HEADER CHAPERONE 20-DEC-03 1RY9 TITLE SPA15, A TYPE III SECRETION CHAPERONE FROM SHIGELLA FLEXNERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAK; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: SPA15 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: SPAK, SPA15, CP0148; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PQE30 KEYWDS ALPHA/BETA FOLD, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR A.VAN EERDE,C.HAMIAUX,J.PEREZ,C.PARSOT,B.W.DIJKSTRA REVDAT 7 14-FEB-24 1RY9 1 REMARK SEQADV REVDAT 6 11-OCT-17 1RY9 1 REMARK REVDAT 5 13-JUL-11 1RY9 1 VERSN REVDAT 4 24-FEB-09 1RY9 1 VERSN REVDAT 3 01-MAR-05 1RY9 1 JRNL REVDAT 2 04-MAY-04 1RY9 1 EXPDTA REVDAT 1 27-APR-04 1RY9 0 JRNL AUTH A.VAN EERDE,C.HAMIAUX,J.PEREZ,C.PARSOT,B.W.DIJKSTRA JRNL TITL STRUCTURE OF SPA15, A TYPE III SECRETION CHAPERONE FROM JRNL TITL 2 SHIGELLA FLEXNERI WITH BROAD SPECIFICITY. JRNL REF EMBO REP. V. 5 477 2004 JRNL REFN ISSN 1469-221X JRNL PMID 15088068 JRNL DOI 10.1038/SJ.EMBOR.7400144 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.27 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 42717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2292 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2963 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4244 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.872 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4358 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4024 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5930 ; 1.235 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9351 ; 0.696 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 532 ; 3.024 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 714 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4783 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 817 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 861 ; 0.200 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4787 ; 0.228 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2723 ; 0.088 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 290 ; 0.190 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.150 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 139 ; 0.205 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.218 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2679 ; 2.409 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4379 ; 3.969 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1679 ; 5.602 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1551 ; 8.352 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2756 45.2559 30.0352 REMARK 3 T TENSOR REMARK 3 T11: 0.0606 T22: 0.0455 REMARK 3 T33: 0.0224 T12: -0.0068 REMARK 3 T13: -0.0128 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.1231 L22: 2.1919 REMARK 3 L33: 0.9776 L12: 0.0167 REMARK 3 L13: 0.0162 L23: -1.0801 REMARK 3 S TENSOR REMARK 3 S11: 0.0550 S12: -0.1321 S13: -0.0373 REMARK 3 S21: 0.1836 S22: -0.0801 S23: 0.0889 REMARK 3 S31: -0.1256 S32: 0.0205 S33: 0.0251 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0997 44.9461 3.4280 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0522 REMARK 3 T33: 0.0192 T12: -0.0014 REMARK 3 T13: -0.0075 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 1.9326 L22: 1.7226 REMARK 3 L33: 1.1569 L12: 0.3609 REMARK 3 L13: 0.2506 L23: 0.7490 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: 0.2042 S13: -0.1074 REMARK 3 S21: -0.1563 S22: 0.0278 S23: -0.0460 REMARK 3 S31: -0.1119 S32: 0.0461 S33: -0.0012 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 133 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0548 32.0594 