HEADER    IMMUNE SYSTEM                           11-DEC-03   1RU9              
TITLE     CRYSTAL STRUCTURE (A) OF U.V.-IRRADIATED CATIONIC CYCLIZATION ANTIBODY
TITLE    2 4C6 FAB AT PH 4.6 WITH A DATA SET COLLECTED IN-HOUSE.                
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: IMMUNOGLOBULIN IGG2A, LIGHT CHAIN;                         
COMPND   3 CHAIN: L;                                                            
COMPND   4 FRAGMENT: FAB;                                                       
COMPND   5 MOL_ID: 2;                                                           
COMPND   6 MOLECULE: IMMUNOGLOBULIN IGG2A, HEAVY CHAIN;                         
COMPND   7 CHAIN: H;                                                            
COMPND   8 FRAGMENT: FAB                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   3 ORGANISM_COMMON: HOUSE MOUSE;                                        
SOURCE   4 ORGANISM_TAXID: 10090;                                               
SOURCE   5 STRAIN: 129G1X+;                                                     
SOURCE   6 MOL_ID: 2;                                                           
SOURCE   7 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   8 ORGANISM_COMMON: HOUSE MOUSE;                                        
SOURCE   9 ORGANISM_TAXID: 10090;                                               
SOURCE  10 STRAIN: 129G1X+                                                      
KEYWDS    IMMUNOGLOBULIN, CATALYTIC ANTIBODY, WATER OXIDATION, AMINO ACID       
KEYWDS   2 MODIFICATION, IMMUNE SYSTEM                                          
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    X.ZHU,P.WENTWORTH JR.,A.D.WENTWORTH,A.ESCHENMOSER,R.A.LERNER,         
AUTHOR   2 I.A.WILSON                                                           
REVDAT   5   23-AUG-23 1RU9    1       REMARK LINK                              
REVDAT   4   05-JUN-13 1RU9    1       HETNAM                                   
REVDAT   3   13-JUL-11 1RU9    1       VERSN                                    
REVDAT   2   24-FEB-09 1RU9    1       VERSN                                    
REVDAT   1   02-MAR-04 1RU9    0                                                
JRNL        AUTH   X.ZHU,P.WENTWORTH JR.,A.D.WENTWORTH,A.ESCHENMOSER,           
JRNL        AUTH 2 R.A.LERNER,I.A.WILSON                                        
JRNL        TITL   PROBING THE ANTIBODY-CATALYZED WATER-OXIDATION PATHWAY AT    
JRNL        TITL 2 ATOMIC RESOLUTION.                                           
JRNL        REF    PROC.NATL.ACAD.SCI.USA        V. 110  2247 2004              
JRNL        REFN                   ISSN 0027-8424                               
JRNL        PMID   14982995                                                     
JRNL        DOI    10.1073/PNAS.0307311101                                      
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   X.ZHU,A.HEINE,F.MONNAT,K.N.HOUK,K.D.JANDA,I.A.WILSON         
REMARK   1  TITL   STRUCTURAL BASIS FOR ANTIBODY CATALYSIS OF A CATIONIC        
REMARK   1  TITL 2 CYCLIZATION REACTION                                         
REMARK   1  REF    J.MOL.BIOL.                   V. 329    69 2003              
REMARK   1  REFN                   ISSN 0022-2836                               
REMARK   1  PMID   12742019                                                     
REMARK   1  DOI    10.1016/S0022-2836(03)00406-6                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.50 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 50.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : NULL                           
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : NULL                           
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 87.1                           
REMARK   3   NUMBER OF REFLECTIONS             : 17609                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : FREE R                          
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.192                           
REMARK   3   FREE R VALUE                     : 0.247                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : NULL                            
REMARK   3   FREE R VALUE TEST SET COUNT      : 1037                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : NULL                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : NULL                         
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : NULL                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : NULL                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : NULL                         
REMARK   3   BIN FREE R VALUE                    : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : NULL                         
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : NULL                         
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3382                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 43                                      
REMARK   3   SOLVENT ATOMS            : 242                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : NULL                            
REMARK   3   ESD FROM SIGMAA              (A) : NULL                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : NULL                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : NULL                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : NULL                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.012                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.600                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 27.50                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 0.860                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : NULL                                      
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : NULL                                                 
REMARK   3   KSOL        : NULL                                                 
REMARK   3   BSOL        : NULL                                                 
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1RU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-04.                  
