HEADER IMMUNE SYSTEM 24-DEC-03 1RZF TITLE CRYSTAL STRUCTURE OF HUMAN ANTI-HIV-1 GP120-REACTIVE ANTIBODY E51 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB E51 LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB E51 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HUMAN HERPESVIRUS 4; SOURCE 6 EXPRESSION_SYSTEM_COMMON: EPSTEIN-BARR VIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10376; SOURCE 8 EXPRESSION_SYSTEM_CELL: IMMORTALIZED B-CELL CLONE FUSED WITH A SOURCE 9 MURINE B-CELL FUSION PARTNER; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HUMAN HERPESVIRUS 4; SOURCE 15 EXPRESSION_SYSTEM_COMMON: EPSTEIN-BARR VIRUS; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 10376; SOURCE 17 EXPRESSION_SYSTEM_CELL: IMMORTALIZED B-CELL CLONE FUSED WITH A SOURCE 18 MURINE B-CELL FUSION PARTNER KEYWDS HIV-1; GP120; CD4I; ANTIBODIES; TYROSINE SULFATION; VH-GENE USAGE, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.C.HUANG,M.VENTURI,S.MAJEED,M.J.MOORE,S.PHOGAT,M.-Y.ZHANG, AUTHOR 2 D.S.DIMITROV,W.A.HENDRICKSON,J.ROBINSON,J.SODROSKI,R.WYATT,H.CHOE, AUTHOR 3 M.FARZAN,P.D.KWONG REVDAT 8 20-NOV-24 1RZF 1 REMARK REVDAT 7 23-AUG-23 1RZF 1 REMARK REVDAT 6 13-JUL-11 1RZF 1 VERSN REVDAT 5 24-FEB-09 1RZF 1 VERSN REVDAT 4 01-FEB-05 1RZF 1 SOURCE REMARK REVDAT 3 16-MAR-04 1RZF 1 JRNL REVDAT 2 09-MAR-04 1RZF 1 JRNL REVDAT 1 03-FEB-04 1RZF 0 JRNL AUTH C.C.HUANG,M.VENTURI,S.MAJEED,M.J.MOORE,S.PHOGAT,M.-Y.ZHANG, JRNL AUTH 2 D.S.DIMITROV,W.A.HENDRICKSON,J.ROBINSON,J.SODROSKI,R.WYATT, JRNL AUTH 3 H.CHOE,M.FARZAN,P.D.KWONG JRNL TITL STRUCTURAL BASIS OF TYROSINE SULFATION AND VH-GENE USAGE IN JRNL TITL 2 ANTIBODIES THAT RECOGNIZE THE HIV TYPE 1 CORECEPTOR-BINDING JRNL TITL 3 SITE ON GP120 JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 2706 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 14981267 JRNL DOI 10.1073/PNAS.0308527100 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 703888.750 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 50304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5064 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7111 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 793 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3187 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : -5.40000 REMARK 3 B33 (A**2) : 5.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.310 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.050 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.060 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.010 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.42 REMARK 3 BSOL : 59.25 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : GCL.PAR REMARK 3 PARAMETER FILE 4 : ISO.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : GCL.TOP REMARK 3 TOPOLOGY FILE 4 : ISO.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR WITH A SAGITTALLY REMARK 200 FOCUSED SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60893 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1RZ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 4000, 7% ISOPROPANOL, 0.07M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.38500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.64000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.80400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.64000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.38500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.80400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU H 1 REMARK 465 GLY H 98A REMARK 465 VAL H 98B REMARK 465 ALA H 98C REMARK 465 ALA H 98D REMARK 465 ALA H 98E REMARK 465 GLY H 98F REMARK 465 ASP H 98G REMARK 465 TYR H 98H REMARK 465 ALA H 98I REMARK 465 ASP H 98J REMARK 465 TYR H 98K REMARK 465 ASP H 98L REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR H 100M CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS L 194 CA - CB - SG ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN L 27B -91.34 -110.14 REMARK 500 ASN L 51 -48.54 71.91 REMARK 500 ASP L 152 -111.02 65.02 REMARK 500 ASP H 144 74.05 39.34 REMARK 500 THR H 191 -65.63 -140.