HEADER TRANSFERASE 24-DEC-03 1RZM TITLE CRYSTAL STRUCTURE OF 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE TITLE 2 SYNTHASE (DAHPS) FROM THERMOTOGA MARITIMA COMPLEXED WITH CD2+, PEP TITLE 3 AND E4P COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHO-2- KETO-3-DEOXYHEPTONATE ALDOLASE, DAHP SYNTHETASE, COMPND 5 3-DEOXY-D-ARABINO- HEPTULOSONATE 7-PHOSPHATE SYNTHASE; COMPND 6 EC: 2.5.1.54; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: AROF, TM0343; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7-AROG KEYWDS (BETA/ALPHA) BARREL, TIM BARREL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.A.SHUMILIN,R.BAUERLE,J.WU,R.W.WOODARD,R.H.KRETSINGER REVDAT 4 23-AUG-23 1RZM 1 REMARK LINK REVDAT 3 13-JUL-11 1RZM 1 VERSN REVDAT 2 24-FEB-09 1RZM 1 VERSN REVDAT 1 10-AUG-04 1RZM 0 JRNL AUTH I.A.SHUMILIN,R.BAUERLE,J.WU,R.W.WOODARD,R.H.KRETSINGER JRNL TITL CRYSTAL STRUCTURE OF THE REACTION COMPLEX OF JRNL TITL 2 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM JRNL TITL 3 THERMOTOGA MARITIMA REFINES THE CATALYTIC MECHANISM AND JRNL TITL 4 INDICATES A NEW MECHANISM OF ALLOSTERIC REGULATION. JRNL REF J.MOL.BIOL. V. 341 455 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15276836 JRNL DOI 10.1016/J.JMB.2004.05.077 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1870 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2831 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37384 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1FWW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, LICL, BIS-TRIS PROPANE, REMARK 280 CDCL2, PEP, E4P, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.52850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.52850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.79050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.10750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.79050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.10750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.52850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.79050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.10750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.52850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.79050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.10750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.58100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 70.52850 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A8019 LIES ON A SPECIAL POSITION. REMARK 375 HOH B9014 