HEADER ENDONUCLEASE 24-FEB-92 1RVE TITLE THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS COMPLEXES WITH TITLE 2 COGNATE AND NON-COGNATE DNA FRAGMENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE ECOR V; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.21.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS ENDONUCLEASE EXPDTA X-RAY DIFFRACTION AUTHOR F.K.WINKLER REVDAT 6 14-FEB-24 1RVE 1 REMARK REVDAT 5 14-AUG-19 1RVE 1 REMARK REVDAT 4 17-JUL-19 1RVE 1 REMARK REVDAT 3 24-FEB-09 1RVE 1 VERSN REVDAT 2 01-APR-03 1RVE 1 JRNL REVDAT 1 31-JAN-94 1RVE 0 JRNL AUTH F.K.WINKLER,D.W.BANNER,C.OEFNER,D.TSERNOGLOU,R.S.BROWN, JRNL AUTH 2 S.P.HEATHMAN,R.K.BRYAN,P.D.MARTIN,K.PETRATOS,K.S.WILSON JRNL TITL THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS JRNL TITL 2 COMPLEXES WITH COGNATE AND NON-COGNATE DNA FRAGMENTS. JRNL REF EMBO J. V. 12 1781 1993 JRNL REFN ISSN 0261-4189 JRNL PMID 8491171 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.K.WINKLER REMARK 1 TITL STRUCTURE AND FUNCTION OF RESTRICTION ENDONUCLEASES REMARK 1 REF CURR.OPIN.STRUCT.BIOL. V. 2 93 1992 REMARK 1 REFN ISSN 0959-440X REMARK 1 REFERENCE 2 REMARK 1 AUTH F.K.WINKLER,A.D'ARCY,H.BLOECKER,R.FRANK,J.H.VAN BOOM REMARK 1 TITL CRYSTALLIZATION OF COMPLEXES OF ECORV ENDONUCLEASE WITH REMARK 1 TITL 2 COGNATE AND NON-COGNATE DNA FRAGMENTS REMARK 1 REF J.MOL.BIOL. V. 217 235 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.D'ARCY,R.S.BROWN,M.ZABEAU,R.W.VAN RESANDT,F.K.WINKLER REMARK 1 TITL PURIFICATION AND CRYSTALLIZATION OF THE ECORV RESTRICTION REMARK 1 TITL 2 ENDONUCLEASE REMARK 1 REF J.BIOL.CHEM. V. 260 1987 1985 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 15963 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : NULL ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE CHAIN SEGMENTS LISTED BELOW APPEAR TO BE REMARK 3 DISOREDERED AND ARE ENTERED WITH ZERO OCCUPANCIES. THE REMARK 3 CORRESPONDING B FACTORS ARE MEANINGLESS. THE COORDINATES REMARK 3 OF THE ATOMS OF THESE SEGMENTS HAVE BEEN PRODUCED THROUGH REMARK 3 THE INITIAL MOLECULAR DYNAMICS RUNS STARTING WITH ARBITRARY REMARK 3 CONFORMATIONS AND UNIT OCCUPANCIES. THE DENSITY IN THESE REMARK 3 REGIONS IS MOSTLY WEAK AND FRAGMENTED. THE RESIDUES HAVE REMARK 3 BEEN LEFT IN THIS COORDINATE FILE JUST TO DELINEATE THE REMARK 3 APPROXIMATE PATH OF THE CHAIN IN THESE REGIONS. THEY WERE REMARK 3 INCLUDED WITH ZERO OCCUPANCIES IN TNT REFINEMENT TO REMARK 3 MAINTAIN REASONABLE STEREOCHEMISTRY. REMARK 3 A 13 TO A 17 B 13 TO B 19 REMARK 3 A 142 TO A 148 B 142 TO B 148 REMARK 3 A 183 TO A 187 B 183 TO B 187 REMARK 3 A 221 TO A 228 B 221 TO B 228 REMARK 3 REMARK 3 THE FOLLOWING PROTEIN SIDE CHAINS HAVE NO OR POORLY DEFINED REMARK 3 DENSITY (THEY WERE INCLUDED IN THE REFINEMENT AND ARE REMARK 3 ENTERED WITH UNIT OCCUPANCIES): REMARK 3 A CHAIN: GLN 68, GLN 69, ASN 70, LYS 245 REMARK 3 B CHAIN: LYS 161 REMARK 4 REMARK 4 1RVE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.10000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.10000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP