data_1RTV # _entry.id 1RTV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RTV pdb_00001rtv 10.2210/pdb1rtv/pdb RCSB RCSB021030 ? ? WWPDB D_1000021030 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RTV _pdbx_database_status.recvd_initial_deposition_date 2003-12-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dong, C.J.' 1 'Naismith, J.H.' 2 # _citation.id primary _citation.title 'RmlC (dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase) crystal structure from Pseudomonas aeruginosa, apo structure' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dong, C.J.' 1 ? primary 'Naismith, J.H.' 2 ? # _cell.entry_id 1RTV _cell.length_a 57.833 _cell.length_b 57.833 _cell.length_c 161.620 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RTV _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'dTDP-4-dehydrorhamnose 3,5-epimerase' 21082.795 1 5.1.3.13 ? ? ? 2 non-polymer syn 'S,R MESO-TARTARIC ACID' 150.087 1 ? ? ? ? 3 water nat water 18.015 20 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RmlC, dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMAMKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATL GEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWP LQDAPLLSEKDRQGKAFADADCFP ; _entity_poly.pdbx_seq_one_letter_code_can ;SMAMKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATL GEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWP LQDAPLLSEKDRQGKAFADADCFP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 ALA n 1 4 MET n 1 5 LYS n 1 6 ALA n 1 7 THR n 1 8 ARG n 1 9 LEU n 1 10 ALA n 1 11 ILE n 1 12 PRO n 1 13 ASP n 1 14 VAL n 1 15 ILE n 1 16 LEU n 1 17 PHE n 1 18 GLU n 1 19 PRO n 1 20 ARG n 1 21 VAL n 1 22 PHE n 1 23 GLY n 1 24 ASP n 1 25 ASP n 1 26 ARG n 1 27 GLY n 1 28 PHE n 1 29 PHE n 1 30 PHE n 1 31 GLU n 1 32 SER n 1 33 TYR n 1 34 ASN n 1 35 GLN n 1 36 ARG n 1 37 ALA n 1 38 PHE n 1 39 GLU n 1 40 GLU n 1 41 ALA n 1 42 CYS n 1 43 GLY n 1 44 HIS n 1 45 PRO n 1 46 VAL n 1 47 SER n 1 48 PHE n 1 49 VAL n 1 50 GLN n 1 51 ASP n 1 52 ASN n 1 53 HIS n 1 54 SER n 1 55 ARG n 1 56 SER n 1 57 ALA n 1 58 ARG n 1 59 GLY n 1 60 VAL n 1 61 LEU n 1 62 ARG n 1 63 GLY n 1 64 LEU n 1 65 HIS n 1 66 TYR n 1 67 GLN n 1 68 ILE n 1 69 ARG n 1 70 GLN n 1 71 ALA n 1 72 GLN n 1 73 GLY n 1 74 LYS n 1 75 LEU n 1 76 VAL n 1 77 ARG n 1 78 ALA n 1 79 THR n 1 80 LEU n 1 81 GLY n 1 82 GLU n 1 83 VAL n 1 84 PHE n 1 85 ASP n 1 86 VAL n 1 87 ALA n 1 88 VAL n 1 89 ASP n 1 90 LEU n 1 91 ARG n 1 92 ARG n 1 93 GLY n 1 94 SER n 1 95 PRO n 1 96 THR n 1 97 PHE n 1 98 GLY n 1 99 GLN n 1 100 TRP n 1 101 VAL n 1 102 GLY n 1 103 GLU n 1 104 ARG n 1 105 LEU n 1 106 SER n 1 107 ALA n 1 108 GLU n 1 109 ASN n 1 110 LYS n 1 111 ARG n 1 112 GLN n 1 113 MET n 1 114 TRP n 1 115 ILE n 1 116 PRO n 1 117 ALA n 1 118 GLY n 1 119 PHE n 1 120 ALA n 1 121 HIS n 1 122 GLY n 1 123 PHE n 1 124 VAL n 1 125 VAL n 1 126 LEU n 1 127 SER n 1 128 GLU n 1 129 TYR n 1 130 ALA n 1 131 GLU n 1 132 PHE n 1 133 LEU n 1 134 TYR n 1 135 LYS n 1 136 THR n 1 137 THR n 1 138 ASP n 1 139 PHE n 1 140 TRP n 1 141 ALA n 1 142 PRO n 1 143 GLU n 1 144 HIS n 1 145 GLU n 1 146 ARG n 1 147 CYS n 1 148 ILE n 1 149 VAL n 1 150 TRP n 1 151 ASN n 1 152 ASP n 1 153 PRO n 1 154 GLU n 1 155 LEU n 1 156 LYS n 1 