n 1 28 ASP n 1 29 ASP n 1 30 VAL n 1 31 ALA n 1 32 ASN n 1 33 GLY n 1 34 ASP n 1 35 ARG n 1 36 PRO n 1 37 ASP n 1 38 ASN n 1 39 TYR n 1 40 PRO n 1 41 HIS n 1 42 GLN n 1 43 TYR n 1 44 TYR n 1 45 IAS n 1 46 GLU n 1 47 ALA n 1 48 SER n 1 49 GLU n 1 50 ASP n 1 51 ILE n 1 52 THR n 1 53 LEU n 1 54 CYS n 1 55 CYS n 1 56 GLY n 1 57 SER n 1 58 GLY n 1 59 PRO n 1 60 TRP n 1 61 SER n 1 62 GLU n 1 63 PHE n 1 64 PRO n 1 65 LEU n 1 66 VAL n 1 67 TYR n 1 68 ASN n 1 69 GLY n 1 70 PRO n 1 71 TYR n 1 72 TYR n 1 73 SER n 1 74 SER n 1 75 ARG n 1 76 ASP n 1 77 ASN n 1 78 TYR n 1 79 VAL n 1 80 SER n 1 81 PRO n 1 82 GLY n 1 83 PRO n 1 84 ASP n 1 85 ARG n 1 86 VAL n 1 87 ILE n 1 88 TYR n 1 89 GLN n 1 90 THR n 1 91 ASN n 1 92 THR n 1 93 GLY n 1 94 GLU n 1 95 PHE n 1 96 CYS n 1 97 ALA n 1 98 THR n 1 99 VAL n 1 100 THR n 1 101 HIS n 1 102 THR n 1 103 GLY n 1 104 ALA n 1 105 ALA n 1 106 SER n 1 107 TYR n 1 108 ASP n 1 109 GLY n 1 110 PHE n 1 111 THR n 1 112 GLN n 1 113 CYS n 1 114 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Ustilago sphaerogena' _entity_src_nat.pdbx_ncbi_taxonomy_id 5271 _entity_src_nat.genus Ustilago _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc 12421 _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RNU2_USTSP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P00654 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;CDIPQSTNCGGNVYSNDDINTAIQGALDDVANGDRPDNYPHQYYDEASEDITLCCGSGPWSEFPLVYNGPYYSSRDNYVS PGPDRVIYQTNTGEFCATVTHTGAASYDGFTQCS ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1RTU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00654 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 114 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 114 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 IAS 'L-beta-peptide, C-gamma linking' . 'BETA-L-ASPARTIC ACID' 'L-aspartic acid' 'C4 H7 N O4' 133.103 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1RTU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.4 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;CRYSTALS WERE PREPARED BY HANGING-DROP VAPOUR-DIFFUSION METHOD AT 293 KELVIN FROM A 20 MG/ML PROTEIN SOLUTION CONTAINING 15 MG/ML 2'-DEOXY 2'-FLUORO ADENYLYL-3',5'-CYTIDINE, 0.4M AMMONIUM SULFATE, EQUILIBRATED AGAINST A RESERVOIR OF 0.9M AMMONIUM SULFATE CONTAINING 0.1M ACETATE BUFFER (PH 4.5)., vapor diffusion - hanging drop ; # _diffrn.id 1 _diffrn.ambient_temp 284 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type FUJI _diffrn_detector.pdbx_collection_date 1990-05-22 _diffrn_detector.details 'DOUBLE FOCUSSING MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 0.9000 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1RTU _reflns.observed_criterion_sigma_I 1. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 12.0 _reflns.d_resolution_high 1.8 _reflns.number_obs 9903 _reflns.number_all ? _reflns.percent_possible_obs 96.1 _reflns.pdbx_Rmerge_I_obs 0.0342 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.87 _reflns_shell.percent_possible_all 86.4 _reflns_shell.Rmerge_I_obs 0.077 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1RTU _refine.ls_number_reflns_obs 9807 _refine.ls_number_reflns_all 9807 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 1.8 _refine.ls_percent_reflns_obs 96.5 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.143 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 13.4 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'RNASE T1 (PDB ENTRY 1RNT)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1RTU _refine_analyze.Luzzati_coordinate_error_obs 0.13 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 870 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 141 _refine_hist.number_atoms_total 1016 _refine_hist.d_res_high 1.8 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.014 0.020 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.028 0.030 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.041 0.050 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 0.760 1.000 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 1.214 1.500 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 1.730 1.500 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 2.720 2.000 ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.014 0.020 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.170 0.150 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.157 0.300 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.147 0.300 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd 0.173 0.300 ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 2.6 3.0 ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 12.4 15.0 ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor 25.2 20.0 ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1RTU _pdbx_refine.R_factor_all_no_cutoff 0.143 _pdbx_refine.R_factor_obs_no_cutoff 0.141 _pdbx_refine.free_R_factor_no_cutoff 0.178 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 10. _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1RTU _struct.title 'USTILAGO SPHAEROGENA RIBONUCLEASE U2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RTU _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, ENDORIBONUCLEASE, BETA-ISOMERIZED ASPARTATE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 16 ? ASN A 32 ? ASN A 16 ASN A 32 1 ? 17 HELX_P HELX_P2 2 PRO A 36 ? ASN A 38 ? PRO A 36 ASN A 38 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 A CYS 54 SG ? ? A CYS 1 A CYS 54 1_555 ? ? ? ? ? ? ? 2.074 ? ? disulf2 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 113 SG ? ? A CYS 9 A CYS 113 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf3 disulf ? ? A CYS 55 SG ? ? ? 1_555 A CYS 96 SG ? ? A CYS 55 A CYS 96 1_555 ? ? ? ? ? ? ? 2.004 ? ? covale1 covale both ? A TYR 44 C ? ? ? 1_555 A IAS 45 N ? ? A TYR 44 A IAS 45 1_555 ? ? ? ? ? ? ? 1.304 ? ? covale2 covale both ? A IAS 45 CG ? ? ? 1_555 A GLU 46 N ? ? A IAS 45 A GLU 46 1_555 ? ? ? ? ? ? ? 1.353 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 39 A . ? TYR 39 A PRO 40 A ? PRO 40 A 1 -3.98 2 GLY 58 A . ? GLY 58 A PRO 59 A ? PRO 59 A 1 0.88 3 GLY 69 A . ? GLY 69 A PRO 70 A ? PRO 70 A 1 1.45 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 6 ? CYS A 9 ? SER A 6 CYS A 9 A 2 ASN A 12 ? SER A 15 ? ASN A 12 SER A 15 B 1 HIS A 41 ? TYR A 43 ? HIS A 41 TYR A 43 B 2 TRP A 60 ? PRO A 64 ? TRP A 60 PRO A 64 B 3 ASP A 84 ? GLN A 89 ? ASP A 84 GLN A 89 B 4 PHE A 95 ? THR A 100 ? PHE A 95 THR A 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 7 ? O THR A 7 N TYR A 14 ? N TYR A 14 B 1 2 O HIS A 41 ? O HIS A 41 N GLU A 62 ? N GLU A 62 B 2 3 O SER A 61 ? O SER A 61 N TYR A 88 ? N TYR A 88 B 3 4 O ARG A 85 ? O ARG A 85 N VAL A 99 ? N VAL A 99 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details CAT Unknown ? ? ? ? 5 'CATALYTIC SITE.' AC1 Software A SO4 201 ? 7 'BINDING SITE FOR RESIDUE SO4 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CAT 5 TYR A 39 ? TYR A 39 . ? 1_555 ? 2 CAT 5 HIS A 41 ? HIS A 41 . ? 1_555 ? 3 CAT 5 GLU A 62 ? GLU A 62 . ? 1_555 ? 4 CAT 5 ARG A 85 ? ARG A 85 . ? 1_555 ? 5 CAT 5 HIS A 101 ? HIS A 101 . ? 1_555 ? 6 AC1 7 TYR A 39 ? TYR A 39 . ? 1_555 ? 7 AC1 7 HIS A 41 ? HIS A 41 . ? 1_555 ? 8 AC1 7 GLU A 62 ? GLU A 62 . ? 1_555 ? 9 AC1 7 ARG A 85 ? ARG A 85 . ? 1_555 ? 10 AC1 7 HIS A 101 ? HIS A 101 . ? 1_555 ? 11 AC1 7 PHE A 110 ? PHE A 110 . ? 