HEADER METAL TRANSPORT 23-DEC-03 1RYX TITLE CRYSTAL STRUCTURE OF HEN SERUM TRANSFERRIN IN APO- FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: OVOTRANSFERRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CONALBUMIN, ALLERGEN GAL D 3, GAL D III, SERUM TRANSFERRIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 TISSUE: HEN SERUM KEYWDS HEN SERUM TRANSFERRIN, APO- FORM, DOMAIN ORIENTATION, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.K.DATTAGUPTA,P.G.THAKURTA,D.CHOUDHURY,R.DASGUPTA REVDAT 4 25-OCT-23 1RYX 1 REMARK REVDAT 3 11-JUL-18 1RYX 1 REMARK REVDAT 2 24-FEB-09 1RYX 1 VERSN REVDAT 1 13-JUL-04 1RYX 0 JRNL AUTH P.G.THAKURTA,D.CHOUDHURY,R.DASGUPTA,J.K.DATTAGUPTA JRNL TITL TERTIARY STRUCTURAL CHANGES ASSOCIATED WITH IRON BINDING AND JRNL TITL 2 RELEASE IN HEN SERUM TRANSFERRIN: A CRYSTALLOGRAPHIC AND JRNL TITL 3 SPECTROSCOPIC STUDY JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 316 1124 2004 JRNL REFN ISSN 0006-291X JRNL PMID 15044101 JRNL DOI 10.1016/J.BBRC.2004.02.165 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.GUHA THAKURTA,D.CHOUDHURY,R.DASGUPTA,J.K.DATTAGUPTA REMARK 1 TITL STRUCTURE OF DIFERRIC HEN SERUM TRANSFERRIN AT 2.8 A REMARK 1 TITL 2 RESOLUTION REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 1773 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444903016652 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4475883.760 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 8604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.283 REMARK 3 FREE R VALUE : 0.341 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 444 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.016 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1340 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE : 0.4410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 75 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.051 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4657 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.89000 REMARK 3 B22 (A**2) : 2.89000 REMARK 3 B33 (A**2) : -5.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.58 REMARK 3 ESD FROM SIGMAA (A) : 0.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 20.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.75 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.66 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.290 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE RESIDUES WHOSE SIDE CHAINS COULD NOT BE LOCATED IN THE REMARK 3 ELECTRON DENSITY MAP WERE KEPT AS ALANINE, HOWEVER, THE RESIDUE REMARK 3 NAMES REMAIN REMARK 3 UNALTERED IN THIS PDB FILE. REMARK 4 REMARK 4 1RYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021163. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MAXFLUX CONFOCAL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10753 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1AIV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-23% PEG 6000 IN 0.02M SODIUM REMARK 280 ACETATE BUFFER, PH 5.9, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.83300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.14750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.14750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 133.24950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.14750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.14750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.41650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.14750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.14750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 