157 ILE n 1 158 ASP n 1 159 TRP n 1 160 PRO n 1 161 LEU n 1 162 GLN n 1 163 ASP n 1 164 ALA n 1 165 PRO n 1 166 LEU n 1 167 LEU n 1 168 SER n 1 169 GLU n 1 170 LYS n 1 171 ASP n 1 172 ARG n 1 173 GLN n 1 174 GLY n 1 175 LYS n 1 176 ALA n 1 177 PHE n 1 178 ALA n 1 179 ASP n 1 180 ALA n 1 181 ASP n 1 182 CYS n 1 183 PHE n 1 184 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pseudomonas _entity_src_gen.pdbx_gene_src_gene rmlc _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET23a(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9HU21_PSEAE _struct_ref.pdbx_db_accession Q9HU21 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATLGEV FDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQD APLLSEKDRQGKAFADADCFP ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1RTV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 184 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9HU21 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 181 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 181 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1RTV SER A 1 ? UNP Q9HU21 ? ? 'cloning artifact' -2 1 1 1RTV MET A 2 ? UNP Q9HU21 ? ? 'cloning artifact' -1 2 1 1RTV ALA A 3 ? UNP Q9HU21 ? ? 'cloning artifact' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SRT non-polymer . 'S,R MESO-TARTARIC ACID' ? 'C4 H6 O6' 150.087 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1RTV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 61.60 _exptl_crystal.description ? _exptl_crystal.density_Matthews 3.20 # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.2M Sodium tartrate, 0.1M MOPS, 8% PEG 8000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAC Science DIP-2000' _diffrn_detector.pdbx_collection_date 2000-05-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ENRAF-NONIUS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1RTV _reflns.observed_criterion_sigma_F 2.367 _reflns.observed_criterion_sigma_I 1.8 _reflns.d_resolution_high 2.5 _reflns.d_resolution_low 40.4 _reflns.number_all 9732 _reflns.number_obs 9710 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_Rsym_value 0.088 _reflns.pdbx_netI_over_sigmaI 6.8 _reflns.B_iso_Wilson_estimate 56.26 _reflns.pdbx_redundancy 7.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.67 _reflns_shell.percent_possible_all 94.4 _reflns_shell.Rmerge_I_obs 0.455 _reflns_shell.pdbx_Rsym_value 0.419 _reflns_shell.meanI_over_sigI_obs 4 _reflns_shell.pdbx_redundancy 6.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1298 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1RTV _refine.ls_number_reflns_obs 9166 _refine.ls_number_reflns_all 9710 _refine.pdbx_ls_sigma_I 1.8 _refine.pdbx_ls_sigma_F 2.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 54.23 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 95.17 _refine.ls_R_factor_obs 0.23326 _refine.ls_R_factor_all 0.25 _refine.ls_R_factor_R_work 0.23029 _refine.ls_R_factor_R_free 0.28971 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 485 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.924 _refine.correlation_coeff_Fo_to_Fc_free 0.870 _refine.B_iso_mean 30.642 _refine.aniso_B[1][1] 2.35 _refine.aniso_B[2][2] 2.35 _refine.aniso_B[3][3] -4.70 