HEADER DE NOVO PROTEIN 14-DEC-03 1RVS TITLE STRUCTURE OF TRANSTHYRETIN IN AMYLOID FIBRILS DETERMINED BY SOLID- TITLE 2 STATE MAGIC ANGLE SPINNING NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-11; COMPND 5 SYNONYM: PREALBUMIN, TBPA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 4 ORGANISM_COMMON: NORWAY RAT; SOURCE 5 ORGANISM_TAXID: 10116; SOURCE 6 OTHER_DETAILS: THE PEPTIDE WAS SYNTHESIZED BY STANDARD SOLID-PHASE SOURCE 7 METHODS AND HPLC PURIFICATION. KEYWDS TRANSTHYRETIN, TTR, AMYLOID, FIBRIL, DE NOVO PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 20 AUTHOR C.P.JARONIEC,C.E.MACPHEE,V.S.BAJAJ,M.T.MCMAHON,C.M.DOBSON,R.G.GRIFFIN REVDAT 4 01-MAY-24 1RVS 1 REMARK REVDAT 3 07-JUL-21 1RVS 1 SOURCE REMARK REVDAT 2 24-FEB-09 1RVS 1 VERSN REVDAT 1 20-JAN-04 1RVS 0 JRNL AUTH C.P.JARONIEC,C.E.MACPHEE,V.S.BAJAJ,M.T.MCMAHON,C.M.DOBSON, JRNL AUTH 2 R.G.GRIFFIN JRNL TITL HIGH-RESOLUTION MOLECULAR STRUCTURE OF A PEPTIDE IN AN JRNL TITL 2 AMYLOID FIBRIL DETERMINED BY MAGIC ANGLE SPINNING NMR JRNL TITL 3 SPECTROSCOPY JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 711 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 14715898 JRNL DOI 10.1073/PNAS.0304849101 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.P.JARONIEC,C.E.MACPHEE,N.S.ASTROF,C.M.DOBSON,R.G.GRIFFIN REMARK 1 TITL MOLECULAR CONFORMATION OF A PEPTIDE FRAGMENT OF REMARK 1 TITL 2 TRANSTHYRETIN IN AN AMYLOID FIBRIL REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 99 16748 2002 REMARK 1 REFN ISSN 0027-8424 REMARK 1 DOI 10.1073/PNAS.252625999 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN ADDITION TO EXPERIMENTAL NMR REMARK 3 RESTRAINTS, BACKBONE CONFORMATION INDEPENDENT DATABASE-DERIVED REMARK 3 RESTRAINTS (DUNBRACK, R.L. AND KARPLUS, M.J., J.MOL.BIOL. 1993, REMARK 3 203:543-574) WERE USED TO UNIQUELY DEFINE THE SIDE-CHAIN REMARK 3 CONFORMATION OF TYR AND LEU RESIDUES REMARK 4 REMARK 4 1RVS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000021071. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 275.15 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : TRANSTHYRETIN AMYLOID FIBRILS REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D-TEDOR; 2D-FS-REDOR; 3D-N-C-C REMARK 210 -N; 3D-H-N-C-H REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : HOME-BUILT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : RNMR REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 1RVS A 1 11 UNP P02767 TTHY_RAT 125 135 SEQRES 1 A 11 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1