REMARK 100 THE DEPOSITION ID IS D_1000021044.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 28-MAR-02                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 4.6                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU FR-D                        
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : MARRESEARCH                        
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 18691                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.500                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -3.000                             
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 92.0                               
REMARK 200  DATA REDUNDANCY                : 3.600                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.09100                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 12.3000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.54                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 90.0                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.44700                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.000                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: PDB ENTRY 1NCW                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 56.50                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, PH 4.6, 0.2 M       
REMARK 280  AMMONIUM ACETATE, 15% (W/V) PEG 4000, VAPOR DIFFUSION, SITTING      
REMARK 280  DROP, TEMPERATURE 295K                                              
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -Y+1/2,X+1/2,Z+1/4                                      
REMARK 290       4555   Y+1/2,-X+1/2,Z+3/4                                      
REMARK 290       5555   -X+1/2,Y+1/2,-Z+1/4                                     
REMARK 290       6555   X+1/2,-Y+1/2,-Z+3/4                                     
REMARK 290       7555   Y,X,-Z                                                  
REMARK 290       8555   -Y,-X,-Z+1/2                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000      133.02050            
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000       32.03650            
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000       32.03650            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       66.51025            
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000       32.03650            
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000       32.03650            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000      199.53075            
REMARK 290   SMTRY1   5 -1.000000  0.000000  0.000000       32.03650            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       32.03650            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       66.51025            
REMARK 290   SMTRY1   6  1.000000  0.000000  0.000000       32.03650            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       32.03650            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000      199.53075            
REMARK 290   SMTRY1   7  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   7  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000      133.02050            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 5460 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 19910 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    PRO L  44      150.28    -46.67                                   
REMARK 500    LEU L  47      -65.81   -141.83                                   
REMARK 500    GLN H  16     -155.36    -97.06                                   
REMARK 500    TYR H  27      140.10   -177.85                                   
REMARK 500    ASP H  32      -41.84     49.99                                   
REMARK 500    PRO H  41      -35.27    -35.18                                   
REMARK 500    ASN H  43       22.38     94.94                                   
REMARK 500    SER H  58      131.61   -172.76                                   
REMARK 500    LYS H  64      114.80    -18.95                                   
REMARK 500    SER H  65      -19.57     79.08                                   
REMARK 500    PRO H 151     -165.62   -112.53                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT H 611                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ H 601                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 621                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 622                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 623                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 624                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 625                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1NCW   RELATED DB: PDB                                   
REMARK 900 SAME NATIVE PROTEIN                                                  
REMARK 900 RELATED ID: 1ND0   RELATED DB: PDB                                   
REMARK 900 SAME NATIVE PROTEIN COMPLEX WITH TRANSITION STATE ANALOG             
REMARK 900 RELATED ID: 1RUA   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF U.V.-IRRADIATED CATIONIC CYCLIZATION ANTIBODY   
REMARK 900 4C6 FAB AT PH 4.6 WITH A DATA SET COLLECTED AT SSRL BEAMLINE 11-1.   
REMARK 900 RELATED ID: 1RUK   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF NATIVE CATIONIC CYCLIZATION ANTIBODY 4C6 FAB    
REMARK 900 AT PH 4.6 WITH A DATA SET COLLECTED AT SSRL BEAMLINE 9-1             
REMARK 900 RELATED ID: 1RUL   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF U.V.-IRRADIATED CATIONIC CYCLIZATION ANTIBODY   
REMARK 900 4C6 FAB AT PH 5.6 WITH A DATA SET COLLECTED AT SSRL BEAMLINE 11-1.   
REMARK 900 RELATED ID: 1RUM   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF H2O2-SOAKED CATIONIC CYCLIZATION ANTIBODY 4C6   
REMARK 900 FAB AT PH 8.5 WITH A DATA SET COLLECTED AT SSRL BEAMLINE 9-1.        
