HEADER ANTIBIOTIC 19-DEC-03 1RY3 TITLE NMR SOLUTION STRUCTURE OF THE PRECURSOR FOR CARNOBACTERIOCIN B2, AN TITLE 2 ANTIMICROBIAL PEPTIDE FROM CARNOBACTERIUM PISCICOLA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOCIN CARNOBACTERIOCIN B2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CARNOCIN CP52; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARNOBACTERIUM MALTAROMATICUM; SOURCE 3 ORGANISM_TAXID: 2751; SOURCE 4 STRAIN: LV17B; SOURCE 5 GENE: CBNB2, CANCP52; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL-C KEYWDS AMPHIPATHIC HELIX, ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SPRULES,K.E.KAWULKA,A.C.GIBBS,D.S.WISHART,J.C.VEDERAS REVDAT 4 30-OCT-24 1RY3 1 REMARK REVDAT 3 02-MAR-22 1RY3 1 REMARK REVDAT 2 24-FEB-09 1RY3 1 VERSN REVDAT 1 04-MAY-04 1RY3 0 JRNL AUTH T.SPRULES,K.E.KAWULKA,A.C.GIBBS,D.S.WISHART,J.C.VEDERAS JRNL TITL NMR SOLUTION STRUCTURE OF THE PRECURSOR FOR CARNOBACTERIOCIN JRNL TITL 2 B2, AN ANTIMICROBIAL PEPTIDE FROM CARNOBACTERIUM PISCICOLA. JRNL REF EUR.J.BIOCHEM. V. 271 1748 2004 JRNL REFN ISSN 0014-2956 JRNL PMID 15096213 JRNL DOI 10.1111/J.1432-1033.2004.04085.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 649 NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 22 HYDROGEN BONDS AND 91 DIHEDRAL ANGLES WERE USED IN THE REMARK 3 CALCULATION REMARK 4 REMARK 4 1RY3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000021136. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM PRECARNOBACTERIOCIN B2 U REMARK 210 -15N; 1 MM PRECARNOBACTERIOCIN REMARK 210 B2 U-15N,U-13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; HNHA; REMARK 210 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.2, NMRVIEW 5.0, CNS REMARK 210 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 3 68.01 63.22 REMARK 500 1 SER A 10 111.33 -160.93 REMARK 500 1 LYS A 11 -14.67 65.28 REMARK 500 1 CYS A 14 50.29 -104.14 REMARK 500 1 ASN A 17 62.29 -106.72 REMARK 500 1 VAL A 34 -74.92 -54.70 REMARK 500 1 VAL A 37 -71.58 -91.29 REMARK 500 1 ALA A 38 -75.15 -83.42 REMARK 500 1 SER A 39 5.11 -62.73 REMARK 500 2 ASN A 2 37.59 -161.92 REMARK 500 2 TYR A 3 39.68 -177.90 REMARK 500 2 SER A 8 -179.97 51.99 REMARK 500 2 SER A 10 108.67 -168.57 REMARK 500 2 LYS A 11 -8.50 62.96 REMARK 500 2 CYS A 14 50.94 -98.16 REMARK 500 2 VAL A 34 -74.50 -54.66 REMARK 500 2 VAL A 37 -72.56 -91.43 REMARK 500 2 ALA A 38 -75.24 -83.41 REMARK 500 2 SER A 39 6.47 -62.78 REMARK 500 2 SER A 43 58.79 -109.17 REMARK 500 3 LEU A -4 -71.99 -90.43 REMARK 500 3 VAL A 1 -169.41 44.97 REMARK 500 3 VAL A 7 -160.75 -101.57 REMARK 500 3 LYS A 13 178.69 -52.06 REMARK 500 3 CYS A 14 33.50 -94.88 REMARK 500 3 SER A 15 78.09 -161.92 REMARK 500 3 ASN A 17 39.55 179.71 REMARK 500 3 VAL A 34 -73.98 -54.78 REMARK 500 3 VAL A 37 -70.54 -91.47 REMARK 500 3 ALA A 38 -75.10 -83.47 REMARK 500 3 SER A 39 9.34 -63.91 REMARK 500 3 ILE A 44 51.60 -163.84 REMARK 500 4 GLU A -8 -74.30 -55.55 REMARK 500 4 LEU A -4 -71.84 -90.17 REMARK 500 4 ASN A 2 59.08 -152.39 REMARK 500 4 TYR A 3 79.82 60.26 REMARK 500 4 VAL A 7 -161.63 41.09 REMARK 500 4 CYS A 9 173.88 -48.64 REMARK 500 4 SER A 10 111.08 -166.82 REMARK 500 4 CYS A 14 37.24 -99.96 REMARK 500 4 ASN A 17 98.04 -179.37 REMARK 500 4 VAL A 34 -70.62 -54.78 REMARK 500 4 VAL A 37 -70.88 -91.41 REMARK 500 4 ALA A 38 -75.26 -83.31 REMARK 500 4 SER A 39 6.76 -63.20 REMARK 500 4 ALA A 41 -82.91 -163.13 REMARK 500 4 SER A 43 45.61 -94.35 REMARK 500 5 GLU A -8 -70.69 -60.76 REMARK 500 5 VAL A 1 100.34 -58.43 REMARK 500 5 ASN A 2 38.58 -159.74 REMARK 500 REMARK 500 THIS ENTRY HAS 240 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1RY3 A -18 45 UNP P38580 CBB2_CARPI 1 64 SEQRES 1 A 64 MET ASN SER VAL LYS GLU LEU ASN VAL LYS GLU MET LYS SEQRES 2 A 64 GLN LEU HIS GLY GLY VAL ASN TYR GLY ASN GLY VAL SER SEQRES 3 A 64 CYS SER LYS THR LYS CYS SER VAL ASN TRP GLY GLN ALA SEQRES 4 A 64 PHE GLN GLU ARG TYR THR ALA GLY ILE ASN SER PHE VAL SEQRES 5 A 64 SER GLY VAL ALA SER GLY ALA GLY SER ILE GLY ARG HELIX 1 1 SER A -16 GLN A -5 1 12 HELIX 2 2 GLY A 19 ALA A 38 1 20 SSBOND 1 CYS A 9 CYS A 14 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1