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'pdb entry 1DZR' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model overall _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.425 _refine.pdbx_overall_ESU_R_Free 0.307 _refine.overall_SU_ML 0.315 _refine.overall_SU_B 14.086 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1490 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 1520 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 54.23 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.021 ? 1542 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1354 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.902 1.929 ? 2087 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.905 3.000 ? 3133 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.272 3.000 ? 183 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.518 15.000 ? 262 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.103 0.200 ? 211 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1751 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 359 'X-RAY DIFFRACTION' ? r_nbd_refined 0.278 0.300 ? 316 'X-RAY DIFFRACTION' ? r_nbd_other 0.256 0.300 ? 1281 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.109 0.500 ? 2 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.152 0.500 ? 85 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.253 0.500 ? 2 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.241 0.300 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.321 0.300 ? 64 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.788 0.500 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other 0.149 0.500 ? 1 'X-RAY DIFFRACTION' ? r_mcbond_it 0.642 1.500 ? 917 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.239 2.000 ? 1467 'X-RAY DIFFRACTION' ? r_scbond_it 1.796 3.000 ? 625 'X-RAY DIFFRACTION' ? r_scangle_it 3.051 4.500 ? 620 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.number_reflns_R_work 240 _refine_ls_shell.R_factor_R_work 0.314 _refine_ls_shell.percent_reflns_obs 99.4 _refine_ls_shell.R_factor_R_free 0.261 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 9 _refine_ls_shell.number_reflns_obs 1298 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1RTV _struct.title 'RmlC (dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase) crystal structure from Pseudomonas aeruginosa, apo structure' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RTV _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text 'RmlC, main beta sheet structure, ISOMERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a dimer.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 34 ? GLY A 43 ? ASN A 31 GLY A 40 1 ? 10 HELX_P HELX_P2 2 SER A 168 ? GLN A 173 ? SER A 165 GLN A 170 1 ? 