REMARK 900 RELATED ID: 1RUP   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF NATIVE CATIONIC CYCLIZATION ANTIBODY 4C6 FAB    
REMARK 900 AT PH 8.5 WITH A DATA SET COLLECTED AT APS BEAMLINE 19-ID            
REMARK 999                                                                      
REMARK 999 SEQUENCE                                                             
REMARK 999 NO SUITABLE SEQUENCE DATA BASE REFERENCE                             
REMARK 999 WAS AVAILABLE AT THE TIME OF PROCESSING                              
REMARK 999 THIS FILE.                                                           
DBREF  1RU9 H  115   231  UNP    P01865   GCAM_MOUSE       1    102             
DBREF  1RU9 L    1   214  UNP    Q8K0F8   Q8K0F8_MOUSE    21    239             
SEQRES   1 L  219  ASP VAL VAL MET THR GLN SER PRO LYS THR ILE SER VAL          
SEQRES   2 L  219  THR ILE GLY GLN PRO ALA SER ILE SER CYS LYS SER SER          
SEQRES   3 L  219  GLN ARG LEU LEU ASN SER ASN GLY LYS THR PHE LEU ASN          
SEQRES   4 L  219  TRP LEU LEU GLN ARG PRO GLY GLN SER PRO LYS ARG LEU          
SEQRES   5 L  219  ILE TYR LEU GLY THR LYS LEU ASP SER GLY VAL PRO ASP          
SEQRES   6 L  219  ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR LEU          
SEQRES   7 L  219  LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR          
SEQRES   8 L  219  TYR CYS TRP GLN GLY THR HIS PHE PRO TYR THR PHE GLY          
SEQRES   9 L  219  GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA          
SEQRES  10 L  219  PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU          
SEQRES  11 L  219  THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN          
SEQRES  12 L  219  PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP          
SEQRES  13 L  219  GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER 4HT THR          
SEQRES  14 L  219  ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER          
SEQRES  15 L  219  THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN          
SEQRES  16 L  219  SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER          
SEQRES  17 L  219  PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS                  
SEQRES   1 H  222  ARG VAL GLN LEU GLN GHG SER GLY PRO GLY LEU VAL LYS          
SEQRES   2 H  222  PRO SER GLN SER LEU SER LEU THR CYS THR VAL THR GLY          
SEQRES   3 H  222  TYR SER ILE THR SER ASP PHE ALA TRP ASN TRP ILE ARG          
SEQRES   4 H  222  GLN PHE PRO GLY ASN LYS LEU GLU TRP MET GLY TYR ILE          
SEQRES   5 H  222  ASN TYR SER GLY PHE THR SER HIS ASN PRO SER LEU LYS          
SEQRES   6 H  222  SER ARG ILE SER ILE THR ARG ASP THR SER LYS ASN GLN          
SEQRES   7 H  222  PHE PHE LEU GLN LEU ASN SER VAL THR THR GLU ASP THR          
SEQRES   8 H  222  ALA THR TYR TYR CYS ALA GLY LEU LEU TRP TYR ASP GLY          
SEQRES   9 H  222  GLY ALA GLY SER TRP GLY GLN GLY THR LEU VAL THR VAL          
SEQRES  10 H  222  SER ALA ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU          
SEQRES  11 H  222  ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR          
SEQRES  12 H  222  LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL          
SEQRES  13 H  222  THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL          
SEQRES  14 H  222  HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR          
SEQRES  15 H  222  LEU SER SER SER VAL THR VAL THR SER SER THR TRP PRO          
SEQRES  16 H  222  SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER          
SEQRES  17 H  222  SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG GLY PRO          
SEQRES  18 H  222  THR                                                          
MODRES 1RU9 4HT L  163  TRP  4-HYDROXYTRYPTOPHAN                                
MODRES 1RU9 GHG H    6  GLN                                                     
HET    4HT  L 163      15                                                       
HET    GHG  H   6      10                                                       
HET    GOL  L 622       6                                                       
HET    ACT  H 611       4                                                       
HET    BEZ  H 601       9                                                       
