data_1RXA # _entry.id 1RXA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RXA pdb_00001rxa 10.2210/pdb1rxa/pdb RCSB ARH063 ? ? WWPDB D_1000176263 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-10-20 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RXA _pdbx_database_status.recvd_initial_deposition_date 1995-05-05 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Portmann, S.' 1 'Usman, N.' 2 'Egli, M.' 3 # _citation.id primary _citation.title 'The crystal structure of r(CCCCGGGG) in two distinct lattices.' _citation.journal_abbrev Biochemistry _citation.journal_volume 34 _citation.page_first 7569 _citation.page_last 7575 _citation.year 1995 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7779802 _citation.pdbx_database_id_DOI 10.1021/bi00023a002 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Portmann, S.' 1 ? primary 'Usman, N.' 2 ? primary 'Egli, M.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;RNA (5'-R(*CP*CP*CP*CP*GP*GP*GP*G)-3') ; _entity.formula_weight 2556.593 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CCCCGGGG _entity_poly.pdbx_seq_one_letter_code_can CCCCGGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 C n 1 4 C n 1 5 G n 1 6 G n 1 7 G n 1 8 G n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1RXA _cell.length_a 39.734 _cell.length_b 39.734 _cell.length_c 58.545 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RXA _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # _exptl.entry_id 1RXA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.61 _exptl_crystal.density_percent_sol 52.86 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.50 _exptl_crystal_grow.pdbx_details 'pH 4.50, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 CACL2 ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ENRAF-NONIUS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _refine.entry_id 1RXA _refine.ls_number_reflns_obs 710 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 2.900 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2500000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2500000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 169 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 169 _refine_hist.d_res_high 2.900 _refine_hist.d_res_low 10.000 # _database_PDB_matrix.entry_id 1RXA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1RXA _struct.title 'CRYSTAL STRUCTURE OF R(CCCCGGGG) IN TWO DISTINCT LATTICES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RXA _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'A-RNA, DOUBLE HELIX, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1RXA _struct_ref.pdbx_db_accession 1RXA _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1RXA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1RXA _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 