6 HELX_P HELX_P3 3 ALA A 176 ? ALA A 180 ? ALA A 173 ALA A 177 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 5 ? ARG A 8 ? LYS A 2 ARG A 5 A 2 ILE A 15 ? GLU A 18 ? ILE A 12 GLU A 15 A 3 GLN A 112 ? ILE A 115 ? GLN A 109 ILE A 112 A 4 LYS A 74 ? LEU A 80 ? LYS A 71 LEU A 77 A 5 TYR A 129 ? THR A 136 ? TYR A 126 THR A 133 A 6 GLN A 50 ? ALA A 57 ? GLN A 47 ALA A 54 B 1 VAL A 21 ? ASP A 24 ? VAL A 18 ASP A 21 B 2 GLY A 27 ? PHE A 30 ? GLY A 24 PHE A 27 C 1 TRP A 100 ? SER A 106 ? TRP A 97 SER A 103 C 2 GLU A 82 ? ASP A 89 ? GLU A 79 ASP A 86 C 3 PHE A 119 ? VAL A 125 ? PHE A 116 VAL A 122 C 4 LEU A 61 ? GLN A 67 ? LEU A 58 GLN A 64 C 5 GLU A 145 ? CYS A 147 ? GLU A 142 CYS A 144 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 5 ? N LYS A 2 O GLU A 18 ? O GLU A 15 A 2 3 N ILE A 15 ? N ILE A 12 O TRP A 114 ? O TRP A 111 A 3 4 O ILE A 115 ? O ILE A 112 N LYS A 74 ? N LYS A 71 A 4 5 N LEU A 80 ? N LEU A 77 O GLU A 131 ? O GLU A 128 A 5 6 O ALA A 130 ? O ALA A 127 N SER A 56 ? N SER A 53 B 1 2 N ASP A 24 ? N ASP A 21 O GLY A 27 ? O GLY A 24 C 1 2 O GLU A 103 ? O GLU A 100 N ASP A 85 ? N ASP A 82 C 2 3 N VAL A 86 ? N VAL A 83 O GLY A 122 ? O GLY A 119 C 3 4 O HIS A 121 ? O HIS A 118 N HIS A 65 ? N HIS A 62 C 4 5 N TYR A 66 ? N TYR A 63 O ARG A 146 ? O ARG A 143 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SRT _struct_site.pdbx_auth_seq_id 182 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE SRT A 182' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ARG A 62 ? ARG A 59 . ? 1_555 ? 2 AC1 8 HIS A 65 ? HIS A 62 . ? 1_555 ? 3 AC1 8 LYS A 74 ? LYS A 71 . ? 1_555 ? 4 AC1 8 ARG A 92 ? ARG A 89 . ? 5_555 ? 5 AC1 8 HIS A 121 ? HIS A 118 . ? 1_555 ? 6 AC1 8 TYR A 134 ? TYR A 131 . ? 1_555 ? 7 AC1 8 TRP A 140 ? TRP A 137 . ? 1_555 ? 8 AC1 8 GLU A 145 ? GLU A 142 . ? 1_555 ? # _database_PDB_matrix.entry_id 1RTV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RTV _atom_sites.fract_transf_matrix[1][1] 0.017291 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017291 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006187 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 -2 SER SER A . n A 1 2 MET 2 -1 -1 MET MET A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 LYS 5 2 2 LYS LYS A . n A 1 6 ALA 6 3 3 ALA ALA A . n A 1 7 THR 7 4 4 THR THR A . n A 1 8 ARG 8 5 5 ARG ARG A . n A 1 9 LEU 9 6 6 LEU LEU A . n A 1 10 ALA 10 7 7 ALA ALA A . n A 1 11 ILE 11 8 8 ILE ILE A . n A 1 12 PRO 12 9 9 PRO PRO A . n A 1 13 ASP 13 10 10 ASP ASP A . n A 1 14 VAL 14 11 11 VAL VAL A . n A 1 15 ILE 15 12 12 ILE ILE A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 PHE 17 14 14 PHE PHE A . n A 1 18 GLU 18 15 15 GLU GLU A . n A 1 19 PRO 19 16 16 PRO PRO A . n A 1 20 ARG 20 17 17 ARG ARG A . n A 1 21 VAL 21 18 18 VAL VAL A . n A 1 22 PHE 22 19 19 PHE PHE A . n A 1 23 GLY 23 20 20 GLY GLY A . n A 1 24 ASP 24 21 21 ASP ASP A . n A 1 25 ASP 25 22 22 ASP ASP A . n A 1 26 ARG 26 23 23 ARG ARG A . n A 1 27 GLY 27 24 24 GLY GLY A . n A 1 28 PHE 28 25 25 PHE PHE A . n A 1 29 PHE 29 26 26 PHE PHE A . n A 1 30 PHE 30 27 27 PHE PHE A . n A 1 31 GLU 31 28 28 GLU GLU A . n A 1 32 SER 32 29 29 SER SER A . n A 1 33 TYR 33 30 30 TYR TYR A . n A 1 34 ASN 34 31 31 ASN ASN A . n A 1 35 GLN 35 32 32 GLN GLN A . n A 1 36 ARG 36 33 33 ARG ARG A . n A 1 37 ALA 37 34 34 ALA ALA A . n A 1 38 PHE 38 35 35 PHE PHE A . n A 1 39 GLU 39 36 36 GLU GLU A . n A 1 40 GLU 40 37 37 GLU GLU A . n A 1 41 ALA 41 38 38 ALA ALA A . n A 1 42 CYS 42 39 39 CYS CYS A . n A 1 43 GLY 43 40 40 GLY GLY A . n A 1 44 HIS 44 41 41 HIS HIS A . n A 1 45 PRO 45 42 42 PRO PRO A . n A 1 46 VAL 46 43 43 VAL VAL A . n A 1 47 SER 47 44 44 SER SER A . n A 1 48 PHE 48 45 45 PHE