59.3462 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: 0.0460 REMARK 3 T33: 0.0125 T12: -0.0087 REMARK 3 T13: 0.0096 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.2517 L22: 2.1818 REMARK 3 L33: 1.0308 L12: -0.0613 REMARK 3 L13: -0.0602 L23: 0.9993 REMARK 3 S TENSOR REMARK 3 S11: 0.0741 S12: -0.1332 S13: 0.0448 REMARK 3 S21: 0.1657 S22: -0.0965 S23: -0.1006 REMARK 3 S31: 0.0928 S32: -0.0205 S33: 0.0224 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 133 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7034 32.4182 32.8200 REMARK 3 T TENSOR REMARK 3 T11: 0.0379 T22: 0.0600 REMARK 3 T33: 0.0076 T12: 0.0004 REMARK 3 T13: 0.0128 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.2191 L22: 1.8565 REMARK 3 L33: 1.2656 L12: 0.4267 REMARK 3 L13: -0.3726 L23: -0.8891 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: 0.2651 S13: 0.0937 REMARK 3 S21: -0.1421 S22: 0.0446 S23: 0.0240 REMARK 3 S31: 0.0871 S32: -0.0297 S33: -0.0105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1RY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000021142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-02; 26-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID14-2; BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9196; 0.9794, 0.9795, 0.9760 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45246 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SNB, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE FIRST CRYSTAL IS A NATIVE ONE, ALL DATA COLLECTION AND REMARK 200 REFINEMENT STATISTICS BELONGS TO THE NATIVE CRYSTAL. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SUPLHATE, ETHYLENE GLYCOL, REMARK 280 GUANIDIUM CHLORIDE, MES, PH 5.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.84100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET B -11 REMARK 465 ARG B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET D -11 REMARK 465 ARG D -10 REMARK 465 GLY D -9 REMARK 465 SER D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 12 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 59 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP C 26 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP D 59 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 28 -168.48 -165.79 REMARK 500 ASP B 95 -128.33 53.51 REMARK 500 ASP C 28 -168.59 -160.11 REMARK 500 ASP D 38 -72.05 -50.00 REMARK 500 ASP D 95 -128.60 53.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 304 DBREF 1RY9 A 1 133 UNP P35530 SPAK_SHIFL 1 133 DBREF 1RY9 B 1 133 UNP P35530 SPAK_SHIFL 1 133 DBREF 1RY9 C 1 133 UNP P35530 SPAK_SHIFL 1 133 DBREF 1RY9 D 1 133 UNP P35530 SPAK_SHIFL 1 133 SEQADV 1RY9 MET A -11 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 ARG A -10 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 GLY A -9 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 SER A -8 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS A -7 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS A -6 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS A -5 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS A -4 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS A -3 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS A -2 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 GLY A -1 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 SER A 0 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 MET B -11 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 ARG B -10 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 GLY B -9 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 SER B -8 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS B -7 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS B -6 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS B -5 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS B -4 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS B -3 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS B -2 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 GLY B -1 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 SER B 0 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 MET C -11 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 ARG C -10 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 GLY C -9 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 SER C -8 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS C -7 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS C -6 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS C -5 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS C -4 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS C -3 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS C -2 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 GLY C -1 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 SER C 0 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 MET D -11 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 ARG D -10 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 GLY D -9 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 SER D -8 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS D -7 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS D -6 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS D -5 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS D -4 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS D -3 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 HIS D -2 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 GLY D -1 UNP P35530 CLONING ARTIFACT SEQADV 1RY9 SER D 0 UNP P35530 CLONING ARTIFACT SEQRES 1 A 145 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 145 SER ASN ILE ASN LEU VAL GLN LEU VAL ARG ASP SER LEU SEQRES 3 A 145 PHE THR ILE GLY CYS PRO PRO SER ILE ILE THR ASP LEU SEQRES 4 A 145 ASP SER HIS SER ALA ILE THR ILE SER LEU ASP SER MET SEQRES 5 A 145 PRO ALA ILE ASN ILE ALA LEU VAL ASN GLU GLN VAL MET SEQRES 6 A 145 LEU TRP ALA ASN PHE ASP ALA PRO SER ASP VAL LYS LEU SEQRES 7 A 145 GLN SER SER ALA TYR ASN ILE LEU ASN LEU MET LEU MET SEQRES 8 A 145 ASN PHE SER TYR SER ILE ASN GLU LEU VAL GLU LEU HIS SEQRES 9 A 145 ARG SER ASP GLU TYR LEU GLN LEU ARG VAL VAL ILE LYS SEQRES 10 A 145 ASP ASP TYR VAL HIS ASP GLY ILE VAL PHE ALA GLU ILE SEQRES 11 A 145 LEU HIS GLU PHE TYR GLN ARG MET GLU ILE LEU ASN GLY SEQRES 12 A 145 VAL LEU SEQRES 1 B 145 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 B 145 SER ASN ILE ASN LEU VAL GLN LEU VAL ARG ASP SER LEU SEQRES 3 B 145 PHE THR ILE GLY CYS PRO PRO SER ILE ILE THR ASP LEU SEQRES 4 B 145 ASP SER HIS SER ALA ILE THR ILE SER LEU ASP SER MET SEQRES 5 B 145 PRO ALA ILE ASN ILE ALA LEU VAL ASN GLU GLN VAL MET SEQRES 6 B 145 LEU TRP ALA ASN PHE ASP ALA PRO SER ASP VAL LYS LEU SEQRES 7 B 145 GLN SER SER ALA TYR ASN ILE LEU ASN LEU MET LEU MET SEQRES 8 B 145 ASN PHE SER TYR SER ILE ASN GLU LEU VAL GLU LEU HIS SEQRES 9 B 145 ARG SER ASP GLU TYR LEU GLN LEU ARG VAL VAL ILE LYS SEQRES 10 B 145 ASP ASP TYR VAL HIS ASP GLY ILE VAL PHE ALA GLU ILE SEQRES 11 B 145 LEU HIS GLU PHE TYR GLN ARG MET GLU ILE LEU ASN GLY SEQRES 12 B 145 VAL LEU SEQRES 1 C 145 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 145 SER ASN ILE ASN LEU VAL GLN LEU VAL ARG ASP SER LEU SEQRES 3 C 145 PHE THR ILE GLY CYS PRO PRO SER ILE ILE THR ASP