39.7340000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 29.2725000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 8 N1 ? ? A C 1 A G 8 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 8 O6 ? ? A C 1 A G 8 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 8 N2 ? ? A C 1 A G 8 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 7 N1 ? ? A C 2 A G 7 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 7 O6 ? ? A C 2 A G 7 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 7 N2 ? ? A C 2 A G 7 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 6 N1 ? ? A C 3 A G 6 11_655 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog8 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 5 N1 ? ? A C 4 A G 5 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 5 O6 ? ? A C 4 A G 5 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 5 N2 ? ? A C 4 A G 5 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 4 N3 ? ? A G 5 A C 4 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 4 O2 ? ? A G 5 A C 4 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 4 N4 ? ? A G 5 A C 4 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 3 O2 ? ? A G 6 A C 3 11_655 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 2 N3 ? ? A G 7 A C 2 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 2 O2 ? ? A G 7 A C 2 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 2 N4 ? ? A G 7 A C 2 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 1 N3 ? ? A G 8 A C 1 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 1 O2 ? ? A G 8 A C 1 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 1 N4 ? ? A G 8 A C 1 11_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" A C 1 ? ? "C2'" A C 1 ? ? 1.405 1.523 -0.118 0.011 N 2 1 "C2'" A C 1 ? ? "C1'" A C 1 ? ? 1.600 1.529 0.071 0.011 N 3 1 P A C 2 ? ? "O5'" A C 2 ? ? 1.659 1.593 0.066 0.010 N 4 1 "C5'" A C 2 ? ? "C4'" A C 2 ? ? 1.444 1.508 -0.064 0.007 N 5 1 "O3'" A C 2 ? ? "C3'" A C 2 ? ? 1.323 1.417 -0.094 0.014 N 6 1 "C2'" A C 2 ? ? "O2'" A C 2 ? ? 1.326 1.412 -0.086 0.013 N 7 1 N3 A C 2 ? ? C4 A C 2 ? ? 1.380 1.335 0.045 0.007 N 8 1 P A C 3 ? ? "O5'" A C 3 ? ? 1.663 1.593 0.070 0.010 N 9 1 "C2'" A C 3 ? ? "C1'" A C 3 ? ? 1.637 1.529 0.108 0.011 N 10 1 "O4'" A C 3 ? ? "C1'" A C 3 ? ? 1.502 1.415 0.087 0.012 N 11 1 C4 A C 3 ? ? N4 A C 3 ? ? 1.392 1.335 0.057 0.009 N 12 1 "C5'" A C 4 ? ? "C4'" A C 4 ? ? 1.587 1.509 0.078 0.012 N 13 1 "C2'" A G 5 ? ? "C1'" A G 5 ? ? 1.636 1.529 0.107 0.011 N 14 1 C6 A G 5 ? ? N1 A G 5 ? ? 1.322 1.391 -0.069 0.007 N 15 1 N7 A G 5 ? ? C8 A G 5 ? ? 1.347 1.305 0.042 0.006 N 16 1 C8 A G 5 ? ? N9 A G 5 ? ? 1.309 1.374 -0.065 0.007 N 17 1 C2 A G 5 ? ? N2 A G 5 ? ? 1.260 1.341 -0.081 0.010 N 18 1 C6 A G 6 ? ? N1 A G 6 ? ? 1.291 1.391 -0.100 0.007 N 19 1 C2 A G 6 ? ? N2 A G 6 ? ? 1.242 1.341 -0.099 0.010 N 20 1 "C1'" A G 7 ? ? N9 A G 7 ? ? 