PHE A . n A 1 49 VAL 49 46 46 VAL VAL A . n A 1 50 GLN 50 47 47 GLN GLN A . n A 1 51 ASP 51 48 48 ASP ASP A . n A 1 52 ASN 52 49 49 ASN ASN A . n A 1 53 HIS 53 50 50 HIS HIS A . n A 1 54 SER 54 51 51 SER SER A . n A 1 55 ARG 55 52 52 ARG ARG A . n A 1 56 SER 56 53 53 SER SER A . n A 1 57 ALA 57 54 54 ALA ALA A . n A 1 58 ARG 58 55 55 ARG ARG A . n A 1 59 GLY 59 56 56 GLY GLY A . n A 1 60 VAL 60 57 57 VAL VAL A . n A 1 61 LEU 61 58 58 LEU LEU A . n A 1 62 ARG 62 59 59 ARG ARG A . n A 1 63 GLY 63 60 60 GLY GLY A . n A 1 64 LEU 64 61 61 LEU LEU A . n A 1 65 HIS 65 62 62 HIS HIS A . n A 1 66 TYR 66 63 63 TYR TYR A . n A 1 67 GLN 67 64 64 GLN GLN A . n A 1 68 ILE 68 65 65 ILE ILE A . n A 1 69 ARG 69 66 66 ARG ARG A . n A 1 70 GLN 70 67 67 GLN GLN A . n A 1 71 ALA 71 68 68 ALA ALA A . n A 1 72 GLN 72 69 69 GLN GLN A . n A 1 73 GLY 73 70 70 GLY GLY A . n A 1 74 LYS 74 71 71 LYS LYS A . n A 1 75 LEU 75 72 72 LEU LEU A . n A 1 76 VAL 76 73 73 VAL VAL A . n A 1 77 ARG 77 74 74 ARG ARG A . n A 1 78 ALA 78 75 75 ALA ALA A . n A 1 79 THR 79 76 76 THR THR A . n A 1 80 LEU 80 77 77 LEU LEU A . n A 1 81 GLY 81 78 78 GLY GLY A . n A 1 82 GLU 82 79 79 GLU GLU A . n A 1 83 VAL 83 80 80 VAL VAL A . n A 1 84 PHE 84 81 81 PHE PHE A . n A 1 85 ASP 85 82 82 ASP ASP A . n A 1 86 VAL 86 83 83 VAL VAL A . n A 1 87 ALA 87 84 84 ALA ALA A . n A 1 88 VAL 88 85 85 VAL VAL A . n A 1 89 ASP 89 86 86 ASP ASP A . n A 1 90 LEU 90 87 87 LEU LEU A . n A 1 91 ARG 91 88 88 ARG ARG A . n A 1 92 ARG 92 89 89 ARG ARG A . n A 1 93 GLY 93 90 90 GLY GLY A . n A 1 94 SER 94 91 91 SER SER A . n A 1 95 PRO 95 92 92 PRO PRO A . n A 1 96 THR 96 93 93 THR THR A . n A 1 97 PHE 97 94 94 PHE PHE A . n A 1 98 GLY 98 95 95 GLY GLY A . n A 1 99 GLN 99 96 96 GLN GLN A . n A 1 100 TRP 100 97 97 TRP TRP A . n A 1 101 VAL 101 98 98 VAL VAL A . n A 1 102 GLY 102 99 99 GLY GLY A . n A 1 103 GLU 103 100 100 GLU GLU A . n A 1 104 ARG 104 101 101 ARG ARG A . n A 1 105 LEU 105 102 102 LEU LEU A . n A 1 106 SER 106 103 103 SER SER A . n A 1 107 ALA 107 104 104 ALA ALA A . n A 1 108 GLU 108 105 105 GLU GLU A . n A 1 109 ASN 109 106 106 ASN ASN A . n A 1 110 LYS 110 107 107 LYS LYS A . n A 1 111 ARG 111 108 108 ARG ARG A . n A 1 112 GLN 112 109 109 GLN GLN A . n A 1 113 MET 113 110 110 MET MET A . n A 1 114 TRP 114 111 111 TRP TRP A . n A 1 115 ILE 115 112 112 ILE ILE A . n A 1 116 PRO 116 113 113 PRO PRO A . n A 1 117 ALA 117 114 114 ALA ALA A . n A 1 118 GLY 118 115 115 GLY GLY A . n A 1 119 PHE 119 116 116 PHE PHE A . n A 1 120 ALA 120 117 117 ALA ALA A . n A 1 121 HIS 121 118 118 HIS HIS A . n A 1 122 GLY 122 119 119 GLY GLY A . n A 1 123 PHE 123 120 120 PHE PHE A . n A 1 124 VAL 124 121 121 VAL VAL A . n A 1 125 VAL 125 122 122 VAL VAL A . n A 1 126 LEU 126 123 123 LEU LEU A . n A 1 127 SER 127 124 124 SER SER A . n A 1 128 GLU 128 125 125 GLU GLU A . n A 1 129 TYR 129 126 126 TYR TYR A . n A 1 130 ALA 130 127 127 ALA ALA A . n A 1 131 GLU 131 128 128 GLU GLU A . n A 1 132 PHE 132 129 129 PHE PHE A . n A 1 133 LEU 133 130 130 LEU LEU A . n A 1 134 TYR 134 131 131 TYR TYR A . n A 1 135 LYS 135 132 132 LYS LYS A . n A 1 136 THR 136 133 133 THR THR A . n A 1 137 THR 137 134 134 THR THR A . n A 1 138 ASP 138 135 135 ASP ASP A . n