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 7 C - N - CA ANGL. DEV. = 11.9 DEGREES REMARK 500 PRO B 7 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 7 -20.93 -28.90 REMARK 500 THR A 10 -157.93 -97.70 REMARK 500 GLU A 35 -71.16 -137.07 REMARK 500 LEU A 66 20.17 -63.36 REMARK 500 LYS A 70 -62.92 -123.69 REMARK 500 ASN A 92 -128.11 39.43 REMARK 500 PRO B 7 7.47 -38.51 REMARK 500 ASN B 92 -135.04 47.56 REMARK 500 ASP B 251 79.60 -100.84 REMARK 500 PRO B 303 -37.99 -36.94 REMARK 500 ASP B 309 62.90 38.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A8001 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 102 SG REMARK 620 2 HIS A 272 NE2 170.1 REMARK 620 3 GLU A 298 OE1 96.6 86.2 REMARK 620 4 GLU A 298 OE2 88.2 87.0 45.8 REMARK 620 5 ASP A 309 OD2 82.7 106.6 94.4 137.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B9009 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 115 NE2 REMARK 620 2 GLU A 119 OE1 81.7 REMARK 620 3 GLU A 119 OE2 97.4 49.9 REMARK 620 4 HIS B 115 NE2 168.8 105.6 81.5 REMARK 620 5 GLU B 119 OE2 83.6 115.6 164.7 100.4 REMARK 620 6 GLU B 119 OE1 106.9 77.5 117.4 83.2 48.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B9001 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 102 SG REMARK 620 2 HIS B 272 NE2 166.2 REMARK 620 3 GLU B 298 OE1 96.8 87.5 REMARK 620 4 GLU B 298 OE2 93.2 80.3 46.1 REMARK 620 5 ASP B 309 OD2 91.1 101.7 93.8 139.9 REMARK 620 6 E4P B9003 O1 61.6 112.9 158.3 127.2 89.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 8001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 9009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEP A 8002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEP B 9002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E4P A 8003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E4P B 9003 DBREF 1RZM A 1 338 UNP Q9WYH8 AROF_THEMA 1 338 DBREF 1RZM B 1 338 UNP Q9WYH8 AROF_THEMA 1 338 SEQRES 1 A 338 MET ILE VAL VAL LEU LYS PRO GLY SER THR GLU GLU ASP SEQRES 2 A 338 ILE ARG LYS VAL VAL LYS LEU ALA GLU SER TYR ASN LEU SEQRES 3 A 338 LYS CYS HIS ILE SER LYS GLY GLN GLU ARG THR VAL ILE SEQRES 4 A 338 GLY ILE ILE GLY ASP ASP ARG TYR VAL VAL ALA ASP LYS SEQRES 5 A 338 PHE GLU SER LEU ASP CYS VAL GLU SER VAL VAL ARG VAL SEQRES 6 A 338 LEU LYS PRO TYR LYS LEU VAL SER ARG GLU PHE HIS PRO SEQRES 7 A 338 GLU ASP THR VAL ILE ASP LEU GLY ASP VAL LYS ILE GLY SEQRES 8 A 338 ASN GLY TYR PHE THR ILE ILE ALA GLY PRO CYS SER VAL SEQRES 9 A 338 GLU GLY ARG GLU MET LEU MET GLU THR ALA HIS PHE LEU SEQRES 10 A 338 SER GLU LEU GLY VAL LYS