A 13 REMARK 475 GLU A 14 REMARK 475 ASN A 15 REMARK 475 GLN A 16 REMARK 475 LYS A 17 REMARK 475 ALA A 142 REMARK 475 THR A 143 REMARK 475 ARG A 144 REMARK 475 LYS A 145 REMARK 475 SER A 146 REMARK 475 SER A 147 REMARK 475 LEU A 148 REMARK 475 SER A 183 REMARK 475 GLY A 184 REMARK 475 ASN A 185 REMARK 475 THR A 186 REMARK 475 THR A 187 REMARK 475 ARG A 221 REMARK 475 THR A 222 REMARK 475 SER A 223 REMARK 475 GLN A 224 REMARK 475 LEU A 225 REMARK 475 ARG A 226 REMARK 475 ASN A 227 REMARK 475 ASP A 228 REMARK 475 ASP B 13 REMARK 475 GLU B 14 REMARK 475 ASN B 15 REMARK 475 GLN B 16 REMARK 475 LYS B 17 REMARK 475 TYR B 18 REMARK 475 ASP B 19 REMARK 475 ALA B 142 REMARK 475 THR B 143 REMARK 475 ARG B 144 REMARK 475 LYS B 145 REMARK 475 SER B 146 REMARK 475 SER B 147 REMARK 475 LEU B 148 REMARK 475 SER B 183 REMARK 475 GLY B 184 REMARK 475 ASN B 185 REMARK 475 THR B 186 REMARK 475 ARG B 221 REMARK 475 THR B 222 REMARK 475 SER B 223 REMARK 475 GLN B 224 REMARK 475 LEU B 225 REMARK 475 ARG B 226 REMARK 475 ASN B 227 REMARK 475 ASP B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP B 172 NH2 ARG B 242 4445 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 27 CD GLU A 27 OE2 0.066 REMARK 500 GLU A 64 CD GLU A 64 OE2 0.076 REMARK 500 GLU A 99 CD GLU A 99 OE1 0.073 REMARK 500 GLU A 158 CD GLU A 158 OE2 0.074 REMARK 500 GLU A 220 CD GLU A 220 OE2 0.069 REMARK 500 GLU B 57 CD GLU B 57 OE2 0.079 REMARK 500 GLU B 64 CD GLU B 64 OE1 0.070 REMARK 500 GLU B 82 CD GLU B 82 OE2 0.069 REMARK 500 GLU B 158 CD GLU B 158 OE1 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 6 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 13 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 19 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 90 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 126 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 126 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 172 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 172 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 198 CB - CG - OD1 ANGL. DEV. = -8.3 DEGREES REMARK 500 ASP A 198 CB - CG - OD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 207 CB - CG - OD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 210 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 228 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 244 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP B 13 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 19 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP B 36 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP B 90 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP B 126 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP B 172 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 172 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP B 198 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 198 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 210 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 228 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 242 