A 1 139 PHE 139 136 136 PHE PHE A . n A 1 140 TRP 140 137 137 TRP TRP A . n A 1 141 ALA 141 138 138 ALA ALA A . n A 1 142 PRO 142 139 139 PRO PRO A . n A 1 143 GLU 143 140 140 GLU GLU A . n A 1 144 HIS 144 141 141 HIS HIS A . n A 1 145 GLU 145 142 142 GLU GLU A . n A 1 146 ARG 146 143 143 ARG ARG A . n A 1 147 CYS 147 144 144 CYS CYS A . n A 1 148 ILE 148 145 145 ILE ILE A . n A 1 149 VAL 149 146 146 VAL VAL A . n A 1 150 TRP 150 147 147 TRP TRP A . n A 1 151 ASN 151 148 148 ASN ASN A . n A 1 152 ASP 152 149 149 ASP ASP A . n A 1 153 PRO 153 150 150 PRO PRO A . n A 1 154 GLU 154 151 151 GLU GLU A . n A 1 155 LEU 155 152 152 LEU LEU A . n A 1 156 LYS 156 153 153 LYS LYS A . n A 1 157 ILE 157 154 154 ILE ILE A . n A 1 158 ASP 158 155 155 ASP ASP A . n A 1 159 TRP 159 156 156 TRP TRP A . n A 1 160 PRO 160 157 157 PRO PRO A . n A 1 161 LEU 161 158 158 LEU LEU A . n A 1 162 GLN 162 159 159 GLN GLN A . n A 1 163 ASP 163 160 160 ASP ASP A . n A 1 164 ALA 164 161 161 ALA ALA A . n A 1 165 PRO 165 162 162 PRO PRO A . n A 1 166 LEU 166 163 163 LEU LEU A . n A 1 167 LEU 167 164 164 LEU LEU A . n A 1 168 SER 168 165 165 SER SER A . n A 1 169 GLU 169 166 166 GLU GLU A . n A 1 170 LYS 170 167 167 LYS LYS A . n A 1 171 ASP 171 168 168 ASP ASP A . n A 1 172 ARG 172 169 169 ARG ARG A . n A 1 173 GLN 173 170 170 GLN GLN A . n A 1 174 GLY 174 171 171 GLY GLY A . n A 1 175 LYS 175 172 172 LYS LYS A . n A 1 176 ALA 176 173 173 ALA ALA A . n A 1 177 PHE 177 174 174 PHE PHE A . n A 1 178 ALA 178 175 175 ALA ALA A . n A 1 179 ASP 179 176 176 ASP ASP A . n A 1 180 ALA 180 177 177 ALA ALA A . n A 1 181 ASP 181 178 178 ASP ASP A . n A 1 182 CYS 182 179 179 CYS CYS A . n A 1 183 PHE 183 180 180 PHE PHE A . n A 1 184 PRO 184 181 181 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SRT 1 182 41 SRT TAR A . C 3 HOH 1 183 1 HOH HOH A . C 3 HOH 2 184 2 HOH HOH A . C 3 HOH 3 185 3 HOH HOH A . C 3 HOH 4 186 4 HOH HOH A . C 3 HOH 5 187 5 HOH HOH A . C 3 HOH 6 188 6 HOH HOH A . C 3 HOH 7 189 7 HOH HOH A . C 3 HOH 8 190 8 HOH HOH A . C 3 HOH 9 191 9 HOH HOH A . C 3 HOH 10 192 10 HOH HOH A . C 3 HOH 11 193 11 HOH HOH A . C 3 HOH 12 194 12 HOH HOH A . C 3 HOH 13 195 13 HOH HOH A . C 3 HOH 14 196 14 HOH HOH A . C 3 HOH 15 197 15 HOH HOH A . C 3 HOH 16 198 16 HOH HOH A . C 3 HOH 17 199 17 HOH HOH A . C 3 HOH 18 200 18 HOH HOH A . C 3 HOH 19 201 19 HOH HOH A . C 3 HOH 20 202 20 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_454 y-1/2,-x+1/2,z-1/4 0.0000000000 1.0000000000 0.0000000000 -28.9165000000 -1.0000000000 0.0000000000 0.0000000000 28.9165000000 0.0000000000 0.0000000000 1.0000000000 -40.4050000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-03-02 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 4.4820 _pdbx_refine_tls.origin_y 41.2220 _pdbx_refine_tls.origin_z 28.7440 _pdbx_refine_tls.T[1][1] 0.0107 _pdbx_refine_tls.T[2][2] 0.0345 _pdbx_refine_tls.T[3][3] 0.0763 _pdbx_refine_tls.T[1][2] 0.0008 _pdbx_refine_tls.T[1][3] -0.0251 _pdbx_refine_tls.T[2][3] 0.0092 _pdbx_refine_tls.L[1][1] 1.2795 _pdbx_refine_tls.L[2][2] 2.0127 _pdbx_refine_tls.L[3][3] 6.9689 _pdbx_refine_tls.L[1][2] -0.1038 _pdbx_refine_tls.L[1][3] 0.1575 _pdbx_refine_tls.L[2][3] 1.7977 _pdbx_refine_tls.S[1][1] 