HEADER DNA BINDING PROTEIN 24-DEC-03 1RZN TITLE CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN-RELATED FACTOR A FROM TITLE 2 BACILLUS SUBTILIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECOMBINATION PROTEIN U; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN-RELATED FACTOR A, PBP RELATED COMPND 5 FACTOR A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: RECU, PRFA, BSU22310; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPAIR, DNA RECOMBINATION, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,S.C.ALMO,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 14-FEB-24 1RZN 1 REMARK REVDAT 4 03-FEB-21 1RZN 1 AUTHOR REVDAT 3 24-FEB-09 1RZN 1 VERSN REVDAT 2 25-JAN-05 1RZN 1 AUTHOR KEYWDS REMARK REVDAT 1 30-NOV-04 1RZN 0 JRNL AUTH U.A.RAMAGOPAL,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN-RELATED JRNL TITL 2 FACTOR A FROM BACILLUS SUBTILIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 17959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 969 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1044 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1530 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.2030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2527 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.268 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.915 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2589 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2233 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3491 ; 2.186 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5240 ; 1.053 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 7.668 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2840 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 548 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 502 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2497 ; 0.251 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1419 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 90 ; 0.199 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 1 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.271 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1496 ; 3.210 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2429 ; 5.005 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1093 ; 6.017 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1062 ; 8.167 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 33 A 55 5 REMARK 3 1 B 33 B 55 5 REMARK 3 2 A 112 A 145 5 REMARK 3 2 B 112 B 145 5 REMARK 3 3 A 165 A 197 5 REMARK 3 3 B 165 B 197 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 535 ; 0.20 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 882 ; 0.55 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 535 ; 4.07 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 882 ; 6.76 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000021183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-03; 10-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X9B; X6A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.54000; 1.28322 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111); NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17965 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.302 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXD, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, TRIS/HCL, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.87333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.93667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.90500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.96833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 129.84167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 