VAL LEU ARG GLY GLY ALA TYR SEQRES 11 A 338 LYS PRO ARG THR SER PRO TYR SER PHE GLN GLY LEU GLY SEQRES 12 A 338 GLU LYS GLY LEU GLU TYR LEU ARG GLU ALA ALA ASP LYS SEQRES 13 A 338 TYR GLY MET TYR VAL VAL THR GLU ALA LEU GLY GLU ASP SEQRES 14 A 338 ASP LEU PRO LYS VAL ALA GLU TYR ALA ASP ILE ILE GLN SEQRES 15 A 338 ILE GLY ALA ARG ASN ALA GLN ASN PHE ARG LEU LEU SER SEQRES 16 A 338 LYS ALA GLY SER TYR ASN LYS PRO VAL LEU LEU LYS ARG SEQRES 17 A 338 GLY PHE MET ASN THR ILE GLU GLU PHE LEU LEU SER ALA SEQRES 18 A 338 GLU TYR ILE ALA ASN SER GLY ASN THR LYS ILE ILE LEU SEQRES 19 A 338 CYS GLU ARG GLY ILE ARG THR PHE GLU LYS ALA THR ARG SEQRES 20 A 338 ASN THR LEU ASP ILE SER ALA VAL PRO ILE ILE ARG LYS SEQRES 21 A 338 GLU SER HIS LEU PRO ILE LEU VAL ASP PRO SER HIS SER SEQRES 22 A 338 GLY GLY ARG ARG ASP LEU VAL ILE PRO LEU SER ARG ALA SEQRES 23 A 338 ALA ILE ALA VAL GLY ALA HIS GLY ILE ILE VAL GLU VAL SEQRES 24 A 338 HIS PRO GLU PRO GLU LYS ALA LEU SER ASP GLY LYS GLN SEQRES 25 A 338 SER LEU ASP PHE GLU LEU PHE LYS GLU LEU VAL GLN GLU SEQRES 26 A 338 MET LYS LYS LEU ALA ASP ALA LEU GLY VAL LYS VAL ASN SEQRES 1 B 338 MET ILE VAL VAL LEU LYS PRO GLY SER THR GLU GLU ASP SEQRES 2 B 338 ILE ARG LYS VAL VAL LYS LEU ALA GLU SER TYR ASN LEU SEQRES 3 B 338 LYS CYS HIS ILE SER LYS GLY GLN GLU ARG THR VAL ILE SEQRES 4 B 338 GLY ILE ILE GLY ASP ASP ARG TYR VAL VAL ALA ASP LYS SEQRES 5 B 338 PHE GLU SER LEU ASP CYS VAL GLU SER VAL VAL ARG VAL SEQRES 6 B 338 LEU LYS PRO TYR LYS LEU VAL SER ARG GLU PHE HIS PRO SEQRES 7 B 338 GLU ASP THR VAL ILE ASP LEU GLY ASP VAL LYS ILE GLY SEQRES 8 B 338 ASN GLY TYR PHE THR ILE ILE ALA GLY PRO CYS SER VAL SEQRES 9 B 338 GLU GLY ARG GLU MET LEU MET GLU THR ALA HIS PHE LEU SEQRES 10 B 338 SER GLU LEU GLY VAL LYS VAL LEU ARG GLY GLY ALA TYR SEQRES 11 B 338 LYS PRO ARG THR SER PRO TYR SER PHE GLN GLY LEU GLY SEQRES 12 B 338 GLU LYS GLY LEU GLU TYR LEU ARG GLU ALA ALA ASP LYS SEQRES 13 B 338 TYR GLY MET TYR VAL VAL THR GLU ALA LEU GLY GLU ASP SEQRES 14 B 338 ASP LEU PRO LYS VAL ALA GLU TYR ALA ASP ILE ILE GLN SEQRES 15 B 338 ILE GLY ALA ARG ASN ALA GLN ASN PHE ARG LEU LEU SER SEQRES 16 B 338 LYS ALA GLY SER TYR ASN LYS PRO VAL LEU LEU LYS ARG SEQRES 17 B 338 GLY PHE MET ASN THR ILE GLU GLU PHE LEU LEU SER ALA SEQRES 18 B 338 GLU TYR ILE ALA ASN SER GLY ASN THR LYS ILE ILE LEU SEQRES 19 B 338 CYS GLU ARG GLY ILE ARG THR PHE GLU LYS ALA THR ARG SEQRES 20 B 338 ASN THR LEU ASP ILE SER ALA VAL PRO ILE ILE ARG LYS SEQRES 21 B 338 GLU SER HIS LEU PRO ILE LEU VAL ASP PRO SER HIS SER SEQRES 22 B 338 