HET    GOL  H 621       6                                                       
HET    GOL  H 623       6                                                       
HET    GOL  H 624       6                                                       
HET    GOL  H 625       6                                                       
HETNAM     4HT 4-HYDROXYTRYPTOPHAN                                              
HETNAM     GHG (2S,4S)-2,5-DIAMINO-4-HYDROXY-5-OXOPENTANOIC ACID (NON-          
HETNAM   2 GHG  PREFERRED NAME)                                                 
HETNAM     GOL GLYCEROL                                                         
HETNAM     ACT ACETATE ION                                                      
HETNAM     BEZ BENZOIC ACID                                                     
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   1  4HT    C11 H12 N2 O3                                                
FORMUL   2  GHG    C5 H10 N2 O4                                                 
FORMUL   3  GOL    5(C3 H8 O3)                                                  
FORMUL   4  ACT    C2 H3 O2 1-                                                  
FORMUL   5  BEZ    C7 H6 O2                                                     
FORMUL  10  HOH   *242(H2 O)                                                    
HELIX    1   1 GLU L   79  LEU L   83  5                                   5    
HELIX    2   2 SER L  121  THR L  126  1                                   6    
HELIX    3   3 LYS L  183  GLU L  187  1                                   5    
HELIX    4   4 PRO H   61  LYS H   64  5                                   4    
HELIX    5   5 THR H   73  LYS H   75  5                                   3    
HELIX    6   6 THR H   83  THR H   87  5                                   5    
HELIX    7   7 VAL H  127  THR H  134  5                                   6    
HELIX    8   8 SER H  163  SER H  165  5                                   3    
HELIX    9   9 SER H  196  TRP H  199  5                                   3    
HELIX   10  10 PRO H  213  SER H  216  5                                   4    
SHEET    1   A 4 MET L   4  SER L   7  0                                        
SHEET    2   A 4 ALA L  19  SER L  25 -1  O  LYS L  24   N  THR L   5           
SHEET    3   A 4 ASP L  70  ILE L  75 -1  O  ILE L  75   N  ALA L  19           
SHEET    4   A 4 PHE L  62  SER L  67 -1  N  THR L  63   O  LYS L  74           
SHEET    1   B 6 THR L  10  THR L  14  0                                        
SHEET    2   B 6 THR L 102  LYS L 107  1  O  GLU L 105   N  ILE L  11           
SHEET    3   B 6 GLY L  84  GLN L  90 -1  N  TYR L  86   O  THR L 102           
SHEET    4   B 6 LEU L  33  GLN L  38 -1  N  LEU L  36   O  TYR L  87           
SHEET    5   B 6 LYS L  45  TYR L  49 -1  O  ILE L  48   N  TRP L  35           
SHEET    6   B 6 LYS L  53  LEU L  54 -1  O  LYS L  53   N  TYR L  49           
SHEET    1   C 4 THR L  10  THR L  14  0                                        
SHEET    2   C 4 THR L 102  LYS L 107  1  O  GLU L 105   N  ILE L  11           
SHEET    3   C 4 GLY L  84  GLN L  90 -1  N  TYR L  86   O  THR L 102           
SHEET    4   C 4 THR L  97  PHE L  98 -1  O  THR L  97   N  GLN L  90           
SHEET    1   D 4 THR L 114  PHE L 118  0                                        
SHEET    2   D 4 GLY L 129  PHE L 139 -1  O  VAL L 133   N  PHE L 118           
SHEET    3   D 4 TYR L 173  THR L 182 -1  O  MET L 175   N  LEU L 136           
SHEET    4   D 4 VAL L 159  4HT L 163 -1  N  SER L 162   O  SER L 176           
SHEET    1   E 4 SER L 153  ARG L 155  0                                        
SHEET    2   E 4 ASN L 145  ILE L 150 -1  N  ILE L 150   O  SER L 153           
SHEET    3   E 4 SER L 191  THR L 197 -1  O  GLU L 195   N  LYS L 147           
SHEET    4   E 4 ILE L 205  ASN L 210 -1  O  ILE L 205   N  ALA L 196           
SHEET    1   F 4 GLN H   3  SER H   7  0                                        
SHEET    2   F 4 LEU H  18  THR H  25 -1  O  THR H  21   N  SER H   7           
SHEET    3   F 4 GLN H  77  LEU H  82 -1  O  LEU H  82   N  LEU H  18           
SHEET    4   F 4 ILE H  67  ASP H  72 -1  N  THR H  70   O  PHE H  79           