ARG A 2 REMARK 465 TYR A 3 REMARK 465 PRO A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 LYS A 7 REMARK 465 THR A 8 REMARK 465 PHE A 9 REMARK 465 GLN A 10 REMARK 465 PRO A 11 REMARK 465 LYS A 12 REMARK 465 HIS A 13 REMARK 465 SER A 14 REMARK 465 VAL A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 GLN A 18 REMARK 465 ASN A 19 REMARK 465 SER A 20 REMARK 465 GLN A 21 REMARK 465 LYS A 22 REMARK 465 ARG A 23 REMARK 465 ALA A 24 REMARK 465 PRO A 25 REMARK 465 SER A 26 REMARK 465 TYR A 27 REMARK 465 SER A 28 REMARK 465 ASN A 29 REMARK 465 ARG A 30 REMARK 465 GLY A 31 REMARK 465 MET A 32 REMARK 465 VAL A 63 REMARK 465 ASN A 64 REMARK 465 VAL A 65 REMARK 465 HIS A 66 REMARK 465 TYR A 67 REMARK 465 PRO A 68 REMARK 465 LYS A 69 REMARK 465 ARG A 70 REMARK 465 SER A 71 REMARK 465 ALA A 72 REMARK 465 ALA A 73 REMARK 465 VAL A 74 REMARK 465 ILE A 75 REMARK 465 LYS A 76 REMARK 465 GLU A 77 REMARK 465 SER A 198 REMARK 465 PRO A 199 REMARK 465 SER A 200 REMARK 465 SER A 201 REMARK 465 GLY A 202 REMARK 465 ALA A 203 REMARK 465 LYS A 204 REMARK 465 GLY A 205 REMARK 465 ILE B 1 REMARK 465 ARG B 2 REMARK 465 TYR B 3 REMARK 465 PRO B 4 REMARK 465 ASN B 5 REMARK 465 GLY B 6 REMARK 465 LYS B 7 REMARK 465 THR B 8 REMARK 465 PHE B 9 REMARK 465 GLN B 10 REMARK 465 PRO B 11 REMARK 465 LYS B 12 REMARK 465 HIS B 13 REMARK 465 SER B 14 REMARK 465 VAL B 15 REMARK 465 SER B 16 REMARK 465 SER B 17 REMARK 465 GLN B 18 REMARK 465 ASN B 19 REMARK 465 SER B 20 REMARK 465 GLN B 21 REMARK 465 LYS B 22 REMARK 465 ARG B 23 REMARK 465 ALA B 24 REMARK 465 PRO B 25 REMARK 465 SER B 26 REMARK 465 TYR B 27 REMARK 465 SER B 28 REMARK 465 ASN B 29 REMARK 465 ARG B 30 REMARK 465 GLY B 31 REMARK 465 MET B 32 REMARK 465 ILE B 62 REMARK 465 VAL B 63 REMARK 465 ASN B 64 REMARK 465 VAL B 65 REMARK 465 HIS B 66 REMARK 465 TYR B 67 REMARK 465 PRO B 68 REMARK 465 LYS B 69 REMARK 465 ARG B 70 REMARK 465 SER B 71 REMARK 465 ALA B 72 REMARK 465 ALA B 73 REMARK 465 VAL B 74 REMARK 465 ILE B 75 REMARK 465 LYS B 76 REMARK 465 SER B 198 REMARK 465 PRO B 199 REMARK 465 SER B 200 REMARK 465 SER B 201 REMARK 465 GLY B 202 REMARK 465 ALA B 203 REMARK 465 LYS B 204 REMARK 465 GLY B 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 241 O HOH A 248 1.88 REMARK 500 OD1 ASP B 149 O HOH B 219 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 156 CB ASP A 156 CG 0.132 REMARK 500 ASP B 36 CB ASP B 36 CG 0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 36 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 141 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 169 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 185 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 36 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG B 95 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP B 98 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 117 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 141 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP B 156 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 PRO B 184 C - N - CA ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 141 14.30 59.97 REMARK 500 ALA A 183 112.73 -161.54 REMARK 500 LYS B 105 -87.48 -66.36 REMARK 500 ASN B 106 128.26 11.05 REMARK 500 ARG B 157 47.81 -86.57 REMARK 500 LYS B 158 -67.00 -108.19 REMARK 500 LYS B 160 -75.39 -37.88 REMARK 500 ARG B 163 82.34 -66.95 REMARK 500 LYS B 164 36.85 -96.80 REMARK 500 LYS B 168 -56.72 -24.71 REMARK 500 ALA B 183 -115.32 -69.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 162 ARG B 163 -149.