1_555 ? 12 AC1 7 HOH C . ? HOH A 396 . ? 1_555 ? # _database_PDB_matrix.entry_id 1RTU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RTU _atom_sites.fract_transf_matrix[1][1] 0.020276 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016321 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028612 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 1 CYS CYS A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 IAS 45 45 45 IAS ASP A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 CYS 54 54 54 CYS CYS A . n A 1 55 CYS 55 55 55 CYS CYS A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 TRP 60 60 60 TRP TRP A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 CYS 96 96 96 CYS CYS A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 HIS 101 101 101 HIS HIS A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 CYS 113 113 113 CYS CYS A . n A 1 114 SER 114 114 114 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 201 SO4 SO4 A . C 3 HOH 1 301 301 HOH HOH A . C 3 HOH 2 302 302 HOH HOH A . C 3 HOH 3 303 303 HOH HOH A . C 3 HOH 4 304 304 HOH HOH A . C 3 HOH 5 305 305 HOH HOH A . C 3 HOH 6 306 306 HOH HOH A . C 3 HOH 7 307 307 HOH HOH A . C 3 HOH 8 308 308 HOH HOH A . C 3 HOH 9 309 309 HOH HOH A . C 3 HOH 10 310 310 HOH HOH A . C 3 HOH 11 311 311 HOH HOH A . C 3 HOH 12 312 312 HOH HOH A . C 3 HOH 13 313 313 HOH HOH A . C 3 HOH 14 314 314 HOH HOH A . C 3 HOH 15 315 315 HOH HOH A . C 3 HOH 16 316 316 HOH HOH A . C 3 HOH 17 317 317 HOH HOH A . C 3 HOH 18 318 318 HOH HOH A . C 3 HOH 19 319 319 HOH HOH A . C 3 HOH 20 320 320 HOH HOH A . C 3 HOH 21 321 321 HOH HOH A . C 3 HOH 22 322 322 HOH HOH A . C 3 HOH 23 323 323 HOH HOH A . C 3 HOH 24 324 324 HOH HOH A . C 3 HOH 25 325 325 HOH HOH A . C 3 HOH 26 326 326 HOH HOH A . C 3 HOH 27 327 327 HOH HOH A . C 3 HOH 28 328 328 HOH HOH A . C 3 HOH 29 329 329 HOH HOH A . C 3 HOH 30 330 330 HOH HOH A . C 3 HOH 31 331 331 HOH HOH A . C 3 HOH 32 332 332 HOH HOH A . C 3 HOH 33 333 333 HOH HOH A . C 3 HOH 34 334 334 HOH HOH A . C 3 HOH 35 335 335 HOH HOH A . C 3 HOH 36 336 336 HOH HOH A . C 3 HOH 37 337 337 HOH HOH A . C 3 HOH 38 338 338 HOH HOH A . C 3 HOH 39 339 339 HOH HOH A . C 3 HOH 40 340 340 HOH HOH A . C 3 HOH 41 341 341 HOH HOH A . C 3 HOH 42 342 342 HOH HOH A . C 3 HOH 43 343 343 HOH HOH A . C 3 HOH 44 344 344 HOH HOH A . C 3 HOH 45 345 345 HOH HOH A . C 3 HOH 46 346 346 HOH HOH A . C 3 HOH 47 347 347 HOH HOH A . C 3 HOH 48 348 348 HOH HOH A . C 3 HOH 49 350 350 HOH HOH A . C 3 HOH 50 351 351 HOH HOH A . C 3 HOH 51 352 352 HOH HOH A . C 3 HOH 52 353 353 HOH HOH A . C 3 HOH 53 354 354 HOH HOH A . C 3 HOH 54 355 355 HOH HOH A . C 3 HOH 55 356 356 HOH HOH A . C 3 HOH 56 357 357 HOH HOH A . C 3 HOH 57 358 358 HOH HOH A . C 3 HOH 58 359 359 HOH HOH A . C 3 HOH 59 360 360 HOH HOH A . C 3 HOH 60 361 361 HOH HOH A . C 3 HOH 61 362 362 HOH HOH A . C 3 HOH 62 363 363 HOH HOH A . C 3 HOH 63 364 364 HOH HOH A . C 3 HOH 64 365 365 HOH HOH A . C 3 HOH 65 366 366 HOH HOH A . C 3 HOH 66 367 367 HOH HOH A . C 3 HOH 67 368 368 HOH HOH A . C 3 HOH 68 369 369 HOH HOH A . C 3 HOH 69 370 370 HOH HOH A . C 3 HOH 70 371 371 HOH HOH A . C 3 HOH 71 372 372 HOH HOH A . C 3 HOH 72 373 373 HOH HOH A . C 3 HOH 73 374 374 HOH HOH A . C 3 HOH 74 375 375 HOH HOH A . C 3 HOH 75 376 376 HOH HOH A . C 3 HOH 76 377 377 HOH HOH A . C 3 HOH 77 378 378 HOH HOH A . C 3 HOH 78 379 379 HOH HOH A . C 3 HOH 79 380 380 HOH HOH A . C 3 HOH 80 381 381 HOH HOH A . C 3 HOH 81 382 382 HOH HOH A . C 3 HOH 82 383 383 HOH HOH A . C 3 HOH 83 384 384 HOH HOH A . C 3 HOH 84 385 385 HOH HOH A . C 3 HOH 85 386 386 HOH HOH A . C 3 HOH 86 387 387 HOH HOH A . C 3 HOH 87 388 388 HOH HOH A . C 3 HOH 88 389 389 HOH HOH