LEU SEQRES 4 C 145 ASP SER HIS SER ALA ILE THR ILE SER LEU ASP SER MET SEQRES 5 C 145 PRO ALA ILE ASN ILE ALA LEU VAL ASN GLU GLN VAL MET SEQRES 6 C 145 LEU TRP ALA ASN PHE ASP ALA PRO SER ASP VAL LYS LEU SEQRES 7 C 145 GLN SER SER ALA TYR ASN ILE LEU ASN LEU MET LEU MET SEQRES 8 C 145 ASN PHE SER TYR SER ILE ASN GLU LEU VAL GLU LEU HIS SEQRES 9 C 145 ARG SER ASP GLU TYR LEU GLN LEU ARG VAL VAL ILE LYS SEQRES 10 C 145 ASP ASP TYR VAL HIS ASP GLY ILE VAL PHE ALA GLU ILE SEQRES 11 C 145 LEU HIS GLU PHE TYR GLN ARG MET GLU ILE LEU ASN GLY SEQRES 12 C 145 VAL LEU SEQRES 1 D 145 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 D 145 SER ASN ILE ASN LEU VAL GLN LEU VAL ARG ASP SER LEU SEQRES 3 D 145 PHE THR ILE GLY CYS PRO PRO SER ILE ILE THR ASP LEU SEQRES 4 D 145 ASP SER HIS SER ALA ILE THR ILE SER LEU ASP SER MET SEQRES 5 D 145 PRO ALA ILE ASN ILE ALA LEU VAL ASN GLU GLN VAL MET SEQRES 6 D 145 LEU TRP ALA ASN PHE ASP ALA PRO SER ASP VAL LYS LEU SEQRES 7 D 145 GLN SER SER ALA TYR ASN ILE LEU ASN LEU MET LEU MET SEQRES 8 D 145 ASN PHE SER TYR SER ILE ASN GLU LEU VAL GLU LEU HIS SEQRES 9 D 145 ARG SER ASP GLU TYR LEU GLN LEU ARG VAL VAL ILE LYS SEQRES 10 D 145 ASP ASP TYR VAL HIS ASP GLY ILE VAL PHE ALA GLU ILE SEQRES 11 D 145 LEU HIS GLU PHE TYR GLN ARG MET GLU ILE LEU ASN GLY SEQRES 12 D 145 VAL LEU HET CL A 301 1 HET CL A 303 1 HET CL B 302 1 HET CL B 306 1 HET CL C 304 1 HET CL D 305 1 HETNAM CL CHLORIDE ION FORMUL 5 CL 6(CL 1-) FORMUL 11 HOH *235(H2 O) HELIX 1 1 ASN A 3 GLY A 18 1 16 HELIX 2 2 PRO A 20 SER A 22 5 3 HELIX 3 3 SER A 62 LEU A 78 1 17 HELIX 4 4 LYS A 105 VAL A 109 5 5 HELIX 5 5 ASP A 111 LEU A 133 1 23 HELIX 6 6 ASN B 3 GLY B 18 1 16 HELIX 7 7 SER B 62 LEU B 78 1 17 HELIX 8 8 LYS B 105 VAL B 109 5 5 HELIX 9 9 ASP B 111 VAL B 132 1 22 HELIX 10 10 ASN C 3 GLY C 18 1 16 HELIX 11 11 PRO C 20 SER C 22 5 3 HELIX 12 12 SER C 62 LEU C 78 1 17 HELIX 13 13 LYS C 105 VAL C 109 5 5 HELIX 14 14 ASP C 111 LEU C 133 1 23 HELIX 15 15 ASN D 3 GLY D 18 1 16 HELIX 16 16 PRO D 20 SER D 22 5 3 HELIX 17 17 SER D 62 LEU D 78 1 17 HELIX 18 18 LYS D 105 VAL D 109 5 5 HELIX 19 19 ASP D 111 LEU D 133 1 23 SHEET 1 A 6 ILE A 24 ASP A 26 0 SHEET 2 A 6 ILE A 33 LEU A 37 -1 O THR A 34 N THR A 25 SHEET 3 A 6 MET A 40 VAL A 48 -1 O ILE A 45 N ILE A 33 SHEET 4 A 6 GLN A 51 ASP A 59 -1 O GLN A 51 N VAL A 48 SHEET 5 A 6 TYR A 97 ILE A 104 -1 O ILE A 104 N VAL A 52 SHEET 6 A 6 GLU A 90 ARG A 93 -1 N GLU A 90 O ARG A 101 SHEET 1 B 6 ILE B 24 ASP B 26 0 SHEET 2 B 6 ILE B 33 LEU B 37 -1 O THR B 34 N THR B 25 SHEET 3 B 6 MET B 40 VAL B 48 -1 O ILE B 45 N ILE B 33 SHEET 4 B 6 GLN B 51 ASP B 59 -1 O GLN B 51 N VAL B 48 SHEET 5 B 6 TYR B 97 ILE B 104 -1 O LEU B 98 N PHE B 58 SHEET 6 B 6 GLU B 90 SER B 94 -1 N GLU B 90 O ARG B 101 SHEET 1 C 6 ILE C 24 ASP C 26 0 SHEET 2 C 6 ILE C 33 LEU C 37 -1 O THR C 34 N THR C 25 SHEET 3 C 6 MET C 40 VAL C 48 -1 O ILE C 45 N ILE C 33 SHEET 4 C 6 GLN C 51 ASP C 59 -1 O GLN C 51 N VAL C 48 SHEET 5 C 6 TYR C 97 ILE C 104 -1 O ILE C 104 N VAL C 52 SHEET 6 C 6 GLU C 90 ARG C 93 -1 N GLU C 90 O ARG C 101 SHEET 1 D 6 ILE D 24 ASP D 26 0 SHEET 2 D 6 ILE D 33 LEU D 37 -1 O THR D 34 N THR D 25 SHEET 3 D 6 MET D 40 VAL D 48 -1 O ILE D 45 N ILE D 33 SHEET 4 D 6 GLN D 51 ASP D 59 -1 O GLN D 51 N VAL D 48 SHEET 5 D 6 TYR D 97 ILE D 104 -1 O LEU D 98 N PHE D 58 SHEET 6 D 6 GLU D 90 SER D 94 -1 N HIS D 92 O GLN D 99 SITE 1 AC1 1 VAL A 109 SITE 1 AC2 1 VAL C 109 CRYST1 50.878 87.682 58.703 90.00 90.77 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019655 0.000000 0.000264 0.00000 SCALE2 0.000000 0.011405 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017036 0.00000