133.24950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.14750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.14750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.41650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.83300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 2 CG CD REMARK 470 PRO A 3 CG CD REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 VAL A 6 CG1 CG2 REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 12 CG1 CG2 CD1 REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 ASN A 22 CG OD1 ND2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ILE A 32 CG1 CG2 CD1 REMARK 470 THR A 35 OG1 CG2 REMARK 470 VAL A 37 CG1 CG2 REMARK 470 GLN A 38 CG CD OE1 NE2 REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 TYR A 42 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 ASN A 52 CG OD1 ND2 REMARK 470 ASP A 55 CG OD1 OD2 REMARK 470 ILE A 57 CG1 CG2 CD1 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 ILE A 77 CG1 CG2 CD1 REMARK 470 TYR A 82 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 HIS A 84 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 TYR A 92 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 ASP A 108 CG OD1 OD2 REMARK 470 GLN A 110 CG CD OE1 NE2 REMARK 470 LEU A 119 CG CD1 CD2 REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 126 CG OD1 ND2 REMARK 470 ILE A 129 CG1 CG2 CD1 REMARK 470 LEU A 133 CG CD1 CD2 REMARK 470 HIS A 134 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 135 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 140 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 140 CZ3 CH2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 ILE A 143 CG1 CG2 CD1 REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 GLN A 150 CG CD OE1 NE2 REMARK 470 SER A 159 OG REMARK 470 VAL A 161 CG1 CG2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 GLN A 168 CG CD OE1 NE2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 173 CG CD OE1 NE2 REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 TYR A 188 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 HIS A 210 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 220 CG CD OE1 NE2 REMARK 470 ASP A 222 CG OD1 OD2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 LEU A 227 CG CD1 CD2 REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 234 CG CD OE1 NE2 REMARK 470 ASN A 238 CG OD1 ND2 REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 ARG A 255 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 PHE A 266 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 267 CG CD1 CD2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 PHE A 274 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 LEU A 284 CG CD1 CD2 REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 ASP A 292 CG OD1 OD2 REMARK 470 LEU A 295 CG CD1 CD2 REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 ASP A 297 CG OD1 OD2 REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 ARG A 309 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 310 CG1 CG2 REMARK 470 GLU A 323 CG CD OE1 OE2 REMARK 470 TYR A 324 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 ASP A 334 CG OD1 OD2 REMARK 470 GLN A 335 CG CD OE1 NE2 REMARK 470 LEU A 336 CG CD1 CD2 REMARK 470 THR A 337 OG1 CG2 REMARK 470 SER A 339 OG REMARK 470 PRO A 340 CG CD REMARK 470 ARG A 344 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 346 CG CD OE1 NE2 REMARK 470 GLU A 354 CG CD OE1 OE2 REMARK 470 LYS A 355 CG CD CE NZ REMARK 470 LYS A 357 CG CD CE NZ REMARK 470 ARG A 360 CG CD NE CZ NH1 NH2 REMARK 470 SER A 365 OG