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 9002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 9003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 9004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 9005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 9010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 9011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 9012 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 9013 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA L 7001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA L 7002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 9006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 9007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 9008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 9009 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RZ7 RELATED DB: PDB REMARK 900 RELATED ID: 1RZ8 RELATED DB: PDB REMARK 900 RELATED ID: 1RZG RELATED DB: PDB REMARK 900 RELATED ID: 1RZI RELATED DB: PDB REMARK 900 RELATED ID: 1RZJ RELATED DB: PDB REMARK 900 RELATED ID: 1RZK RELATED DB: PDB DBREF 1RZF L 2 210 PDB 1RZF 1RZF 2 210 DBREF 1RZF H 1 214 PDB 1RZF 1RZF 1 214 SEQRES 1 L 213 GLN SER ILE LEU THR GLN PRO PRO SER VAL SER ALA ALA SEQRES 2 L 213 PRO GLY GLN LYS VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 L 213 SER ASN ILE GLY ASN ASN ASP VAL SER TRP TYR GLN GLN SEQRES 4 L 213 PHE PRO GLY THR VAL PRO LYS LEU VAL ILE TYR GLU ASN SEQRES 5 L 213 ASN GLU ARG PRO SER GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 213 SER LYS SER GLY THR SER ALA THR LEU GLY ILE THR GLY SEQRES 7 L 213 LEU GLN THR GLY ASP GLU ALA ASP TYR TYR CYS GLY THR SEQRES 8 L 213 TRP ASP SER SER LEU SER ALA VAL VAL PHE GLY GLY GLY SEQRES 9 L 213 SER LYS VAL THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 L 213 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 213 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 213 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 213 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 213 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 213 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 213 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 213 THR VAL ALA PRO THR SEQRES 1 H 235 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL ASN LYS SEQRES 2 H 235 PRO GLY SER SER VAL LYS VAL SER CYS GLN ALA SER GLY SEQRES 3 H 235 ALA THR LEU ASN SER HIS ALA PHE SER TRP VAL ARG GLN SEQRES 4 H 235 ALA PRO GLY GLN GLY LEU GLU TRP MET ALA GLY ILE ILE SEQRES 5 H 235 PRO ILE PHE GLY SER SER HIS TYR ALA GLN LYS PHE ARG SEQRES 6 H 235 GLY ARG VAL THR ILE SER ALA ASP GLU SER THR ARG THR SEQRES 7 H 235 VAL TYR LEU HIS LEU ARG GLY LEU ARG SER ASP ASP THR SEQRES 8 H 235 ALA VAL TYR TYR CYS ALA SER ASN SER ILE ALA GLY VAL SEQRES 9 H 235 ALA ALA ALA GLY ASP TYR ALA ASP TYR ASP GLY GLY TYR SEQRES 10 H 235 TYR TYR ASP MET ASP VAL TRP GLY GLN GLY THR THR VAL SEQRES 11 H 235 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 12 H 235 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 13 H 235 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 14 H 235 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 15 H 235 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 16 H 235 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 17 H 235 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 18 H 235 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 19 H 235 LYS HET GOL L9001 6 HET GOL L9002 6 HET GOL L9003 6 HET GOL L9004 6 HET GOL L9005 6 HET GOL L9010 6 HET GOL L9011 6 HET GOL L9012 6 HET GOL L9013 6 HET IPA L7001 4 HET IPA L7002 4 HET GOL H9006 6 HET GOL H9007 6 HET GOL H9008 6 HET GOL H9009 6 HETNAM GOL GLYCEROL HETNAM IPA ISOPROPYL ALCOHOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPA 2-PROPANOL FORMUL 3 GOL 13(C3 H8 O3) FORMUL 12 IPA 2(C3 H8 O) FORMUL 18 HOH *333(H2 O) HELIX 1 1 GLN L 79 GLU L 83 5 5 HELIX 2 2 SER L 122 ALA L 128 1 7 HELIX 3 3 THR L 182 HIS L 189 1 8 HELIX 4 4 PRO H 52A GLY H 55 5 4 HELIX 5 5 GLN H 61 ARG H 64 5 4 HELIX 6 6 ARG H 83 THR H 87 5 5 HELIX 7 7 SER H 156 ALA H 158 5 3 HELIX 8 8 SER H 187 THR H 191 5 5 HELIX 9 9 LYS H 201 ASN H 204 5 4 SHEET 1 A 5 SER L 10 ALA L 13 0 SHEET 2 A 5 SER