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T1461 RELATED DB: TARGETDB DBREF 1RZN A 1 205 UNP P39792 RECU_BACSU 2 206 DBREF 1RZN B 1 205 UNP P39792 RECU_BACSU 2 206 SEQRES 1 A 205 ILE ARG TYR PRO ASN GLY LYS THR PHE GLN PRO LYS HIS SEQRES 2 A 205 SER VAL SER SER GLN ASN SER GLN LYS ARG ALA PRO SER SEQRES 3 A 205 TYR SER ASN ARG GLY MET THR LEU GLU ASP ASP LEU ASN SEQRES 4 A 205 GLU THR ASN LYS TYR TYR LEU THR ASN GLN ILE ALA VAL SEQRES 5 A 205 ILE HIS LYS LYS PRO THR PRO VAL GLN ILE VAL ASN VAL SEQRES 6 A 205 HIS TYR PRO LYS ARG SER ALA ALA VAL ILE LYS GLU ALA SEQRES 7 A 205 TYR PHE LYS GLN SER SER THR THR ASP TYR ASN GLY ILE SEQRES 8 A 205 TYR LYS GLY ARG TYR ILE ASP PHE GLU ALA LYS GLU THR SEQRES 9 A 205 LYS ASN LYS THR SER PHE PRO LEU GLN ASN PHE HIS ASP SEQRES 10 A 205 HIS GLN ILE GLU HIS MET LYS GLN VAL LYS ALA GLN ASP SEQRES 11 A 205 GLY ILE CYS PHE VAL ILE ILE SER ALA PHE ASP GLN VAL SEQRES 12 A 205 TYR PHE LEU GLU ALA ASP LYS LEU PHE TYR PHE TRP ASP SEQRES 13 A 205 ARG LYS GLU LYS ASN GLY ARG LYS SER ILE ARG LYS ASP SEQRES 14 A 205 GLU LEU GLU GLU THR ALA TYR PRO ILE SER LEU GLY TYR SEQRES 15 A 205 ALA PRO ARG ILE ASP TYR ILE SER ILE ILE GLU GLN LEU SEQRES 16 A 205 TYR PHE SER PRO SER SER GLY ALA LYS GLY SEQRES 1 B 205 ILE ARG TYR PRO ASN GLY LYS THR PHE GLN PRO LYS HIS SEQRES 2 B 205 SER VAL SER SER GLN ASN SER GLN LYS ARG ALA PRO SER SEQRES 3 B 205 TYR SER ASN ARG GLY MET THR LEU GLU ASP ASP LEU ASN SEQRES 4 B 205 GLU THR ASN LYS TYR TYR LEU THR ASN GLN ILE ALA VAL SEQRES 5 B 205 ILE HIS LYS LYS PRO THR PRO VAL GLN ILE VAL ASN VAL SEQRES 6 B 205 HIS TYR PRO LYS ARG SER ALA ALA VAL ILE LYS GLU ALA SEQRES 7 B 205 TYR PHE LYS GLN SER SER THR THR ASP TYR ASN GLY ILE SEQRES 8 B 205 TYR LYS GLY ARG TYR ILE ASP PHE GLU ALA LYS GLU THR SEQRES 9 B 205 LYS ASN LYS THR SER PHE PRO LEU GLN ASN PHE HIS ASP SEQRES 10 B 205 HIS GLN ILE GLU HIS MET LYS GLN VAL LYS ALA GLN ASP SEQRES 11 B 205 GLY ILE CYS PHE VAL ILE ILE SER ALA PHE ASP GLN VAL SEQRES 12 B 205 TYR PHE LEU GLU ALA ASP LYS LEU PHE TYR PHE TRP ASP SEQRES 13 B 205 ARG LYS GLU LYS ASN GLY ARG LYS SER ILE ARG LYS ASP SEQRES 14 B 205 GLU LEU GLU GLU THR ALA TYR PRO ILE SER LEU GLY TYR SEQRES 15 B 205 ALA PRO ARG ILE ASP TYR ILE SER ILE ILE GLU GLN LEU SEQRES 16 B 205 TYR PHE SER PRO SER SER GLY ALA LYS GLY FORMUL 3 HOH *80(H2 O) HELIX 1 1 THR A 33 ASN A 48 1 16 HELIX 2 2 GLN A 113 PHE A 115 5 3 HELIX 3 3 HIS A 116 GLN A 129 1 14 HELIX 4 4 ALA A 148 GLY A 162 1 15 HELIX 5 5 LYS A 168 ALA A 175 1 8 HELIX 6 6 ASP A 187 PHE A 197 1 11 HELIX 7 7 THR B 33 ASN B 48 1 16 HELIX 8 8 GLN B 113 PHE B 115 5 3 HELIX 9 9 HIS B 116 GLN B 129 1 14 HELIX 10 10 ALA B 148 LYS B 160 1 13 HELIX 11 11 LYS B 168 ALA B 175 1 8 HELIX 12 12 ASP B 187 PHE B 197 1 11 SHEET 1 A 6 VAL A 52 LYS A 55 0 SHEET 2 A 6 TYR A 88 TYR A 92 -1 O ILE A 91 N VAL A 52 SHEET 3 A 6 ARG A 95 GLU A 103 -1 O PHE A 99 N TYR A 88 SHEET 4 A 6 ILE A 132 ALA A 139 1 O ILE A 136 N GLU A 100 SHEET 5 A 6 GLN A 142 GLU A 147 -1 O TYR A 144 N ILE A 137 SHEET 6 A 6 TYR A 176 PRO A 177 -1 O TYR A 176 N PHE A 145 SHEET 1 B 2 VAL A 60 GLN A 61 0 SHEET 2 B 2 TYR A 79 PHE A 80 -1 O TYR A 79 N GLN A 61 SHEET 1 C 2 SER A 109 PRO A 111 0 SHEET 2 C 2 SER A 165 ARG A 167 -1 O ILE A 166 N PHE A 110 SHEET 1 D 6 VAL B 52 LYS B 55 0 SHEET 2 D 6 TYR B 88 TYR B 92 -1 O ILE B 91 N VAL B 52 SHEET 3 D 6 ARG B 95 GLU B 103 -1 O ILE B 97 N GLY B 90 SHEET 4 D 6 ILE B 132 ALA B 139 1 O SER B 138 N LYS B 102 SHEET 5 D 6 GLN B 142 GLU B 147 -1 O TYR B 144 N ILE B 137 SHEET 6 D 6 TYR B 176 PRO B 177 -1 O TYR B 176 N PHE B 145 SHEET 1 E 2 SER B 109 PRO B 111 0 SHEET 2 E 2 SER B 165 ARG B 167 -1 O ILE B 166 N PHE B 110 CISPEP 1 ALA A 183 PRO A 184 0 2.39 CRYST1 74.303 74.303 155.810 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013458 0.007770 0.000000 0.00000 SCALE2 0.000000 0.015540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006418 0.00000