1.359 1.464 -0.105 0.014 N 21 1 C6 A G 7 ? ? N1 A G 7 ? ? 1.319 1.391 -0.072 0.007 N 22 1 C5 A G 7 ? ? N7 A G 7 ? ? 1.317 1.388 -0.071 0.006 N 23 1 N7 A G 7 ? ? C8 A G 7 ? ? 1.346 1.305 0.041 0.006 N 24 1 C2 A G 7 ? ? N2 A G 7 ? ? 1.262 1.341 -0.079 0.010 N 25 1 P A G 8 ? ? "O5'" A G 8 ? ? 1.667 1.593 0.074 0.010 N 26 1 "O5'" A G 8 ? ? "C5'" A G 8 ? ? 1.357 1.420 -0.063 0.009 N 27 1 "O3'" A G 8 ? ? "C3'" A G 8 ? ? 1.593 1.427 0.166 0.012 N 28 1 "C2'" A G 8 ? ? "O2'" A G 8 ? ? 1.612 1.420 0.192 0.010 N 29 1 C6 A G 8 ? ? N1 A G 8 ? ? 1.347 1.391 -0.044 0.007 N 30 1 C5 A G 8 ? ? N7 A G 8 ? ? 1.335 1.388 -0.053 0.006 N 31 1 C2 A G 8 ? ? N2 A G 8 ? ? 1.226 1.341 -0.115 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C2'" A C 1 ? ? "C3'" A C 1 ? ? "O3'" A C 1 ? ? 130.11 113.70 16.41 1.60 N 2 1 "C4'" A C 1 ? ? "C3'" A C 1 ? ? "C2'" A C 1 ? ? 110.11 102.60 7.51 1.00 N 3 1 "C3'" A C 1 ? ? "C2'" A C 1 ? ? "O2'" A C 1 ? ? 132.53 113.30 19.23 2.90 N 4 1 C2 A C 1 ? ? N3 A C 1 ? ? C4 A C 1 ? ? 123.20 119.90 3.30 0.50 N 5 1 N3 A C 1 ? ? C4 A C 1 ? ? C5 A C 1 ? ? 117.44 121.90 -4.46 0.40 N 6 1 C4 A C 1 ? ? C5 A C 1 ? ? C6 A C 1 ? ? 120.71 117.40 3.31 0.50 N 7 1 N1 A C 1 ? ? C2 A C 1 ? ? O2 A C 1 ? ? 126.75 118.90 7.85 0.60 N 8 1 N3 A C 1 ? ? C2 A C 1 ? ? O2 A C 1 ? ? 117.24 121.90 -4.66 0.70 N 9 1 N3 A C 1 ? ? C4 A C 1 ? ? N4 A C 1 ? ? 113.17 118.00 -4.83 0.70 N 10 1 C5 A C 1 ? ? C4 A C 1 ? ? N4 A C 1 ? ? 129.38 120.20 9.18 0.70 N 11 1 C2 A C 1 ? ? N1 A C 1 ? ? "C1'" A C 1 ? ? 112.02 118.80 -6.78 1.10 N 12 1 "O5'" A C 2 ? ? P A C 2 ? ? OP1 A C 2 ? ? 119.17 110.70 8.47 1.20 N 13 1 "O5'" A C 2 ? ? P A C 2 ? ? OP2 A C 2 ? ? 98.15 105.70 -7.55 0.90 N 14 1 P A C 2 ? ? "O5'" A C 2 ? ? "C5'" A C 2 ? ? 104.52 120.90 -16.38 1.60 N 15 1 "O4'" A C 2 ? ? "C4'" A C 2 ? ? "C3'" A C 2 ? ? 94.80 104.00 -9.20 1.00 N 16 1 "C5'" A C 2 ? ? "C4'" A C 2 ? ? "O4'" A C 2 ? ? 94.19 109.10 -14.91 1.20 N 17 1 "C3'" A C 2 ? ? "C2'" A C 2 ? ? "C1'" A C 2 ? ? 95.48 101.30 -5.82 0.70 N 18 1 C2 A C 2 ? ? N3 A C 2 ? ? C4 A C 2 ? ? 124.29 119.90 4.39 0.50 N 19 1 N3 A C 2 ? ? C4 A C 2 ? ? C5 A C 2 ? ? 117.61 121.90 -4.29 0.40 N 20 1 N1 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 125.44 118.90 6.54 0.60 N 21 1 C5 A C 2 ? ? C4 A C 2 ? ? N4 A C 2 ? ? 125.78 120.20 5.58 0.70 N 22 1 "C3'" A C 2 ? ? "O3'" A C 2 ? ? P A C 3 ? ? 133.58 119.70 13.88 1.20 Y 23 1 "O5'" A C 3 ? ? P A C 3 ? ? OP1 A C 3 ? ? 90.05 105.70 -15.65 0.90 N 24 1 "O5'" A C 3 ? ? P A C 3 ? ? OP2 A C 3 ? ? 126.63 110.70 15.93 1.20 N 25 1 P A C 3 ? ? "O5'" A C 3 ? ? "C5'" A C 3 ? ? 110.98 120.90 -9.92 1.60 N 26 1 "C5'" A C 3 ? ? "C4'" A C 3 ? ? "C3'" A C 3 ? ? 125.60 116.00 9.60 1.60 N 27 1 "C1'" A C 3 ? ? "O4'" A C 3 ? ? "C4'" A C 3 ? ? 115.17 109.90 5.27 0.80 N 28 1 "C2'" A C 3 ? ? "C3'" A C 3 ? ? "O3'" A C 3 ? ? 