HEADER    HYDROLASE                               12-MAY-95   1RTU              
TITLE     USTILAGO SPHAEROGENA RIBONUCLEASE U2                                  
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: RIBONUCLEASE U2;                                           
COMPND   3 CHAIN: A                                                             
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: USTILAGO SPHAEROGENA;                           
SOURCE   3 ORGANISM_TAXID: 5271;                                                
SOURCE   4 ATCC: 12421                                                          
KEYWDS    HYDROLASE, ENDORIBONUCLEASE, BETA-ISOMERIZED ASPARTATE                
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    S.NOGUCHI,Y.SATOW,T.UCHIDA,C.SASAKI,T.MATSUZAKI                       
REVDAT   9   13-NOV-24 1RTU    1       REMARK                                   
REVDAT   8   09-AUG-23 1RTU    1       REMARK LINK                              
REVDAT   7   04-APR-18 1RTU    1       REMARK                                   
REVDAT   6   27-JUL-11 1RTU    1       HETNAM HETSYN REMARK                     
REVDAT   5   13-JUL-11 1RTU    1       VERSN                                    
REVDAT   4   14-APR-10 1RTU    1       ATOM                                     
REVDAT   3   08-SEP-09 1RTU    1       HET                                      
REVDAT   2   24-FEB-09 1RTU    1       VERSN                                    
REVDAT   1   08-NOV-96 1RTU    0                                                
JRNL        AUTH   S.NOGUCHI,Y.SATOW,T.UCHIDA,C.SASAKI,T.MATSUZAKI              
JRNL        TITL   CRYSTAL STRUCTURE OF USTILAGO SPHAEROGENA RIBONUCLEASE U2 AT 
JRNL        TITL 2 1.8 A RESOLUTION.                                            
JRNL        REF    BIOCHEMISTRY                  V.  34 15583 1995              
JRNL        REFN                   ISSN 0006-2960                               
JRNL        PMID   7492561                                                      
JRNL        DOI    10.1021/BI00047A025                                          
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.80 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PROLSQ                                               
REMARK   3   AUTHORS     : KONNERT,HENDRICKSON                                  
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 8.00                           
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 96.5                           
REMARK   3   NUMBER OF REFLECTIONS             : 9807                           
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : NULL                            
REMARK   3   FREE R VALUE TEST SET SELECTION  : NULL                            
REMARK   3   R VALUE     (WORKING + TEST SET) : NULL                            
REMARK   3   R VALUE            (WORKING SET) : NULL                            
REMARK   3   FREE R VALUE                     : NULL                            
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : NULL                            
REMARK   3   FREE R VALUE TEST SET COUNT      : NULL                            
REMARK   3                                                                      
REMARK   3  FIT/AGREEMENT OF MODEL WITH ALL DATA.                               
REMARK   3   R VALUE   (WORKING + TEST SET, NO CUTOFF) : 0.1430                 
REMARK   3   R VALUE          (WORKING SET, NO CUTOFF) : 0.1410                 
REMARK   3   FREE R VALUE                  (NO CUTOFF) : 0.178                  
REMARK   3   FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 10.000                 
REMARK   3   FREE R VALUE TEST SET COUNT   (NO CUTOFF) : NULL                   
REMARK   3   TOTAL NUMBER OF REFLECTIONS   (NO CUTOFF) : 9807                   
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 870                                     
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 5                                       
REMARK   3   SOLVENT ATOMS            : 141                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 13.40                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.13                            
REMARK   3   ESD FROM SIGMAA              (A) : NULL                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : NULL                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   DISTANCE RESTRAINTS.                    RMS    SIGMA               
REMARK   3    BOND LENGTH                     (A) : 0.014 ; 0.020               
REMARK   3    ANGLE DISTANCE                  (A) : 0.028 ; 0.030               
REMARK   3    INTRAPLANAR 1-4 DISTANCE        (A) : 0.041 ; 0.050               
REMARK   3    H-BOND OR METAL COORDINATION    (A) : NULL  ; NULL                
REMARK   3                                                                      
REMARK   3   PLANE RESTRAINT                  (A) : 0.014 ; 0.020               
REMARK   3   CHIRAL-CENTER RESTRAINT       (A**3) : 0.170 ; 0.150               
REMARK   3                                                                      
REMARK   3   NON-BONDED CONTACT RESTRAINTS.                                     