SHEET    1   G 6 LEU H  11  VAL H  12  0                                        
SHEET    2   G 6 THR H 107  VAL H 111  1  O  THR H 110   N  VAL H  12           
SHEET    3   G 6 ALA H  88  LEU H  96 -1  N  TYR H  90   O  THR H 107           
SHEET    4   G 6 PHE H  33  GLN H  39 -1  N  ILE H  37   O  TYR H  91           
SHEET    5   G 6 LEU H  45  ASN H  52 -1  O  MET H  48   N  TRP H  36           
SHEET    6   G 6 THR H  57  HIS H  59 -1  O  SER H  58   N  TYR H  50           
SHEET    1   H 4 LEU H  11  VAL H  12  0                                        
SHEET    2   H 4 THR H 107  VAL H 111  1  O  THR H 110   N  VAL H  12           
SHEET    3   H 4 ALA H  88  LEU H  96 -1  N  TYR H  90   O  THR H 107           
SHEET    4   H 4 SER H 102  TRP H 103 -1  O  SER H 102   N  GLY H  94           
SHEET    1   I 4 SER H 120  LEU H 124  0                                        
SHEET    2   I 4 SER H 137  TYR H 147 -1  O  LEU H 143   N  TYR H 122           
SHEET    3   I 4 LEU H 184  THR H 194 -1  O  TYR H 185   N  TYR H 147           
SHEET    4   I 4 VAL H 171  THR H 173 -1  N  HIS H 172   O  SER H 190           
SHEET    1   J 4 SER H 120  LEU H 124  0                                        
SHEET    2   J 4 SER H 137  TYR H 147 -1  O  LEU H 143   N  TYR H 122           
SHEET    3   J 4 LEU H 184  THR H 194 -1  O  TYR H 185   N  TYR H 147           
SHEET    4   J 4 VAL H 177  GLN H 179 -1  N  VAL H 177   O  THR H 186           
SHEET    1   K 3 THR H 153  TRP H 157  0                                        
SHEET    2   K 3 THR H 206  HIS H 212 -1  O  ASN H 209   N  THR H 156           
SHEET    3   K 3 THR H 217  LYS H 222 -1  O  LYS H 221   N  CYS H 208           
SSBOND   1 CYS L   23    CYS L   88                          1555   1555  2.03  
SSBOND   2 CYS L  134    CYS L  194                          1555   1555  2.03  
SSBOND   3 CYS L  214    CYS H  128                          1555   1555  2.03  
SSBOND   4 CYS H   22    CYS H   92                          1555   1555  2.03  
SSBOND   5 CYS H  142    CYS H  208                          1555   1555  2.03  
LINK         C   SER L 162                 N   4HT L 163     1555   1555  1.32  
LINK         C   4HT L 163                 N   THR L 164     1555   1555  1.32  
LINK         C   GLN H   5                 N   GHG H   6     1555   1555  1.33  
LINK         C   GHG H   6                 N   SER H   7     1555   1555  1.33  
CISPEP   1 SER L    7    PRO L    8          0         0.12                     
CISPEP   2 PHE L   94    PRO L   95          0        -0.08                     
CISPEP   3 TYR L  140    PRO L  141          0        -1.09                     
CISPEP   4 PHE H  148    PRO H  149          0         0.01                     
CISPEP   5 GLU H  150    PRO H  151          0        -0.47                     
CISPEP   6 TRP H  199    PRO H  200          0         0.70                     
SITE     1 AC1  5 LEU H  95  TRP H 103  HOH H 712  ASN L  34                    
SITE     2 AC1  5 LEU L  36                                                     
SITE     1 AC2  9 ALA H  34  ASN H  35A TYR H  50  LEU H  95                    
SITE     2 AC2  9 LEU H  96  PRO H 230  PHE L  32  TRP L  89                    
SITE     3 AC2  9 GLY L  91                                                     
SITE     1 AC3  5 LYS H  44  LEU H  45  THR L  97  PHE L  98                    
SITE     2 AC3  5 HOH L 624                                                     
SITE     1 AC4  6 PHE H 174  PRO H 175  THR H 186  SER H 188                    
SITE     2 AC4  6 SER L 176  THR L 178                                          
SITE     1 AC5  4 ARG H  71  ASP H  72  THR H  73  LEU L  54                    
SITE     1 AC6  8 VAL H  12  GLN H  16  SER H  17  ASP H  32                    
SITE     2 AC6  8 TYR H  53  TRP H  97  HOH H 627  HOH H 644                    
SITE     1 AC7  7 VAL H 121  TYR H 122  SER H 215  LYS H 221                    
SITE     2 AC7  7 HOH H 666  HOH H 727  GLU L 123                               
CRYST1   64.073   64.073  266.041  90.00  90.00  90.00 P 41 21 2     8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.015607  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.015607  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.003759        0.00000