123.98 113.70 10.28 1.60 N 29 1 "C4'" A C 3 ? ? "C3'" A C 3 ? ? "C2'" A C 3 ? ? 110.48 102.60 7.88 1.00 N 30 1 "O4'" A C 3 ? ? "C1'" A C 3 ? ? "C2'" A C 3 ? ? 97.34 105.80 -8.46 1.00 N 31 1 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 118.19 108.50 9.69 0.70 N 32 1 C2 A C 3 ? ? N3 A C 3 ? ? C4 A C 3 ? ? 126.48 119.90 6.58 0.50 N 33 1 N3 A C 3 ? ? C4 A C 3 ? ? C5 A C 3 ? ? 115.74 121.90 -6.16 0.40 N 34 1 C5 A C 3 ? ? C6 A C 3 ? ? N1 A C 3 ? ? 125.84 121.00 4.84 0.50 N 35 1 N1 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 122.98 118.90 4.08 0.60 N 36 1 N3 A C 3 ? ? C4 A C 3 ? ? N4 A C 3 ? ? 125.92 118.00 7.92 0.70 N 37 1 "C3'" A C 3 ? ? "O3'" A C 3 ? ? P A C 4 ? ? 130.28 119.70 10.58 1.20 Y 38 1 "O3'" A C 3 ? ? P A C 4 ? ? "O5'" A C 4 ? ? 115.92 104.00 11.92 1.90 Y 39 1 "O3'" A C 3 ? ? P A C 4 ? ? OP2 A C 4 ? ? 118.00 110.50 7.50 1.10 Y 40 1 "O3'" A C 3 ? ? P A C 4 ? ? OP1 A C 4 ? ? 90.95 105.20 -14.25 2.20 Y 41 1 "O5'" A C 4 ? ? P A C 4 ? ? OP1 A C 4 ? ? 92.68 105.70 -13.02 0.90 N 42 1 "O5'" A C 4 ? ? "C5'" A C 4 ? ? "C4'" A C 4 ? ? 102.21 109.40 -7.19 0.80 N 43 1 "O4'" A C 4 ? ? "C4'" A C 4 ? ? "C3'" A C 4 ? ? 93.02 104.00 -10.98 1.00 N 44 1 "C5'" A C 4 ? ? "C4'" A C 4 ? ? "C3'" A C 4 ? ? 127.70 116.00 11.70 1.60 N 45 1 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 99.28 108.20 -8.92 0.80 N 46 1 C2 A C 4 ? ? N3 A C 4 ? ? C4 A C 4 ? ? 124.51 119.90 4.61 0.50 N 47 1 N1 A C 4 ? ? C2 A C 4 ? ? O2 A C 4 ? ? 122.59 118.90 3.69 0.60 N 48 1 "C3'" A C 4 ? ? "O3'" A C 4 ? ? P A G 5 ? ? 107.76 119.70 -11.94 1.20 Y 49 1 "O3'" A C 4 ? ? P A G 5 ? ? "O5'" A G 5 ? ? 115.90 104.00 11.90 1.90 Y 50 1 "O3'" A C 4 ? ? P A G 5 ? ? OP1 A G 5 ? ? 90.19 105.20 -15.01 2.20 Y 51 1 "O5'" A G 5 ? ? P A G 5 ? ? OP1 A G 5 ? ? 96.20 105.70 -9.50 0.90 N 52 1 "O5'" A G 5 ? ? "C5'" A G 5 ? ? "C4'" A G 5 ? ? 89.43 109.40 -19.97 0.80 N 53 1 P A G 5 ? ? "O5'" A G 5 ? ? "C5'" A G 5 ? ? 110.04 120.90 -10.86 1.60 N 54 1 "O4'" A G 5 ? ? "C4'" A G 5 ? ? "C3'" A G 5 ? ? 97.97 104.00 -6.03 1.00 N 55 1 "C5'" A G 5 ? ? "C4'" A G 5 ? ? "O4'" A G 5 ? ? 96.84 109.10 -12.26 1.20 N 56 1 "C2'" A G 5 ? ? "C3'" A G 5 ? ? "O3'" A G 5 ? ? 126.79 113.70 13.09 1.60 N 57 1 C6 A G 5 ? ? N1 A G 5 ? ? C2 A G 5 ? ? 119.69 125.10 -5.41 0.60 N 58 1 C5 A G 5 ? ? C6 A G 5 ? ? N1 A G 5 ? ? 117.03 111.50 5.53 0.50 N 59 1 N1 A G 5 ? ? C2 A G 5 ? ? N2 A G 5 ? ? 122.11 116.20 5.91 0.90 N 60 1 N3 A G 5 ? ? C2 A G 5 ? ? N2 A G 5 ? ? 110.40 119.90 -9.50 0.70 N 61 1 C5 A G 5 ? ? C6 A G 5 ? ? O6 A G 5 ? ? 123.10 128.60 -5.50 0.60 N 62 1 "O3'" A G 5 ? ? P A G 6 ? ? "O5'" A G 6 ? ? 116.77 104.00 12.77 1.90 Y 63 1 "O5'" A G 6 ? ? "C5'" A G 6 ? ? "C4'" A G 6 ? ? 103.28 109.40 -6.12 0.80 N 64 1 "O4'" A G 6 ? ? "C4'" A G 6 ? ? "C3'" A G 6 ? ? 97.18 104.00 -6.82 1.00 N 65 1 "C5'" A G 6 ? ? "C4'" A G 6 ? ? "O4'" A G 6 ? ? 101.63 109.10 -7.47 1.20 N 66 1 "C1'" A G 6 ? ? "O4'" A G 6 ? ? "C4'" A G 6 ? ? 