HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-DEC-03 1RYK TITLE SOLUTION NMR STRUCTURE PROTEIN YJBJ FROM ESCHERICHIA COLI. NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET ET93; ONTARIO CENTRE FOR TITLE 3 STRUCTURAL PROTEOMICS TARGET EC0298_1_69; COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YJBJ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YJBJ, B4045, Z5644, ECS5028, SF4160, S3571; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ALPHA PROTEIN, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 OCSP, NESG, PSI, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.PINEDA-LUCENA,J.LIAO,B.WU,A.YEE,J.R.CORT,M.A.KENNEDY,A.M.EDWARDS, AUTHOR 2 C.H.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 6 22-MAY-24 1RYK 1 REMARK REVDAT 5 02-MAR-22 1RYK 1 REMARK REVDAT 4 24-FEB-09 1RYK 1 VERSN REVDAT 3 25-JAN-05 1RYK 1 AUTHOR KEYWDS REVDAT 2 12-OCT-04 1RYK 1 KEYWDS TITLE REMARK REVDAT 1 24-FEB-04 1RYK 0 SPRSDE 24-FEB-04 1RYK 1JYG JRNL AUTH A.PINEDA-LUCENA,J.LIAO,B.WU,A.YEE,J.R.CORT,M.A.KENNEDY, JRNL AUTH 2 A.M.EDWARDS,C.H.ARROWSMITH JRNL TITL AN NMR APPROACH TO STRUCTURAL PROTEOMICS. JRNL REF PROTEINS V. 47 572 2002 JRNL REFN ISSN 0887-3585 JRNL PMID 11854485 JRNL DOI 10.1002/PROT.10120.ABS REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.1, CNS 1.0 REMARK 3 AUTHORS : DELAGLIO, F (NMRPIPE), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 2036 NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 101 DIHEDRAL ANGLE CONSTRAINTS, 62 HYDROGEN BONDS REMARK 4 REMARK 4 1RYK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000021152. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING, RESTRAINED REMARK 210 MOLECULAR DYNAMIC SIMULATIONS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 6 39.21 -93.05 REMARK 500 1 TRP A 21 -75.75 -94.82 REMARK 500 1 GLU A 33 -60.03 65.44 REMARK 500 1 ASN A 65 -66.89 -103.57 REMARK 500 1 GLU A 66 -1.80 78.04 REMARK 500 2 TRP A 21 -76.28 -102.27 REMARK 500 2 ILE A 32 -70.39 -71.72 REMARK 500 2 GLU A 33 -58.32 66.83 REMARK 500 2 GLU A 66 -1.71 83.85 REMARK 500 3 TRP A 21 -60.77 -105.57 REMARK 500 3 GLU A 33 -60.57 63.82 REMARK 500 3 GLU A 66 -44.44 78.29 REMARK 500 4 ALA A 6 144.98 66.75 REMARK 500 4 TRP A 21 -75.65 -102.46 REMARK 500 4 GLU A 33 -52.01 58.25 REMARK 500 4 ASN A 65 -61.87 -102.93 REMARK 500 4 GLU A 66 -17.93 71.70 REMARK 500 4 ARG A 68 -19.44 -147.36 REMARK 500 5 GLU A 33 -59.91 67.48 REMARK 500 5 GLU A 66 -46.16 78.90 REMARK 500 5 TYR A 67 108.87 -54.62 REMARK 500 5 ARG A 68 -51.47 172.94 REMARK 500 6 GLU A 33 -58.31 66.75 REMARK 500 6 GLU A 66 -2.52 87.49 REMARK 500 6 ARG A 68 -39.10 -157.77 REMARK 500 7 TRP A 21 -76.43 -94.69 REMARK 500 7 ILE A 32 -77.31 -82.33 REMARK 500 7 GLU A 33 -59.73 66.08 REMARK 500 7 GLU A 66 -44.11 78.91 REMARK 500 7 ARG A 68 -75.92 -168.78 REMARK 500 8 GLU A 33 -58.51 67.59 REMARK 500 8 GLU A 66 -31.46 80.36 REMARK 500 8 ARG A 68 -20.95 -148.95 REMARK 500 9 GLU A 33 -58.25 66.03 REMARK 500 9 ASN A 65 -71.52 -104.63 REMARK 500 9 GLU A 66 -3.42 73.31 REMARK 500 9 ARG A 68 -39.11 -154.68 REMARK 500 10 ILE A 32 -71.90 -85.68 REMARK 500 10 GLU A 33 -57.89 50.26 REMARK 500 10 GLU A 66 -1.37 80.56 REMARK 500 10 ARG A 68 -81.13 -139.11 REMARK 500 11 ALA A 6 91.65 -66.64 REMARK 500 11 TRP A 21 -74.62 -113.75 REMARK 500 11 GLU A 33 -57.95 65.58 REMARK 500 11 GLU A 66 -25.53 92.80 REMARK 500 12 ALA A 6 96.28 -48.33 REMARK 500 12 GLN A 20 -63.25 -90.17 REMARK 500 12 THR A 25 -167.35 -127.33 REMARK 500 12 ILE A 32 -81.21 -90.06 REMARK 500 12 GLU A 33 -47.95 54.20 REMARK 500 REMARK 500 THIS ENTRY HAS 78 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5105 RELATED DB: BMRB REMARK 900 RELATED ID: 1JYG RELATED DB: PDB REMARK 900 RELATED ID: ET93 RELATED DB: TARGETDB DBREF 1RYK A 1 69 UNP P68206 YJBJ_ECOLI 1 69 SEQRES 1 A 69 MET ASN LYS ASP GLU ALA GLY GLY ASN TRP LYS GLN PHE SEQRES 2 A 69 LYS GLY LYS VAL LYS GLU GLN TRP GLY LYS LEU THR ASP SEQRES 3 A 69 ASP ASP MET THR ILE ILE GLU GLY LYS ARG ASP GLN LEU SEQRES 4 A 69 VAL GLY LYS ILE GLN GLU ARG TYR GLY TYR GLN LYS ASP SEQRES 5 A 69 GLN ALA GLU LYS GLU VAL VAL ASP TRP GLU THR ARG ASN SEQRES 6 A 69 GLU TYR ARG TRP HELIX 1 1 GLY A 8 TRP A 21 1 14 HELIX 2 2 THR A 25 GLU A 33 1 9 HELIX 3 3 LYS A 35 TYR A 47 1 13 HELIX 4 4 GLN A 50 GLU A 66 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1