REMARK   3    SINGLE TORSION                  (A) : 0.157 ; 0.300               
REMARK   3    MULTIPLE TORSION                (A) : 0.147 ; 0.300               
REMARK   3    H-BOND (X...Y)                  (A) : 0.173 ; 0.300               
REMARK   3    H-BOND (X-H...Y)                (A) : NULL  ; NULL                
REMARK   3                                                                      
REMARK   3   CONFORMATIONAL TORSION ANGLE RESTRAINTS.                           
REMARK   3    SPECIFIED                 (DEGREES) : NULL  ; NULL                
REMARK   3    PLANAR                    (DEGREES) : 2.600 ; 3.000               
REMARK   3    STAGGERED                 (DEGREES) : 12.400; 15.000              
REMARK   3    TRANSVERSE                (DEGREES) : 25.200; 20.000              
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND               (A**2) : 0.760 ; 1.000               
REMARK   3   MAIN-CHAIN ANGLE              (A**2) : 1.214 ; 1.500               
REMARK   3   SIDE-CHAIN BOND               (A**2) : 1.730 ; 1.500               
REMARK   3   SIDE-CHAIN ANGLE              (A**2) : 2.720 ; 2.000               
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1RTU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.                                
REMARK 100 THE DEPOSITION ID IS D_1000176226.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 22-MAY-90                          
REMARK 200  TEMPERATURE           (KELVIN) : 284                                
REMARK 200  PH                             : 4.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : PHOTON FACTORY                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.9000                             
REMARK 200  MONOCHROMATOR                  : SI(111)                            
REMARK 200  OPTICS                         : DOUBLE FOCUSSING MIRROR            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : FUJI                               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : TOMOKO, MARIKO (LOCAL PROGRAM),    
REMARK 200                                   OSC (LOCAL VERSION)                
REMARK 200  DATA SCALING SOFTWARE          : A PROGRAM BY TOMOKO, MARIKO        
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 9903                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.800                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 12.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 1.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 96.1                               
REMARK 200  DATA REDUNDANCY                : 4.000                              
REMARK 200  R MERGE                    (I) : 0.03420                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.87                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 86.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 3.00                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.07700                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: NULL                                           
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: X-PLOR                                                
REMARK 200 STARTING MODEL: RNASE T1 (PDB ENTRY 1RNT)                            
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 42.40                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE PREPARED BY HANGING-DROP   
REMARK 280  VAPOUR-DIFFUSION METHOD AT 293 KELVIN FROM A 20 MG/ML PROTEIN       
REMARK 280  SOLUTION CONTAINING 15 MG/ML 2'-DEOXY 2'-FLUORO ADENYLYL-3',5'-     
REMARK 280  CYTIDINE, 0.4M AMMONIUM SULFATE, EQUILIBRATED AGAINST A             
REMARK 280  RESERVOIR OF 0.9M AMMONIUM SULFATE CONTAINING 0.1M ACETATE          
REMARK 280  BUFFER (PH 4.5)., VAPOR DIFFUSION - HANGING DROP, VAPOR             
REMARK 280  DIFFUSION, HANGING DROP                                             
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       24.66000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       17.47500            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       30.63500            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       17.47500            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       24.66000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       30.63500            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 400                                                                      
REMARK 400 COMPOUND                                                             
REMARK 400 ASP 45 IS ISOMERIZED TO L-ISOASPARTATE.  A PEPTIDE                   
REMARK 400 BOND IS FORMED BETWEEN ASP 45 CG AND GLU 46 N.                       