102.03 109.70 -7.67 0.70 N 67 1 "C3'" A G 6 ? ? "C2'" A G 6 ? ? "C1'" A G 6 ? ? 94.14 101.30 -7.16 0.70 N 68 1 "O4'" A G 6 ? ? "C1'" A G 6 ? ? "C2'" A G 6 ? ? 114.25 107.60 6.65 0.90 N 69 1 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 97.63 108.20 -10.57 0.80 N 70 1 C6 A G 6 ? ? N1 A G 6 ? ? C2 A G 6 ? ? 119.55 125.10 -5.55 0.60 N 71 1 N1 A G 6 ? ? C2 A G 6 ? ? N3 A G 6 ? ? 131.94 123.90 8.04 0.60 N 72 1 C2 A G 6 ? ? N3 A G 6 ? ? C4 A G 6 ? ? 104.49 111.90 -7.41 0.50 N 73 1 C5 A G 6 ? ? C6 A G 6 ? ? N1 A G 6 ? ? 117.61 111.50 6.11 0.50 N 74 1 N3 A G 6 ? ? C2 A G 6 ? ? N2 A G 6 ? ? 108.66 119.90 -11.24 0.70 N 75 1 C5 A G 6 ? ? C6 A G 6 ? ? O6 A G 6 ? ? 123.91 128.60 -4.69 0.60 N 76 1 OP1 A G 7 ? ? P A G 7 ? ? OP2 A G 7 ? ? 138.10 119.60 18.50 1.50 N 77 1 "O5'" A G 7 ? ? P A G 7 ? ? OP1 A G 7 ? ? 97.02 105.70 -8.68 0.90 N 78 1 "O5'" A G 7 ? ? "C5'" A G 7 ? ? "C4'" A G 7 ? ? 102.52 109.40 -6.88 0.80 N 79 1 N9 A G 7 ? ? "C1'" A G 7 ? ? "C2'" A G 7 ? ? 101.58 112.00 -10.42 1.10 N 80 1 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 114.24 108.50 5.74 0.70 N 81 1 "C1'" A G 7 ? ? "C2'" A G 7 ? ? "O2'" A G 7 ? ? 89.75 110.60 -20.85 3.00 N 82 1 C6 A G 7 ? ? N1 A G 7 ? ? C2 A G 7 ? ? 119.43 125.10 -5.67 0.60 N 83 1 N1 A G 7 ? ? C2 A G 7 ? ? N3 A G 7 ? ? 132.05 123.90 8.15 0.60 N 84 1 C2 A G 7 ? ? N3 A G 7 ? ? C4 A G 7 ? ? 103.87 111.90 -8.03 0.50 N 85 1 C4 A G 7 ? ? C5 A G 7 ? ? N7 A G 7 ? ? 113.31 110.80 2.51 0.40 N 86 1 C5 A G 7 ? ? N7 A G 7 ? ? C8 A G 7 ? ? 100.11 104.30 -4.19 0.50 N 87 1 N7 A G 7 ? ? C8 A G 7 ? ? N9 A G 7 ? ? 116.24 113.10 3.14 0.50 N 88 1 C8 A G 7 ? ? N9 A G 7 ? ? C4 A G 7 ? ? 102.92 106.40 -3.48 0.40 N 89 1 C6 A G 7 ? ? C5 A G 7 ? ? N7 A G 7 ? ? 125.81 130.40 -4.59 0.60 N 90 1 N3 A G 7 ? ? C2 A G 7 ? ? N2 A G 7 ? ? 112.34 119.90 -7.56 0.70 N 91 1 C5 A G 7 ? ? C6 A G 7 ? ? O6 A G 7 ? ? 123.73 128.60 -4.87 0.60 N 92 1 C8 A G 7 ? ? N9 A G 7 ? ? "C1'" A G 7 ? ? 115.62 127.00 -11.38 1.30 N 93 1 C4 A G 7 ? ? N9 A G 7 ? ? "C1'" A G 7 ? ? 141.46 126.50 14.96 1.30 N 94 1 "O5'" A G 8 ? ? "C5'" A G 8 ? ? "C4'" A G 8 ? ? 133.87 111.70 22.17 1.90 N 95 1 "O4'" A G 8 ? ? "C4'" A G 8 ? ? "C3'" A G 8 ? ? 113.67 106.10 7.57 0.80 N 96 1 "C5'" A G 8 ? ? "C4'" A G 8 ? ? "C3'" A G 8 ? ? 132.70 116.00 16.70 1.60 N 97 1 "C5'" A G 8 ? ? "C4'" A G 8 ? ? "O4'" A G 8 ? ? 87.10 109.10 -22.00 1.20 N 98 1 "C4'" A G 8 ? ? "C3'" A G 8 ? ? "O3'" A G 8 ? ? 130.85 113.00 17.85 2.00 N 99 1 "C3'" A G 8 ? ? "C2'" A G 8 ? ? "C1'" A G 8 ? ? 110.17 101.50 8.67 0.80 N 100 1 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 95.20 108.20 -13.00 0.80 N 101 1 C6 A G 8 ? ? N1 A G 8 ? ? C2 A G 8 ? ? 113.90 125.10 -11.20 0.60 N 102 1 N1 A G 8 ? ? C2 A G 8 ? ? N3 A G 8 ? ? 133.95 123.90 10.05 0.60 N 103 1 C2 A G 8 ? ? N3 A G 8 ? ? C4 A G 8 ? ? 107.96 111.90 -3.94 0.50 N 104 1 C5 A G 8 ? ? C6 A G 8 ? ? N1 A G 8 ? ? 