0.1131 _pdbx_refine_tls.S[1][2] 0.0928 _pdbx_refine_tls.S[1][3] -0.0378 _pdbx_refine_tls.S[2][1] -0.0978 _pdbx_refine_tls.S[2][2] -0.1822 _pdbx_refine_tls.S[2][3] 0.1435 _pdbx_refine_tls.S[3][1] 0.2245 _pdbx_refine_tls.S[3][2] -0.6409 _pdbx_refine_tls.S[3][3] 0.0691 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 4 _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_label_asym_id C _pdbx_refine_tls_group.end_label_seq_id 2 _pdbx_refine_tls_group.end_auth_seq_id 184 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.0 ? 1 MOSFLM 'data reduction' . ? 2 CCP4 'data scaling' '(SCALA)' ? 3 AMoRE phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 188 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 189 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.38 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 17 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 PHE _pdbx_validate_symm_contact.auth_seq_id_2 174 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 2.14 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A MET -1 ? ? CA A MET -1 ? ? C A MET -1 ? ? 127.69 111.00 16.69 2.70 N 2 1 N A GLY 60 ? ? CA A GLY 60 ? ? C A GLY 60 ? ? 128.48 113.10 15.38 2.50 N 3 1 CA A LEU 130 ? ? CB A LEU 130 ? ? CG A LEU 130 ? ? 131.35 115.30 16.05 2.30 N 4 1 CB A ASP 135 ? ? CG A ASP 135 ? ? OD2 A ASP 135 ? ? 125.17 118.30 6.87 0.90 N 5 1 CB A ASP 176 ? ? CG A ASP 176 ? ? OD2 A ASP 176 ? ? 124.07 118.30 5.77 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A -1 ? ? -139.51 -122.00 2 1 ALA A 0 ? ? 132.77 31.17 3 1 MET A 1 ? ? -172.40 136.59 4 1 ASP A 21 ? ? -144.96 -157.77 5 1 LEU A 61 ? ? 61.67 62.99 6 1 LYS A 107 ? ? 57.73 19.47 7 1 TRP A 156 ? ? -67.50 97.70 8 1 PRO A 157 ? ? -32.04 0.42 9 1 GLN A 159 ? ? -173.07 72.96 10 1 ASP A 160 ? ? 162.95 150.58 11 1 PRO A 162 ? ? -35.46 134.18 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C2 ? A SRT 182 ? 'WRONG HAND' . 2 1 C3 ? A SRT 182 ? 'WRONG HAND' . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 SRT O1 O N N 304 SRT O11 O N N 305 SRT C1 C N N 306 SRT C2 C N S 307 SRT O2 O N N 308 SRT C3 C N R 309 SRT O3 O N N 310 SRT C4 C N N 311 SRT O4 O N N 312 SRT O41 O N N 313 SRT H1 H N N 314 SRT H2 H N N 315 SRT HA H N N 316 SRT H3 H N N 317 SRT HB H N N 318 SRT H41 H N N 319 THR N N N N 320 THR CA C N S 321 THR C C N N 322 THR O O N N 323 THR CB C N R 324 THR OG1 O N N 325 THR CG2 C N N 326 THR OXT O N N 327 THR H H N N 328 THR H2 H N N 329 THR HA H N N 330 THR HB H N N 331 THR HG1 H N N 332 THR HG21 H N N 333 THR HG22 H N N 334 THR HG23 H N N 335 THR HXT H N N 336 TRP N N N N 337 TRP CA C N S 338 TRP C C N N 339 TRP O O N N 340 TRP CB C N N 341 TRP CG C Y N 342 TRP CD1 C Y N 343 TRP CD2 C Y N 344 TRP NE1 N Y N 345 TRP CE2 C Y N 346 TRP CE3 C Y N 347 TRP CZ2 C Y N 348 TRP CZ3 C Y N 349 TRP CH2 C Y N 350 TRP OXT O N N 351 TRP H H N N 352 TRP H2 H N N 353 TRP HA H N N 354 TRP HB2 H N N 355 TRP HB3 H N N 356 TRP HD1 H N N 357 TRP HE1 H N N 358 TRP HE3 H N N 359 TRP HZ2 H N N 360 TRP HZ3 H N N 361 TRP HH2 H N N 362 TRP HXT H N N 363 TYR N N N N 364 TYR CA C N S 365 TYR C C N N 366 TYR O O N N 367 TYR CB C N N 368 TYR CG C Y N 369 TYR CD1 C Y N 370 TYR CD2 C Y N 371 TYR CE1 C Y N 372 TYR CE2 C Y N 373 