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 13 -101.58 12.60 REMARK 500 GLU A 14 -110.54 -14.24 REMARK 500 GLN A 16 -45.01 -155.76 REMARK 500 LYS A 17 85.98 1.06 REMARK 500 ASP A 36 127.30 178.60 REMARK 500 HIS A 59 44.63 -105.44 REMARK 500 PRO A 66 174.29 -53.28 REMARK 500 LYS A 67 -34.74 -135.93 REMARK 500 LYS A 85 49.84 -98.65 REMARK 500 ASN A 100 1.52 89.17 REMARK 500 SER A 112 -115.15 -101.97 REMARK 500 PHE A 113 -8.40 -53.32 REMARK 500 ASN A 117 -33.68 -32.25 REMARK 500 ALA A 142 -170.87 47.74 REMARK 500 ARG A 144 -125.93 50.20 REMARK 500 LYS A 145 -134.19 -168.56 REMARK 500 SER A 147 -102.84 -141.15 REMARK 500 LEU A 148 -0.52 84.30 REMARK 500 ASN A 185 -64.31 112.63 REMARK 500 TYR A 196 -49.51 -27.41 REMARK 500 LYS A 203 101.31 -59.32 REMARK 500 LYS A 229 -97.96 -98.16 REMARK 500 ASN B 15 47.17 -100.85 REMARK 500 GLN B 16 -44.80 -135.66 REMARK 500 TYR B 18 -11.48 164.64 REMARK 500 ASP B 19 72.31 -9.91 REMARK 500 PRO B 32 174.99 -54.42 REMARK 500 ARG B 49 -73.34 -29.71 REMARK 500 ASN B 70 37.51 -89.09 REMARK 500 GLU B 82 69.76 -152.76 REMARK 500 ASN B 100 62.70 62.49 REMARK 500 SER B 112 -108.32 -96.19 REMARK 500 ASN B 117 -27.03 48.92 REMARK 500 ALA B 142 145.55 -22.56 REMARK 500 ARG B 144 -108.03 -10.54 REMARK 500 SER B 147 56.45 -50.76 REMARK 500 LEU B 148 21.08 -79.29 REMARK 500 SER B 183 -97.49 -45.63 REMARK 500 THR B 186 -25.98 44.07 REMARK 500 HIS B 193 79.68 -113.07 REMARK 500 LEU B 225 -82.20 -25.08 REMARK 500 ARG B 226 -76.11 50.45 REMARK 500 ASN B 227 127.08 35.74 REMARK 500 LYS B 229 -88.52 -118.23 REMARK 500 REMARK 500 REMARK: NULL DBREF 1RVE A 2 245 UNP P04390 T2E5_ECOLI 1 244 DBREF 1RVE B 2 245 UNP P04390 T2E5_ECOLI 1 244 SEQRES 1 A 245 MET SER LEU ARG SER ASP LEU ILE ASN ALA LEU TYR ASP SEQRES 2 A 245 GLU ASN GLN LYS TYR ASP VAL CYS GLY ILE ILE SER ALA SEQRES 3 A 245 GLU GLY LYS ILE TYR PRO LEU GLY SER ASP THR LYS VAL SEQRES 4 A 245 LEU SER THR ILE PHE GLU LEU PHE SER ARG PRO ILE ILE SEQRES 5 A 245 ASN LYS ILE ALA GLU LYS HIS GLY TYR ILE VAL GLU GLU SEQRES 6 A 245 PRO LYS GLN GLN ASN HIS TYR PRO ASP PHE THR LEU TYR SEQRES 7 A 245 LYS PRO SER GLU PRO ASN LYS LYS ILE ALA ILE ASP ILE SEQRES 8 A 245 LYS THR THR TYR THR ASN LYS GLU ASN GLU LYS ILE LYS SEQRES 9 A 245 PHE THR LEU GLY GLY TYR THR SER PHE ILE ARG ASN ASN SEQRES 10 A 245 THR LYS ASN ILE VAL TYR PRO PHE ASP GLN TYR ILE ALA SEQRES 11 A 245 HIS TRP ILE ILE GLY TYR VAL TYR THR ARG VAL ALA THR SEQRES 12 A 245 ARG LYS SER SER LEU LYS THR TYR ASN ILE ASN GLU LEU SEQRES 13 A 245 ASN GLU ILE PRO LYS PRO TYR LYS GLY VAL LYS VAL PHE SEQRES 14 A 245 LEU GLN ASP LYS TRP VAL ILE ALA GLY ASP LEU ALA GLY SEQRES 15 A 245 SER GLY ASN THR THR ASN ILE GLY SER ILE HIS ALA HIS SEQRES 16 A 245 TYR LYS ASP PHE VAL GLU GLY LYS GLY ILE PHE ASP SER SEQRES 17 A 245 GLU ASP GLU PHE LEU ASP TYR TRP ARG ASN TYR GLU ARG SEQRES 18 A 245 THR SER GLN LEU ARG ASN ASP LYS TYR ASN ASN ILE SER SEQRES 19 A 245 GLU TYR ARG ASN TRP ILE TYR ARG GLY ARG LYS SEQRES 1 B 245 MET SER LEU ARG SER ASP LEU ILE ASN ALA LEU TYR ASP SEQRES 2 B 245 GLU ASN GLN LYS TYR ASP VAL CYS GLY ILE