118.48 111.50 6.98 0.50 N 105 1 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.81 106.40 -2.59 0.40 N 106 1 N1 A G 8 ? ? C2 A G 8 ? ? N2 A G 8 ? ? 109.37 116.20 -6.83 0.90 N 107 1 N1 A G 8 ? ? C6 A G 8 ? ? O6 A G 8 ? ? 115.72 119.90 -4.18 0.60 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 # _ndb_struct_conf_na.entry_id 1RXA _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 8 11_655 -0.593 -0.398 -0.126 5.126 6.802 -2.555 1 A_C1:G8_A A 1 ? A 8 ? 19 1 1 A C 2 1_555 A G 7 11_655 -0.173 -0.259 -0.246 13.552 -5.985 -9.032 2 A_C2:G7_A A 2 ? A 7 ? 19 1 1 A C 3 1_555 A G 6 11_655 0.632 0.095 0.550 -1.182 -7.685 9.515 3 A_C3:G6_A A 3 ? A 6 ? ? 1 1 A C 4 1_555 A G 5 11_655 -0.154 -0.381 0.553 -7.877 -7.021 -4.138 4 A_C4:G5_A A 4 ? A 5 ? 19 1 1 A G 5 1_555 A C 4 11_655 0.154 -0.381 0.553 7.877 -7.021 -4.138 5 A_G5:C4_A A 5 ? A 4 ? 19 1 1 A G 6 1_555 A C 3 11_655 -0.632 0.095 0.550 1.182 -7.685 9.515 6 A_G6:C3_A A 6 ? A 3 ? ? 1 1 A G 7 1_555 A C 2 11_655 0.173 -0.259 -0.246 -13.552 -5.985 -9.032 7 A_G7:C2_A A 7 ? A 2 ? 19 1 1 A G 8 1_555 A C 1 11_655 0.593 -0.398 -0.126 -5.126 6.802 -2.554 8 A_G8:C1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 8 11_655 A C 2 1_555 A G 7 11_655 -0.183 -1.887 3.107 -0.576 3.168 37.823 -3.276 0.213 2.948 4.876 0.886 37.955 1 AA_C1C2:G7G8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A C 2 1_555 A G 7 11_655 A C 3 1_555 A G 6 11_655 0.706 -2.204 3.573 -4.467 3.241 40.400 -3.542 -1.534 3.301 4.667 6.432 40.759 2 AA_C2C3:G6G7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A C 3 1_555 A G 6 11_655 A C 4 1_555 A G 5 11_655 -0.842 -2.188 3.125 0.673 13.700 23.081 -7.464 1.951 1.573 30.976 -1.522 26.802 3 AA_C3C4:G5G6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A C 4 1_555 A G 5 11_655 A G 5 1_555 A C 4 11_655 0.000 -1.784 2.814 0.000 -0.120 37.313 -2.774 0.000 2.819 -0.187 0.000 37.313 4 AA_C4G5:C4G5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A G 5 1_555 A C 4 11_655 A G 6 1_555 A C 3 11_655 0.842 -2.188 3.125 -0.673 13.700 23.081 -7.464 -1.951 1.573 30.976 1.522 26.802 5 AA_G5G6:C3C4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A G 6 1_555 A C 3 11_655 A G 7 1_555 A C 2 11_655 -0.706 -2.204 3.573 4.467 3.241 40.400 -3.542 1.534 3.301 4.667 -6.432 40.759 6 AA_G6G7:C2C3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A G 7 1_555 A C 2 11_655 A G 8 1_555 A C 1 11_655 0.183 -1.887 3.107 0.576 3.168 37.823 -3.276 -0.213 2.948 4.876 -0.886 37.955 7 AA_G7G8:C1C2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _atom_sites.entry_id 1RXA _atom_sites.fract_transf_matrix[1][1] 0.025167 _atom_sites.fract_transf_matrix[1][2] 0.014530 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029061 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017081 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_