HEADER ELECTRON TRANSPORT 16-DEC-03 1RWD TITLE BACKBONE NMR STRUCTURE OF A MUTANT P. FURIOSUS RUBREDOXIN USING TITLE 2 RESIDUAL DIPOLAR COUPLINGS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBREDOXIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RD; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: RUB, PF1282; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: NCM533; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS RESIDUAL DIPOLAR COUPLINGS, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, SOUTHEAST COLLABORATORY FOR STRUCTURAL KEYWDS 3 GENOMICS, SECSG, ELECTRON TRANSPORT EXPDTA SOLUTION NMR AUTHOR F.TIAN,H.VALAFAR,J.H.PRESTEGARD,SOUTHEAST COLLABORATORY FOR AUTHOR 2 STRUCTURAL GENOMICS (SECSG) REVDAT 4 27-OCT-21 1RWD 1 REMARK SEQADV REVDAT 3 24-FEB-09 1RWD 1 VERSN REVDAT 2 01-FEB-05 1RWD 1 AUTHOR KEYWDS REMARK REVDAT 1 23-DEC-03 1RWD 0 SPRSDE 23-DEC-03 1RWD 1M2Y JRNL AUTH F.TIAN,H.VALAFAR,J.H.PRESTEGARD JRNL TITL A DIPOLAR COUPLING BASED STRATEGY FOR SIMULTANEOUS RESONANCE JRNL TITL 2 ASSIGNMENT AND STRUCTURE DETERMINATION OF PROTEIN BACKBONES JRNL REF J.AM.CHEM.SOC. V. 123 11791 2001 JRNL REFN ISSN 0002-7863 JRNL PMID 11716736 JRNL DOI 10.1021/JA011806H REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REDCRAFT 1.0, XPLOR-NIH 2.9.1 REMARK 3 AUTHORS : VALAFAR, H. & PRESTEGARD, J.H. (REDCRAFT), REMARK 3 SCHWIETERS, C.D., KUSZEWSKI, J.J., TJANDRA, N. & REMARK 3 CLORE, G.M. (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RDCS WERE USED IN THE INITIAL ASSEMBLY REMARK 3 OF 6 FRAGMENTS. RDCS FROM TWO MEDIA WERE USED TO SET RELATIVE REMARK 3 ORIENTATION OF FRAGMENTS. TRANSLATIONAL RELATIONSHIPS OF REMARK 3 FRAGMENTS WERE DICTATED BY SEQUENCE CONNECTIVITIES. THE REMARK 3 ASSEMBLED STRUCTURE WAS MINIMIZED USING A MOLECULAR FORCE FIELD REMARK 3 AND RDC ERROR FUNCTION. ALL SIDECHAIN ATOMS BEYOND CB ARE REMARK 3 MISSING. REMARK 4 REMARK 4 1RWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000021090. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.3; 6.3 REMARK 210 IONIC STRENGTH : 100 MM NACL; 50 MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 4.5 MM RUBREDOXIN U-15N; 50 MM REMARK 210 NA PHOSPHATE; 100 MM NACL; PH REMARK 210 6.3; 2.5 MM RUBREDOXIN U-15N; 50 REMARK 210 MM NA PHOSPHATE ; 50 MM NACL; PH REMARK 210 6.3; 7% BICELLE (3:1 DMPC:DHPC REMARK 210 WITH 4% CTAB RELATIVE TO DMPC); REMARK 210 4.5 MM RUBREDOXIN U-15N; 50 MM REMARK 210 NA PHOSPHATE; 100 MM NACL; PH REMARK 210 6.3; PF1 PHAGE SAMPLE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SOFT HNCA-E.COSY; MODIFIED HNCO; REMARK 210 PHASE-MODULATED HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : REDCAT 1.0 REMARK 210 METHOD USED : RDC DIRECTED FRAGMENT ASSEMBLY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REMARK 210 STRUCTURE WAS DETERMINED USING RESIDUAL DIPOLAR COUPLINGS FROM REMARK 210 BACKBONE ATOM REMARK 210 PAIRS; MODELED AS AN ALA-GLY POLYPEPTIDE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 LEU A 51 REMARK 465 GLU A 52 REMARK 465 ASP A 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 28 C PHE A 29 N -0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 7 -66.33 -98.20 REMARK 500 TYR A 10 144.14 -25.69 REMARK 500 TYR A 12 34.07 -75.80 REMARK 500 ASP A 13 97.93 -35.01 REMARK 500 ASP A 18 71.82 -158.04 REMARK 500 GLU A 30 12.30 -68.59 REMARK 500 ILE A 40 -74.65 -89.70 REMARK 500 GLU A 47 38.36 -70.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M2Y RELATED DB: PDB REMARK 900 SAME PROTEIN, STRUCTURE WAS CALCULATED WITH AN INTERACTIVE, AS REMARK 900 OPPOSED TO AUTOMATED, RESIDUE ASSEMBLY PROCEDURE. SUBSEQUENT REMARK 900 REFINEMENT BY MINIMIZATION USED AN INCOMPLETE RESTRAINT SET. REMARK 900 RELATED ID: PFU-1210573-001 RELATED DB: TARGETDB DBREF 1RWD A 1 53 UNP P24297 RUBR_PYRFU 1 53 SEQADV 1RWD TYR A 3 UNP P24297 TRP 3 ENGINEERED MUTATION SEQADV 1RWD VAL A 23 UNP P24297 ILE 23 ENGINEERED MUTATION SEQADV 1RWD ILE A 32 UNP P24297 LEU 32 ENGINEERED MUTATION SEQRES 1 A 53 ALA LYS TYR VAL CYS LYS ILE CYS GLY TYR ILE TYR ASP SEQRES 2 A 53 GLU ASP ALA GLY ASP PRO ASP ASN GLY VAL SER PRO GLY SEQRES 3 A 53 THR LYS PHE GLU GLU ILE PRO ASP ASP TRP VAL CYS PRO SEQRES 4 A 53 ILE CYS GLY ALA PRO LYS SER GLU PHE GLU LYS LEU GLU SEQRES 5 A 53 ASP HELIX 1 1 ASP A 18 GLY A 22 5 5 HELIX 2 2 LYS A 28 ILE A 32 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000