L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 A 5 ASP L 85 ASP L 92 -1 N TYR L 86 O SER L 102 SHEET 4 A 5 VAL L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 A 5 LYS L 45 ILE L 48 -1 O LYS L 45 N GLN L 37 SHEET 1 B 4 SER L 10 ALA L 13 0 SHEET 2 B 4 SER L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 B 4 ASP L 85 ASP L 92 -1 N TYR L 86 O SER L 102 SHEET 4 B 4 ALA L 95B PHE L 98 -1 O VAL L 97 N THR L 90 SHEET 1 C 3 VAL L 19 SER L 24 0 SHEET 2 C 3 SER L 70 ILE L 75 -1 O ALA L 71 N CYS L 23 SHEET 3 C 3 PHE L 62 SER L 67 -1 N SER L 63 O GLY L 74 SHEET 1 D 4 SER L 115 PHE L 119 0 SHEET 2 D 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 D 4 TYR L 173 LEU L 181 -1 O SER L 177 N CYS L 135 SHEET 4 D 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 E 4 SER L 115 PHE L 119 0 SHEET 2 E 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 E 4 TYR L 173 LEU L 181 -1 O SER L 177 N CYS L 135 SHEET 4 E 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 F 4 SER L 154 PRO L 155 0 SHEET 2 F 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 F 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 148 SHEET 4 F 4 SER L 201 VAL L 207 -1 O SER L 201 N HIS L 198 SHEET 1 G 4 LEU H 4 GLN H 6 0 SHEET 2 G 4 VAL H 18 ALA H 24 -1 O GLN H 23 N VAL H 5 SHEET 3 G 4 THR H 77 LEU H 82 -1 O VAL H 78 N CYS H 22 SHEET 4 G 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 H 6 GLU H 10 ASN H 12 0 SHEET 2 H 6 THR H 107 VAL H 111 1 O THR H 110 N ASN H 12 SHEET 3 H 6 ALA H 88 SER H 96 -1 N TYR H 90 O THR H 107 SHEET 4 H 6 HIS H 32 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 H 6 LEU H 45 ILE H 52 -1 O ILE H 51 N PHE H 34 SHEET 6 H 6 SER H 56 TYR H 59 -1 O SER H 56 N ILE H 52 SHEET 1 I 4 GLU H 10 ASN H 12 0 SHEET 2 I 4 THR H 107 VAL H 111 1 O THR H 110 N ASN H 12 SHEET 3 I 4 ALA H 88 SER H 96 -1 N TYR H 90 O THR H 107 SHEET 4 I 4 VAL H 102 TRP H 103 -1 O VAL H 102 N SER H 94 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 J 4 TYR H 176 PRO H 185 -1 O VAL H 182 N LEU H 138 SHEET 4 J 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 K 4 SER H 120 LEU H 124 0 SHEET 2 K 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 K 4 TYR H 176 PRO H 185 -1 O VAL H 182 N LEU H 138 SHEET 4 K 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 L 3 THR H 151 TRP H 154 0 SHEET 2 L 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 L 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.01 SSBOND 2 CYS L 135 CYS L 194 1555 1555 2.06 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.00 SSBOND 4 CYS H 140 CYS H 196 1555 1555 2.03 CISPEP 1 TYR L 141 PRO L 142 0 0.13 CISPEP 2 PHE H 146 PRO H 147 0 -0.24 CISPEP 3 GLU H 148 PRO H 149 0 0.28 SITE 1 AC1 7 LYS H 209 ALA L 113 HIS L 198 SER L 201 SITE 2 AC1 7 HOH L9050 HOH L9054 HOH L9154 SITE 1 AC2 7 GLN L 37 LYS L 45 PRO L 59 ARG L 61 SITE 2 AC2 7 PHE L 62 GLY L 81 ASP L 82 SITE 1 AC3 6 THR H 183 SER L 115 THR L 117 LEU L 136 SITE 2 AC3 6 ILE L 137 SER L 138 SITE 1 AC4 7 THR L 105 VAL L 106 LEU L 107 GLY L 108 SITE 2 AC4 7 GLN L 109 LYS L 111 PRO L 142 SITE 1 AC5 7 ALA L 144 VAL L 145 THR L 146 THR L 197 SITE 2 AC5 7 GLU L 199 GLY L 200 HOH L9061 SITE 1 AC6 10 SER H 172 ARG L 54 PRO L 55 SER L 56 SITE 2 AC6 10 GLY L 57 ILE L 58 GLY L 159 VAL L 160 SITE 3 AC6 10 GLU L 161 HOH L9159 SITE 1 AC7 4 PRO L 110 TYR L 141 ASN L 171 HOH L9067 SITE 1 AC8 7 ILE H 53 SER L 65 LYS L 66 SER L 67 SITE 2 AC8 7 SER L 70 ALA L 71 THR L 72 SITE 1 AC9 7 PHE H 54 LYS L 18 THR L 20 SER L 63 SITE 2 AC9 7 GLY L 64 SER L 65 HOH L9106 SITE 1 BC1 2 GLN L 38 GLY L 41 SITE 1 BC2 5 GLN H 43 GLY H 44 ASP L 85 TYR L 87 SITE 2 BC2 5 GLY L 100 SITE 1 BC3 10 GLY H 100L TYR H 100O ASP H 100P HOH H9020 SITE 2 BC3 10 ASP L 32 SER L 34 TYR L 36 GLY L 89 SITE 3 BC3 10 THR L 90 VAL L 96 SITE 1 BC4 7 SER H 120 VAL H 121 LYS H 209 HOH H9166 SITE 2 BC4 7 SER L 201 VAL L 203 HOH L9054 SITE 1 BC5 7 ARG H 38 GLN H 39 ALA H 40 GLN H 43 SITE 2 BC5 7 GLY H 44 GLU H 46 HOH H9062 SITE 1 BC6 5 LEU H 45 GLU H 46 HOH H9010 HOH H9014 SITE 2 BC6 5 HOH H9108 CRYST1 64.770 71.608 99.280 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015439 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010073 0.00000