TYR CZ C Y N 374 TYR OH O N N 375 TYR OXT O N N 376 TYR H H N N 377 TYR H2 H N N 378 TYR HA H N N 379 TYR HB2 H N N 380 TYR HB3 H N N 381 TYR HD1 H N N 382 TYR HD2 H N N 383 TYR HE1 H N N 384 TYR HE2 H N N 385 TYR HH H N N 386 TYR HXT H N N 387 VAL N N N N 388 VAL CA C N S 389 VAL C C N N 390 VAL O O N N 391 VAL CB C N N 392 VAL CG1 C N N 393 VAL CG2 C N N 394 VAL OXT O N N 395 VAL H H N N 396 VAL H2 H N N 397 VAL HA H N N 398 VAL HB H N N 399 VAL HG11 H N N 400 VAL HG12 H N N 401 VAL HG13 H N N 402 VAL HG21 H N N 403 VAL HG22 H N N 404 VAL HG23 H N N 405 VAL HXT H N N 406 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 SRT O1 C1 sing N N 290 SRT O1 H1 sing N N 291 SRT O11 C1 doub N N 292 SRT C1 C2 sing N N 293 SRT C2 O2 sing N N 294 SRT C2 C3 sing N N 295 SRT C2 H2 sing N N 296 SRT O2 HA sing N N 297 SRT C3 O3 sing N N 298 SRT C3 C4 sing N N 299 SRT C3 H3 sing N N 300 SRT O3 HB sing N N 301 SRT C4 O4 doub N N 302 SRT C4 O41 sing N N 303 SRT O41 H41 sing N N 304 THR N CA sing N N 305 THR N H sing N N 306 THR N H2 sing N N 307 THR CA C sing N N 308 THR CA CB sing N N 309 THR CA HA sing N N 310 THR C O doub N N 311 THR C OXT sing N N 312 THR CB OG1 sing N N 313 THR CB CG2 sing N N 314 THR CB HB sing N N 315 THR OG1 HG1 sing N N 316 THR CG2 HG21 sing N N 317 THR CG2 HG22 sing N N 318 THR CG2 HG23 sing N N 319 THR OXT HXT sing N N 320 TRP N CA sing N N 321 TRP N H sing N N 322 TRP N H2 sing N N 323 TRP CA C sing N N 324 TRP CA CB sing N N 325 TRP CA HA sing N N 326 TRP C O doub N N 327 TRP C OXT sing N N 328 TRP CB CG sing N N 329 TRP CB HB2 sing N N 330 TRP CB HB3 sing N N 331 TRP CG CD1 doub Y N 332 TRP CG CD2 sing Y N 333 TRP CD1 NE1 sing Y N 334 TRP CD1 HD1 sing N N 335 TRP CD2 CE2 doub Y N 336 TRP CD2 CE3 sing Y N 337 TRP NE1 CE2 sing Y N 338 TRP NE1 HE1 sing N N 339 TRP CE2 CZ2 sing Y N 340 TRP CE3 CZ3 doub Y N 341 TRP CE3 HE3 sing N N 342 TRP CZ2 CH2 doub Y N 343 TRP CZ2 HZ2 sing N N 344 TRP CZ3 CH2 sing Y N 345 TRP CZ3 HZ3 sing N N 346 TRP CH2 HH2 sing N N 347 TRP OXT HXT sing N N 348 TYR N CA sing N N 349 TYR N H sing N N 350 TYR N H2 sing N N 351 TYR CA C sing N N 352 TYR CA CB sing N N 353 TYR CA HA sing N N 354 TYR C O doub N N 355 TYR C OXT sing N N 356 TYR CB CG sing N N 357 TYR CB HB2 sing N N 358 TYR CB HB3 sing N N 359 TYR CG CD1 doub Y N 360 TYR CG CD2 sing Y N 361 TYR CD1 CE1 sing Y N 362 TYR CD1 HD1 sing N N 363 TYR CD2 CE2 doub Y N 364 TYR CD2 HD2 sing N N 365 TYR CE1 CZ doub Y N 366 TYR CE1 HE1 sing N N 367 TYR CE2 CZ sing Y N 368 TYR CE2 HE2 sing N N 369 TYR CZ OH sing N N 370 TYR OH HH sing N N 371 TYR OXT HXT sing N N 372 VAL N CA sing N N 373 VAL N H sing N N 374 VAL N H2 sing N N 375 VAL CA C sing N N 376 VAL CA CB sing N N 377 VAL CA HA sing N N 378 VAL C O doub N N 379 VAL C OXT sing N N 380 VAL CB CG1 sing N N 381 VAL CB CG2 sing N N 382 VAL CB HB sing N N 383 VAL CG1 HG11 sing N N 384 VAL CG1 HG12 sing N N 385 VAL CG1 HG13 sing N N 386 VAL CG2 HG21 sing N N 387 VAL CG2 HG22 sing N N 388 VAL CG2 HG23 sing N N 389 VAL OXT HXT sing N N 390 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'S,R MESO-TARTARIC ACID' SRT 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DZR _pdbx_initial_refinement_model.details 'pdb entry 1DZR' #