REMARK 470 GLU A 370 CG CD OE1 OE2 REMARK 470 LYS A 383 CG CD CE NZ REMARK 470 LYS A 386 CG CD CE NZ REMARK 470 VAL A 399 CG1 CG2 REMARK 470 GLU A 413 CG CD OE1 OE2 REMARK 470 ARG A 414 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 415 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 420 CG CD OE1 NE2 REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 THR A 424 OG1 CG2 REMARK 470 ASP A 425 CG OD1 OD2 REMARK 470 GLU A 426 CG CD OE1 OE2 REMARK 470 TYR A 431 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 439 CG CD CE NZ REMARK 470 ASP A 440 CG OD1 OD2 REMARK 470 ASN A 442 CG OD1 ND2 REMARK 470 LYS A 449 CG CD CE NZ REMARK 470 PHE A 480 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 482 CG CD OE1 OE2 REMARK 470 ARG A 497 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 500 CG CD OE1 NE2 REMARK 470 ILE A 508 CG1 CG2 CD1 REMARK 470 HIS A 518 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 521 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 529 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 533 CG CD OE1 OE2 REMARK 470 GLU A 546 CG CD OE1 OE2 REMARK 470 ASN A 548 CG OD1 ND2 REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 ARG A 574 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 581 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 582 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 585 CG OD1 ND2 REMARK 470 GLU A 588 CG CD OE1 OE2 REMARK 470 ARG A 597 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 603 CG CD CE NZ REMARK 470 ARG A 605 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 607 CG CD1 CD2 REMARK 470 ARG A 610 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 611 CG CD OE1 NE2 REMARK 470 ARG A 614 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 621 CG CD OE1 OE2 REMARK 470 MET A 626 CG SD CE REMARK 470 ASN A 632 CG OD1 ND2 REMARK 470 LEU A 635 CG CD1 CD2 REMARK 470 LEU A 636 CG CD1 CD2 REMARK 470 LYS A 642 CG CD CE NZ REMARK 470 PHE A 645 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 648 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 656 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 661 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 669 CG CD CE NZ REMARK 470 GLN A 678 CG CD OE1 NE2 REMARK 470 GLU A 684 CG CD OE1 OE2 REMARK 470 LYS A 686 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 630 N ASN A 632 2.11 REMARK 500 O LYS A 633 OD2 ASP A 639 2.16 REMARK 500 O VAL A 617 N GLY A 619 2.18 REMARK 500 O ILE A 508 N PRO A 510 2.18 REMARK 500 O SER A 147 N GLN A 150 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 20 CA - CB - SG ANGL. DEV. = 9.0 DEGREES REMARK 500 PRO A 71 C - N - CD ANGL. DEV. = -23.5 DEGREES REMARK 500 CYS A 584 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 2 -90.35 -104.34 REMARK 500 PRO A 3 86.70 -160.94 REMARK 500 ILE A 7 150.16 -22.82 REMARK 500 CYS A 10 -154.61 -94.81 REMARK 500 THR A 11 -105.34 -160.78 REMARK 500 ILE A 12 -92.56 157.01 REMARK 500 ARG A 24 -6.93 -46.75 REMARK 500 ASP A 25 -71.21 -82.25 REMARK 500 GLN A 28 -78.55 -46.81 REMARK 500 GLN A 29 64.36 -61.69 REMARK 500 GLU A 30 138.61 176.19 REMARK 500 ARG A 31 -54.21 -14.19 REMARK 500 ILE A 32 -162.01 -120.73 REMARK 500 LEU A 34 -157.71 -122.69 REMARK 500 THR A 35 91.38 157.36 REMARK 500 CYS A 36 -179.12 -48.44 REMARK 500 VAL A 37 138.44 -175.99 REMARK 500 ALA A 40 -35.56 -28.60 REMARK 500 ALA A 48 -33.59 -38.82 REMARK 500 ASN A 52 -1.21 55.65 REMARK 500 GLU A 53 -71.66 -64.11 REMARK 500 ASP A 55 -75.09 -110.01 REMARK 500 ASP A 60 -166.23 -75.27 REMARK 500 PHE A 65 -78.43 -67.64 REMARK 500 ALA A 70 -171.93 -48.91 REMARK 500 PRO A 71 -28.32 54.23 REMARK 500 TYR A 72 -88.46 -128.41 REMARK 500 LYS A 73 97.31 97.18 REMARK 500 ALA A 78 153.45 174.22 REMARK 500 TYR A 82 -146.84 -152.48 REMARK 500 HIS A 84 -154.41 -163.58 REMARK 500 GLU A 86 -81.58 -82.18 REMARK 500 THR A 90 54.10 -145.41 REMARK 500 SER A 91 -143.80 -167.53 REMARK 500 TYR A 92 96.52 153.50 REMARK 500 LYS A 100 -176.73 -53.49 REMARK 500 THR A 102 134.94 -39.32 REMARK 500 THR A 105 -89.65 -108.84 REMARK 500 VAL A 106 -1.93 -175.05 REMARK 500 ASP A 108 19.68 -178.58 REMARK 500 GLN A 110 77.17 -41.79 REMARK 500 LYS A 112 157.67 -36.39 REMARK 500 SER A 122 -72.48 -97.45 REMARK 500 TRP A 125 -77.82 18.53 REMARK 500 ALA A 137 -64.70 -19.28 REMARK 500 GLU A 139 42.08 -89.56 REMARK 500 GLU A 141 -47.05 -155.29 REMARK 500 ILE A 143 -2.61 -42.95 REMARK 500 SER A 145 41.13 -150.27 REMARK 500 SER A 147 103.30 -51.69 REMARK 500 REMARK 500 THIS ENTRY HAS 223 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N04 RELATED DB: PDB REMARK 900 DIFERRIC CHICKEN SERUM TRANSFERRIN AT 2.8 A RESOLUTION. DBREF 1RYX A 1 686 UNP P02789 TRFE_CHICK 20 705 SEQRES 1 A 686 ALA PRO PRO LYS SER VAL ILE ARG TRP CYS THR ILE SER SEQRES 2 A 686 SER PRO GLU GLU LYS LYS CYS ASN ASN LEU ARG ASP LEU SEQRES 3 A 686 THR GLN GLN GLU ARG ILE SER LEU THR CYS VAL GLN LYS SEQRES 4 A 686 ALA THR TYR LEU ASP CYS ILE LYS ALA ILE ALA ASN ASN SEQRES 5 A 686 GLU ALA ASP ALA ILE SER LEU ASP GLY GLY GLN ALA PHE SEQRES 6 A 686 GLU ALA GLY LEU ALA PRO TYR LYS LEU LYS PRO ILE ALA SEQRES 7 A 686 ALA GLU VAL TYR GLU HIS THR GLU GLY SER THR THR SER SEQRES 8 A 686 TYR TYR ALA VAL ALA VAL VAL LYS LYS GLY THR GLU PHE SEQRES 9 A 686 THR VAL ASN ASP LEU GLN GLY LYS THR SER CYS HIS THR SEQRES 10 A 686 GLY LEU GLY ARG SER ALA GLY TRP ASN ILE PRO ILE GLY SEQRES 11 A 686 THR LEU LEU HIS ARG GLY ALA ILE GLU TRP GLU GLY ILE SEQRES 12 A 686 GLU SER GLY SER VAL GLU GLN ALA VAL ALA LYS PHE PHE SEQRES 13 A 686 SER ALA SER CYS VAL PRO GLY ALA THR ILE GLU GLN LYS SEQRES 14 A 686 LEU CYS ARG GLN CYS LYS GLY ASP PRO LYS THR LYS CYS SEQRES 15 A 686 ALA ARG ASN ALA PRO TYR SER GLY TYR SER GLY ALA PHE SEQRES 16 A 686 HIS CYS LEU LYS ASP GLY LYS GLY ASP VAL ALA PHE VAL SEQRES 17 A 686 LYS HIS THR THR VAL ASN GLU ASN ALA PRO ASP GLN LYS SEQRES 18 A 686 ASP GLU TYR GLU LEU LEU CYS LEU ASP GLY SER ARG GLN SEQRES 19 A 686 PRO VAL ASP ASN TYR LYS THR CYS ASN TRP ALA ARG VAL SEQRES 20 A 686 ALA ALA HIS ALA VAL VAL ALA ARG ASP ASP ASN LYS VAL SEQRES 21 A 686 GLU ASP ILE TRP SER PHE LEU SER LYS ALA GLN SER ASP SEQRES 22 A 686 PHE GLY VAL ASP THR LYS SER ASP PHE HIS LEU PHE GLY SEQRES 23 A 686 PRO PRO GLY LYS LYS ASP PRO VAL LEU LYS ASP LEU LEU SEQRES 24 A 686 PHE LYS ASP SER ALA ILE MET LEU LYS ARG VAL PRO SER SEQRES 25 A 686 LEU MET ASP SER GLN LEU TYR LEU GLY PHE GLU TYR TYR SEQRES 26 A 686 SER ALA ILE GLN SER MET ARG LYS ASP GLN LEU THR PRO SEQRES 27 A 686 SER PRO ARG GLU ASN ARG ILE GLN TRP CYS ALA VAL GLY SEQRES 28 A 686 LYS ASP GLU LYS SER LYS CYS ASP ARG TRP SER VAL VAL SEQRES 29 A 686 SER ASN GLY ASP VAL GLU CYS THR VAL VAL ASP GLU THR SEQRES 30 A 686 LYS ASP CYS ILE ILE LYS ILE MET LYS GLY GLU ALA ASP SEQRES 31 A 686 ALA VAL ALA LEU ASP GLY GLY LEU VAL TYR THR ALA GLY SEQRES 32 A 686 VAL CYS GLY LEU VAL PRO VAL MET ALA GLU ARG TYR ASP SEQRES 33 A 686 ASP GLU SER GLN CYS SER LYS THR ASP GLU ARG PRO ALA SEQRES 34 A 686 SER TYR PHE ALA VAL ALA VAL ALA ARG LYS ASP SER ASN SEQRES 35 A 686 VAL ASN TRP ASN ASN LEU LYS GLY LYS LYS SER CYS HIS SEQRES 36 A 686 THR ALA VAL GLY ARG THR ALA GLY TRP VAL ILE PRO MET SEQRES 37 A 686 GLY LEU ILE HIS ASN ARG THR GLY