A . C 3 HOH 89 390 390 HOH HOH A . C 3 HOH 90 391 391 HOH HOH A . C 3 HOH 91 392 392 HOH HOH A . C 3 HOH 92 393 393 HOH HOH A . C 3 HOH 93 394 394 HOH HOH A . C 3 HOH 94 395 395 HOH HOH A . C 3 HOH 95 396 396 HOH HOH A . C 3 HOH 96 397 397 HOH HOH A . C 3 HOH 97 398 398 HOH HOH A . C 3 HOH 98 399 399 HOH HOH A . C 3 HOH 99 400 400 HOH HOH A . C 3 HOH 100 401 401 HOH HOH A . C 3 HOH 101 402 402 HOH HOH A . C 3 HOH 102 403 403 HOH HOH A . C 3 HOH 103 404 404 HOH HOH A . C 3 HOH 104 405 405 HOH HOH A . C 3 HOH 105 406 406 HOH HOH A . C 3 HOH 106 407 407 HOH HOH A . C 3 HOH 107 408 408 HOH HOH A . C 3 HOH 108 409 409 HOH HOH A . C 3 HOH 109 410 410 HOH HOH A . C 3 HOH 110 411 411 HOH HOH A . C 3 HOH 111 412 412 HOH HOH A . C 3 HOH 112 413 413 HOH HOH A . C 3 HOH 113 414 414 HOH HOH A . C 3 HOH 114 415 415 HOH HOH A . C 3 HOH 115 416 416 HOH HOH A . C 3 HOH 116 417 417 HOH HOH A . C 3 HOH 117 418 418 HOH HOH A . C 3 HOH 118 419 419 HOH HOH A . C 3 HOH 119 420 420 HOH HOH A . C 3 HOH 120 421 421 HOH HOH A . C 3 HOH 121 422 422 HOH HOH A . C 3 HOH 122 423 423 HOH HOH A . C 3 HOH 123 424 424 HOH HOH A . C 3 HOH 124 425 425 HOH HOH A . C 3 HOH 125 426 426 HOH HOH A . C 3 HOH 126 427 427 HOH HOH A . C 3 HOH 127 428 428 HOH HOH A . C 3 HOH 128 429 429 HOH HOH A . C 3 HOH 129 430 430 HOH HOH A . C 3 HOH 130 431 431 HOH HOH A . C 3 HOH 131 432 432 HOH HOH A . C 3 HOH 132 433 433 HOH HOH A . C 3 HOH 133 434 434 HOH HOH A . C 3 HOH 134 436 436 HOH HOH A . C 3 HOH 135 437 437 HOH HOH A . C 3 HOH 136 438 438 HOH HOH A . C 3 HOH 137 440 440 HOH HOH A . C 3 HOH 138 441 441 HOH HOH A . C 3 HOH 139 443 443 HOH HOH A . C 3 HOH 140 444 444 HOH HOH A . C 3 HOH 141 445 445 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-11-08 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2018-04-04 6 'Structure model' 1 5 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Non-polymer description' 6 5 'Structure model' Advisory 7 5 'Structure model' 'Data collection' 8 5 'Structure model' Other 9 6 'Structure model' Advisory 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Derived calculations' 12 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' diffrn_source 2 5 'Structure model' pdbx_database_status 3 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 4 5 'Structure model' pdbx_validate_polymer_linkage 5 6 'Structure model' database_2 6 6 'Structure model' pdbx_initial_refinement_model 7 6 'Structure model' pdbx_unobs_or_zero_occ_atoms 8 6 'Structure model' struct_conn 9 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_diffrn_source.type' 2 5 'Structure model' '_pdbx_database_status.process_site' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal OSCMGR 'data collection' '(LOCAL VERSION)' ? 1 TOMOKO 'data reduction' . ? 2 MARIKO 'data reduction' '(LOCAL PROGRAM)' ? 3 X-PLOR 'model building' . ? 4 PROLSQ refinement . ? 5 X-PLOR refinement . ? 6 OSC 'data reduction' '(LOCAL VERSION)' ? 7 A 'data scaling' 'PROGRAM BY TOMOKO' ? 8 MARIKO 'data scaling' . ? 9 X-PLOR phasing . ? 10 # _pdbx_entry_details.entry_id 1RTU _pdbx_entry_details.compound_details ;ASP 45 IS ISOMERIZED TO L-ISOASPARTATE. A PEPTIDE BOND IS FORMED BETWEEN ASP 45 CG AND GLU 46 N. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 392 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 431 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_565 _pdbx_validate_symm_contact.dist 2.15 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLN 5 ? CD ? A GLN 5 CD 2 1 Y 0 A GLN 5 ? OE1 ? A GLN 5 OE1 3 1 Y 0 A GLN 5 ? NE2 ? A GLN 5 NE2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1RNT _pdbx_initial_refinement_model.details 'RNASE T1 (PDB ENTRY 1RNT)' #