GLY GLY ARG ARG ASP LEU VAL ILE PRO LEU SER ARG ALA SEQRES 23 B 338 ALA ILE ALA VAL GLY ALA HIS GLY ILE ILE VAL GLU VAL SEQRES 24 B 338 HIS PRO GLU PRO GLU LYS ALA LEU SER ASP GLY LYS GLN SEQRES 25 B 338 SER LEU ASP PHE GLU LEU PHE LYS GLU LEU VAL GLN GLU SEQRES 26 B 338 MET LYS LYS LEU ALA ASP ALA LEU GLY VAL LYS VAL ASN HET CD A8001 1 HET PEP A8002 10 HET E4P A8003 12 HET CD B9001 1 HET CD B9009 1 HET PEP B9002 10 HET E4P B9003 12 HETNAM CD CADMIUM ION HETNAM PEP PHOSPHOENOLPYRUVATE HETNAM E4P ERYTHOSE-4-PHOSPHATE FORMUL 3 CD 3(CD 2+) FORMUL 4 PEP 2(C3 H5 O6 P) FORMUL 5 E4P 2(C4 H9 O7 P) FORMUL 10 HOH *159(H2 O) HELIX 1 1 GLU A 11 TYR A 24 1 14 HELIX 2 2 GLY A 43 VAL A 48 5 6 HELIX 3 3 VAL A 49 SER A 55 1 7 HELIX 4 4 GLY A 106 GLU A 119 1 14 HELIX 5 5 GLY A 143 GLY A 158 1 16 HELIX 6 6 ASP A 170 ALA A 178 1 9 HELIX 7 7 GLY A 184 ALA A 188 5 5 HELIX 8 8 ASN A 190 TYR A 200 1 11 HELIX 9 9 THR A 213 ASN A 226 1 14 HELIX 10 10 SER A 253 SER A 262 1 10 HELIX 11 11 ARG A 276 ASP A 278 5 3 HELIX 12 12 LEU A 279 VAL A 290 1 12 HELIX 13 13 GLU A 302 ALA A 306 5 5 HELIX 14 14 ASP A 315 GLY A 334 1 20 HELIX 15 15 THR B 10 GLU B 22 1 13 HELIX 16 16 SER B 23 ASN B 25 5 3 HELIX 17 17 VAL B 49 SER B 55 1 7 HELIX 18 18 ARG B 107 GLU B 119 1 13 HELIX 19 19 GLY B 143 TYR B 157 1 15 HELIX 20 20 ASP B 170 ALA B 178 1 9 HELIX 21 21 GLY B 184 ALA B 188 5 5 HELIX 22 22 ASN B 190 GLY B 198 1 9 HELIX 23 23 THR B 213 SER B 227 1 15 HELIX 24 24 SER B 253 SER B 262 1 10 HELIX 25 25 ASP B 269 GLY B 275 1 7 HELIX 26 26 ARG B 276 ASP B 278 5 3 HELIX 27 27 LEU B 279 GLY B 291 1 13 HELIX 28 28 GLU B 302 ALA B 306 5 5 HELIX 29 29 ASP B 315 GLY B 334 1 20 SHEET 1 A 4 LYS A 27 LYS A 32 0 SHEET 2 A 4 THR A 37 ILE A 42 -1 O ILE A 42 N LYS A 27 SHEET 3 A 4 ILE A 2 LEU A 5 -1 N VAL A 3 O ILE A 39 SHEET 4 A 4 VAL A 59 VAL A 63 -1 O VAL A 63 N ILE A 2 SHEET 1 B 2 ILE A 83 ASP A 84 0 SHEET 2 B 2 LYS A 89 ILE A 90 -1 O ILE A 90 N ILE A 83 SHEET 1 C10 LYS A 336 ASN A 338 0 SHEET 2 C10 TYR A 94 GLY A 100 1 N PHE A 95 O LYS A 336 SHEET 3 C10 GLY A 294 GLU A 298 1 O ILE A 295 N ILE A 98 SHEET 4 C10 ILE A 266 VAL A 268 1 N VAL A 268 O GLY A 294 SHEET 5 C10 ILE A 232 GLU A 236 1 N LEU A 234 O LEU A 267 SHEET 6 C10 VAL A 204 LYS A 207 1 N VAL A 204 O ILE A 233 SHEET 7 C10 ILE A 180 ILE A 183 1 N ILE A 181 O LEU A 205 SHEET 8 C10 TYR A 160 GLU A 164 1 N THR A 163 O GLN A 182 SHEET 9 C10 VAL A 124 ARG A 126 1 N LEU A 125 O TYR A 160 SHEET 10 C10 TYR A 94 GLY A 100 1 N ALA A 99 O ARG A 126 SHEET 1 D 4 LYS B 27 LYS B 32 0 SHEET 2 D 4 THR B 37 ILE B 42 -1 