ILE SER ALA SEQRES 3 B 245 GLU GLY LYS ILE TYR PRO LEU GLY SER ASP THR LYS VAL SEQRES 4 B 245 LEU SER THR ILE PHE GLU LEU PHE SER ARG PRO ILE ILE SEQRES 5 B 245 ASN LYS ILE ALA GLU LYS HIS GLY TYR ILE VAL GLU GLU SEQRES 6 B 245 PRO LYS GLN GLN ASN HIS TYR PRO ASP PHE THR LEU TYR SEQRES 7 B 245 LYS PRO SER GLU PRO ASN LYS LYS ILE ALA ILE ASP ILE SEQRES 8 B 245 LYS THR THR TYR THR ASN LYS GLU ASN GLU LYS ILE LYS SEQRES 9 B 245 PHE THR LEU GLY GLY TYR THR SER PHE ILE ARG ASN ASN SEQRES 10 B 245 THR LYS ASN ILE VAL TYR PRO PHE ASP GLN TYR ILE ALA SEQRES 11 B 245 HIS TRP ILE ILE GLY TYR VAL TYR THR ARG VAL ALA THR SEQRES 12 B 245 ARG LYS SER SER LEU LYS THR TYR ASN ILE ASN GLU LEU SEQRES 13 B 245 ASN GLU ILE PRO LYS PRO TYR LYS GLY VAL LYS VAL PHE SEQRES 14 B 245 LEU GLN ASP LYS TRP VAL ILE ALA GLY ASP LEU ALA GLY SEQRES 15 B 245 SER GLY ASN THR THR ASN ILE GLY SER ILE HIS ALA HIS SEQRES 16 B 245 TYR LYS ASP PHE VAL GLU GLY LYS GLY ILE PHE ASP SER SEQRES 17 B 245 GLU ASP GLU PHE LEU ASP TYR TRP ARG ASN TYR GLU ARG SEQRES 18 B 245 THR SER GLN LEU ARG ASN ASP LYS TYR ASN ASN ILE SER SEQRES 19 B 245 GLU TYR ARG ASN TRP ILE TYR ARG GLY ARG LYS FORMUL 3 HOH *49(H2 O) HELIX 1 1 SER A 2 TYR A 12 1 11 HELIX 2 2 ASP A 36 HIS A 59 1 24 HELIX 3 3 PRO A 124 ASP A 126 5 3 HELIX 4 4 ASN A 152 LEU A 156 5 5 HELIX 5 5 GLU A 155 ILE A 159 5 5 HELIX 6 6 LYS A 173 ILE A 176 1 4 HELIX 7 7 HIS A 195 GLY A 202 1 8 HELIX 8 8 SER A 208 TYR A 219 1 12 HELIX 9 9 THR A 222 LYS A 229 1 8 HELIX 10 10 ASN A 232 GLY A 243 1 12 HELIX 11 11 SER B 2 ASN B 15 1 14 HELIX 12 12 ASP B 36 HIS B 59 1 24 HELIX 13 13 SER B 112 ASN B 117 1 6 HELIX 14 14 PRO B 124 ASP B 126 5 3 HELIX 15 15 ASN B 152 ILE B 159 5 8 HELIX 16 16 LYS B 173 ILE B 176 1 4 HELIX 17 17 HIS B 195 GLU B 201 1 7 HELIX 18 18 SER B 208 ASN B 218 1 11 HELIX 19 19 ASN B 232 ARG B 242 1 11 SHEET 1 A 4 ILE A 30 PRO A 32 0 SHEET 2 A 4 VAL A 20 SER A 25 -1 O ILE A 23 N TYR A 31 SHEET 3 A 4 VAL B 20 SER B 25 -1 N CYS B 21 O ILE A 24 SHEET 4 A 4 ILE B 30 TYR B 31 -1 N TYR B 31 O ILE B 23 SHEET 1 B 5 ILE A 62 GLU A 64 0 SHEET 2 B 5 PHE A 75 TYR A 78 -1 O THR A 76 N GLU A 64 SHEET 3 B 5 LYS A 86 THR A 96 -1 O ILE A 87 N LEU A 77 SHEET 4 B 5 TYR A 128 ARG A 140 1 N ILE A 129 O LYS A 86 SHEET 5 B 5 TYR A 163 ASP A 172 -1 N LYS A 164 O THR A 139 SHEET 1 C 3 THR A 106 GLY A 109 0 SHEET 2 C 3 ASN A 188 SER A 191 -1 O ILE A 189 N LEU A 107 SHEET 3 C 3 ALA A 177 ALA A 181 -1 N GLY A 178 O GLY A 190 SHEET 1 D 5 ILE B 62 GLU B 64 0 SHEET 2 D 5 PHE B 75 TYR B 78 -1 N THR B 76 O GLU B 64 SHEET 3 D 5 LYS B 86 THR B 96 -1 O ILE B 87 N LEU B 77 SHEET 4 D 5 TYR B 128 ARG B 140 1 N ILE B 129 O LYS B 86 SHEET 5 D 5 TYR B 163 ASP B 172 -1 N LYS B 164 O THR B 139 SHEET 1 E 3 THR B 106 GLY B 109 0 SHEET 2 E 3 ASN B 188 SER B 191 -1 O ILE B 189 N LEU B 107 SHEET 3 E 3 ALA B 177 ALA B 181 -1 N GLY B 178 O GLY B 190 CISPEP 1 TYR A 72 PRO A 73 0 -0.89 CISPEP 2 TYR B 72 PRO B 73 0 0.13 CRYST1 58.200 71.700 130.600 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017182 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007657 0.00000