THR CYS ASN PHE ASP SEQRES 38 A 686 GLU TYR PHE SER GLU GLY CYS ALA PRO GLY SER PRO PRO SEQRES 39 A 686 ASN SER ARG LEU CYS GLN LEU CYS GLN GLY SER GLY GLY SEQRES 40 A 686 ILE PRO PRO GLU LYS CYS VAL ALA SER SER HIS GLU LYS SEQRES 41 A 686 TYR PHE GLY TYR THR GLY ALA LEU ARG CYS LEU VAL GLU SEQRES 42 A 686 LYS GLY ASP VAL ALA PHE ILE GLN HIS SER THR VAL GLU SEQRES 43 A 686 GLU ASN THR GLY GLY LYS ASN LYS ALA ASP TRP ALA LYS SEQRES 44 A 686 ASN LEU GLN MET ASP ASP PHE GLU LEU LEU CYS THR ASP SEQRES 45 A 686 GLY ARG ARG ALA ASN VAL MET ASP TYR ARG GLU CYS ASN SEQRES 46 A 686 LEU ALA GLU VAL PRO THR HIS ALA VAL VAL VAL ARG PRO SEQRES 47 A 686 GLU LYS ALA ASN LYS ILE ARG ASP LEU LEU GLU ARG GLN SEQRES 48 A 686 GLU LYS ARG PHE GLY VAL ASN GLY SER GLU LYS SER LYS SEQRES 49 A 686 PHE MET MET PHE GLU SER GLN ASN LYS ASP LEU LEU PHE SEQRES 50 A 686 LYS ASP LEU THR LYS CYS LEU PHE LYS VAL ARG GLU GLY SEQRES 51 A 686 THR THR TYR LYS GLU PHE LEU GLY ASP LYS PHE TYR THR SEQRES 52 A 686 VAL ILE SER SER LEU LYS THR CYS ASN PRO SER ASP ILE SEQRES 53 A 686 LEU GLN MET CYS SER PHE LEU GLU GLY LYS HELIX 1 1 SER A 14 CYS A 20 1 7 HELIX 2 2 LEU A 23 GLN A 29 1 7 HELIX 3 3 THR A 41 ASN A 51 1 11 HELIX 4 4 ASP A 60 GLY A 68 1 9 HELIX 5 5 TRP A 125 GLY A 130 1 6 HELIX 6 6 THR A 131 GLY A 136 1 6 HELIX 7 7 GLY A 142 GLY A 146 5 5 HELIX 8 8 SER A 147 LYS A 154 1 8 HELIX 9 9 TYR A 191 LYS A 199 1 9 HELIX 10 10 THR A 212 ALA A 217 1 6 HELIX 11 11 VAL A 260 GLY A 275 1 16 HELIX 12 12 GLY A 321 MET A 331 1 11 HELIX 13 13 LYS A 378 GLY A 387 1 10 HELIX 14 14 GLY A 397 GLY A 406 1 10 HELIX 15 15 ASN A 444 LEU A 448 5 5 HELIX 16 16 ARG A 460 TRP A 464 5 5 HELIX 17 17 ILE A 466 ILE A 471 1 6 HELIX 18 18 HIS A 472 ARG A 474 5 3 HELIX 19 19 ASN A 479 TYR A 483 5 5 HELIX 20 20 PHE A 522 VAL A 532 1 11 HELIX 21 21 THR A 544 THR A 549 1 6 HELIX 22 22 GLN A 562 ASP A 564 5 3 HELIX 23 23 MET A 579 CYS A 584 5 6 HELIX 24 24 ARG A 605 ARG A 610 1 6 HELIX 25 25 GLY A 619 LYS A 624 5 6 HELIX 26 26 THR A 652 GLY A 658 1 7 HELIX 27 27 LYS A 660 LEU A 668 1 9 HELIX 28 28 SER A 674 GLY A 685 1 12 SHEET 1 A 4 ALA A 56 ILE A 57 0 SHEET 2 A 4 ALA A 251 ALA A 254 -1 O VAL A 253 N ILE A 57 SHEET 3 A 4 LYS A 75 VAL A 81 -1 N LYS A 75 O ALA A 254 SHEET 4 A 4 MET A 306 LEU A 307 -1 N MET A 306 O VAL A 81 SHEET 1 B 2 TYR A 93 ALA A 94 0 SHEET 2 B 2 ALA A 245 ARG A 246 -1 O ALA A 245 N ALA A 94 SHEET 1 C 2 VAL A 392 LEU A 394 0 SHEET 2 C 2 ALA A 593 VAL A 595 -1 O VAL A 595 N VAL A 392 SHEET 1 D 3 PHE A 539 GLN A 541 0 SHEET 2 D 3 ALA A 433 ARG A 438 -1 N VAL A 434 O ILE A 540 SHEET 3 D 3 PHE A 566 LEU A 568 -1 O GLU A 567 N ALA A 437 SHEET 1 E 2 SER A 453 CYS A 454 0 SHEET 2 E 2 GLY A 487 CYS A 488 1 O CYS A 488 N SER A 453 SSBOND 1 CYS A 10 CYS A 45 1555 1555 2.03 SSBOND 2 CYS A 20 CYS A 36 1555 1555 2.05 SSBOND 3 CYS A 115 CYS A 197 1555 1555 2.01 SSBOND 4 CYS A 160 CYS A 174 1555 1555 2.03 SSBOND 5 CYS A 171 CYS A 182 1555 1555 2.03 SSBOND 6 CYS A 228 CYS A 242 1555 1555 2.03 SSBOND 7 CYS A 348 CYS A 380 1555 1555 2.03 SSBOND 8 CYS A 358 CYS A 371 1555 1555 2.03 SSBOND 9 CYS A 405 CYS A 680 1555 1555 2.02 SSBOND 10 CYS A 421 CYS A 643 1555 1555 2.02 SSBOND 11 CYS A 454 CYS A 530 1555 1555 2.01 SSBOND 12 CYS A 478 CYS A 671 1555 1555 2.01 SSBOND 13 CYS A 488 CYS A 502 1555 1555 2.03 SSBOND 14 CYS A 499 CYS A 513 1555 1555 2.02 SSBOND 15 CYS A 570 CYS A 584 1555 1555 2.04 CRYST1 90.295 90.295 177.666 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011075 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011075 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005629 0.00000