O GLY B 40 N HIS B 29 SHEET 3 D 4 ILE B 2 LEU B 5 -1 N LEU B 5 O THR B 37 SHEET 4 D 4 VAL B 59 VAL B 63 -1 O VAL B 63 N ILE B 2 SHEET 1 E 2 ILE B 83 ASP B 84 0 SHEET 2 E 2 LYS B 89 ILE B 90 -1 O ILE B 90 N ILE B 83 SHEET 1 F10 LYS B 336 ASN B 338 0 SHEET 2 F10 TYR B 94 GLY B 100 1 N ILE B 97 O ASN B 338 SHEET 3 F10 GLY B 294 GLU B 298 1 O VAL B 297 N ILE B 98 SHEET 4 F10 ILE B 266 VAL B 268 1 N VAL B 268 O GLY B 294 SHEET 5 F10 ILE B 232 GLU B 236 1 N GLU B 236 O LEU B 267 SHEET 6 F10 VAL B 204 LYS B 207 1 N VAL B 204 O ILE B 233 SHEET 7 F10 ILE B 180 ILE B 183 1 N ILE B 181 O LEU B 205 SHEET 8 F10 TYR B 160 GLU B 164 1 N THR B 163 O GLN B 182 SHEET 9 F10 VAL B 124 ARG B 126 1 N LEU B 125 O TYR B 160 SHEET 10 F10 TYR B 94 GLY B 100 1 N ALA B 99 O VAL B 124 LINK SG CYS A 102 CD CD A8001 1555 1555 2.69 LINK NE2 HIS A 115 CD CD B9009 5545 1555 2.24 LINK OE1 GLU A 119 CD CD B9009 5545 1555 2.77 LINK OE2 GLU A 119 CD CD B9009 5545 1555 2.37 LINK NE2 HIS A 272 CD CD A8001 1555 1555 2.35 LINK OE1 GLU A 298 CD CD A8001 1555 1555 3.04 LINK OE2 GLU A 298 CD CD A8001 1555 1555 2.47 LINK OD2 ASP A 309 CD CD A8001 1555 1555 2.36 LINK SG CYS B 102 CD CD B9001 1555 1555 2.74 LINK NE2 HIS B 115 CD CD B9009 1555 1555 2.25 LINK OE2 GLU B 119 CD CD B9009 1555 1555 2.39 LINK OE1 GLU B 119 CD CD B9009 1555 1555 2.87 LINK NE2 HIS B 272 CD CD B9001 1555 1555 2.35 LINK OE1 GLU B 298 CD CD B9001 1555 1555 3.00 LINK OE2 GLU B 298 CD CD B9001 1555 1555 2.45 LINK OD2 ASP B 309 CD CD B9001 1555 1555 2.46 LINK CD CD B9001 O1 E4P B9003 1555 1555 2.91 SITE 1 AC1 4 CYS A 102 HIS A 272 GLU A 298 ASP A 309 SITE 1 AC2 5 CYS B 102 HIS B 272 GLU B 298 ASP B 309 SITE 2 AC2 5 E4P B9003 SITE 1 AC3 4 HIS A 115 GLU A 119 HIS B 115 GLU B 119 SITE 1 AC4 13 ARG A 126 LYS A 131 GLN A 182 GLY A 184 SITE 2 AC4 13 ALA A 185 ARG A 186 LYS A 207 ARG A 237 SITE 3 AC4 13 HIS A 272 E4P A8003 HOH A8015 HOH A8018 SITE 4 AC4 13 HOH A8061 SITE 1 AC5 13 ARG B 126 LYS B 131 GLN B 182 GLY B 184 SITE 2 AC5 13 ALA B 185 ARG B 186 LYS B 207 ARG B 237 SITE 3 AC5 13 HIS B 272 E4P B9003 HOH B9023 HOH B9036 SITE 4 AC5 13 HOH B9038 SITE 1 AC6 10 LYS A 131 PRO A 132 ARG A 133 THR A 134 SITE 2 AC6 10 ARG A 186 SER A 308 ASP A 309 PEP A8002 SITE 3 AC6 10 HOH A8025 HOH A8055 SITE 1 AC7 11 CYS B 102 LYS B 131 PRO B 132 ARG B 133 SITE 2 AC7 11 THR B 134 ARG B 186 SER B 308 ASP B 309 SITE 3 AC7 11 CD B9001 PEP B9002 HOH B9049 CRYST1 71.581 144.215 141.057 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013970 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007089 0.00000