REMARK 480                                                                      
REMARK 480 ZERO OCCUPANCY ATOM                                                  
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO                  
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS                
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;              
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):         
REMARK 480   M RES C SSEQI ATOMS                                                
REMARK 480     GLN A    5   CD   OE1  NE2                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   O    HOH A   392     O    HOH A   431     2565     2.15            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: CAT                                                 
REMARK 800 EVIDENCE_CODE: UNKNOWN                                               
REMARK 800 SITE_DESCRIPTION: CATALYTIC SITE.                                    
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201                 
DBREF  1RTU A    1   114  UNP    P00654   RNU2_USTSP       1    114             
SEQRES   1 A  114  CYS ASP ILE PRO GLN SER THR ASN CYS GLY GLY ASN VAL          
SEQRES   2 A  114  TYR SER ASN ASP ASP ILE ASN THR ALA ILE GLN GLY ALA          
SEQRES   3 A  114  LEU ASP ASP VAL ALA ASN GLY ASP ARG PRO ASP ASN TYR          
SEQRES   4 A  114  PRO HIS GLN TYR TYR IAS GLU ALA SER GLU ASP ILE THR          
SEQRES   5 A  114  LEU CYS CYS GLY SER GLY PRO TRP SER GLU PHE PRO LEU          
SEQRES   6 A  114  VAL TYR ASN GLY PRO TYR TYR SER SER ARG ASP ASN TYR          
SEQRES   7 A  114  VAL SER PRO GLY PRO ASP ARG VAL ILE TYR GLN THR ASN          
SEQRES   8 A  114  THR GLY GLU PHE CYS ALA THR VAL THR HIS THR GLY ALA          
SEQRES   9 A  114  ALA SER TYR ASP GLY PHE THR GLN CYS SER                      
HET    IAS  A  45       8                                                       
HET    SO4  A 201       5                                                       
HETNAM     IAS BETA-L-ASPARTIC ACID                                             
HETNAM     SO4 SULFATE ION                                                      
HETSYN     IAS L-ASPARTIC ACID                                                  
FORMUL   1  IAS    C4 H7 N O4                                                   
FORMUL   2  SO4    O4 S 2-                                                      
FORMUL   3  HOH   *141(H2 O)                                                    
HELIX    1   1 ASN A   16  ASN A   32  1                                  17    
HELIX    2   2 PRO A   36  ASN A   38  5                                   3    
SHEET    1   A 2 SER A   6  CYS A   9  0                                        
SHEET    2   A 2 ASN A  12  SER A  15 -1  N  TYR A  14   O  THR A   7           
SHEET    1   B 4 HIS A  41  TYR A  43  0                                        
SHEET    2   B 4 TRP A  60  PRO A  64 -1  N  GLU A  62   O  HIS A  41           
SHEET    3   B 4 ASP A  84  GLN A  89 -1  N  TYR A  88   O  SER A  61           
SHEET    4   B 4 PHE A  95  THR A 100 -1  N  VAL A  99   O  ARG A  85           
SSBOND   1 CYS A    1    CYS A   54                          1555   1555  2.07  
SSBOND   2 CYS A    9    CYS A  113                          1555   1555  2.04  
SSBOND   3 CYS A   55    CYS A   96                          1555   1555  2.00  
LINK         C   TYR A  44                 N   IAS A  45     1555   1555  1.30  
LINK         CG  IAS A  45                 N   GLU A  46     1555   1555  1.35  
CISPEP   1 TYR A   39    PRO A   40          0        -3.98                     
CISPEP   2 GLY A   58    PRO A   59          0         0.88                     
CISPEP   3 GLY A   69    PRO A   70          0         1.45                     
SITE     1 CAT  5 TYR A  39  HIS A  41  GLU A  62  ARG A  85                    
SITE     2 CAT  5 HIS A 101                                                     
SITE     1 AC1  7 TYR A  39  HIS A  41  GLU A  62  ARG A  85                    
SITE     2 AC1  7 HIS A 101  PHE A 110  HOH A 396                               
CRYST1   49.320   61.270   34.950  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.020276  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.016321  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.028612        0.00000