HEADER OXIDOREDUCTASE 26-DEC-03 1RZP TITLE CRYSTAL STRUCTURE OF C-TERMINAL DESPENTAPEPTIDE NITRITE REDUCTASE FROM TITLE 2 ACHROMOBACTER CYCLOCLASTES AT PH6.2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-CONTAINING NITRITE REDUCTASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: C-TERMINAL DESPENTAPEPTIDE NITRITE REDUCTASE; COMPND 5 SYNONYM: CU-NIR; COMPND 6 EC: 1.7.2.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACHROMOBACTER CYCLOCLASTES; SOURCE 3 ORGANISM_TAXID: 223; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: M15(PREP4) KEYWDS DENITRIFICATION, RESIDUE DELETION, PH PROFILE, GREEK KEY BETA BARREL, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.T.LI,C.WANG,T.CHANG,W.C.CHANG,M.Y.LIU,J.LE GALL,L.L.GUI,J.P.ZHANG, AUTHOR 2 X.M.AN,W.R.CHANG REVDAT 4 25-OCT-23 1RZP 1 REMARK LINK REVDAT 3 24-FEB-09 1RZP 1 VERSN REVDAT 2 06-APR-04 1RZP 1 AUTHOR REVDAT 1 30-MAR-04 1RZP 0 JRNL AUTH H.T.LI,C.WANG,T.CHANG,W.C.CHANG,M.Y.LIU,J.LE GALL,L.L.GUI, JRNL AUTH 2 J.P.ZHANG,X.M.AN,W.R.CHANG JRNL TITL PH-PROFILE CRYSTAL STRUCTURE STUDIES OF C-TERMINAL JRNL TITL 2 DESPENTAPEPTIDE NITRITE REDUCTASE FROM ACHROMOBACTER JRNL TITL 3 CYCLOCLASTES JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 316 107 2004 JRNL REFN ISSN 0006-291X JRNL PMID 15003518 JRNL DOI 10.1016/J.BBRC.2004.01.177 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 107773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2680 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9435 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.14 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 239 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7644 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 835 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.23800 REMARK 3 B22 (A**2) : 3.58500 REMARK 3 B33 (A**2) : -1.34800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112590 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1NIA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 0.1M MES, 0.2M REMARK 280 SODIUM CHLORIDE, PH 6.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.44000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.51500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.51500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.44000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 PRO A 6 REMARK 465 VAL A 7 REMARK 465 ALA B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 PRO B 6 REMARK 465 VAL B 7 REMARK 465 ALA C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 268 N - CA - C ANGL. DEV. = 15.7 DEGREES REMARK 500 ASN A 307 N - CA - C ANGL. DEV. = -18.8 DEGREES REMARK 500 ASN B 307 N - CA - C ANGL. DEV. = -20.3 DEGREES REMARK 500 GLY C 268 N - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 ASN C 307 N - CA - C ANGL. DEV. = -20.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 96 -169.54 -163.82 REMARK 500 ALA A 137 65.00 -154.88 REMARK 500 LEU A 227 42.11 -109.55 REMARK 500 ASN B 96 -169.82 -164.26 REMARK 500 ALA B 137 68.11 -153.27 REMARK 500 GLU B 165 3.45 -64.90 REMARK 500 LEU B 227 47.87 -105.22 REMARK 500 ALA C 137 66.70 -156.44 REMARK 500 LEU C 227 42.73 -108.35 REMARK 500 HIS C 306 20.63 -74.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 ND1 REMARK 620 2 CYS A 136 SG 122.5 REMARK 620 3 HIS A 145 ND1 100.1 106.3 REMARK 620 4 MET A 150 SD 91.1 109.3 128.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 HIS A 135 NE2 110.5 REMARK 620 3 HOH A3003 O 103.1 114.5 REMARK 620 4 HIS B 306 NE2 100.1 110.2 117.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 306 NE2 REMARK 620 2 HIS C 100 NE2 102.8 REMARK 620 3 HIS C 135 NE2 112.0 109.3 REMARK 620 4 HOH C3002 O 115.7 107.8 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 95 ND1 REMARK 620 2 CYS B 136 SG 121.6 REMARK 620 3 HIS B 145 ND1 98.3 109.1 REMARK 620 4 MET B 150 SD 90.7 109.2 127.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 100 NE2 REMARK 620 2 HIS B 135 NE2 109.5 REMARK 620 3 HOH B2003 O 108.8 111.7 REMARK 620 4 HIS C 306 NE2 100.6 110.8 114.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 95 ND1 REMARK 620 2 CYS C 136 SG 122.8 REMARK 620 3 HIS C 145 ND1 97.8 109.7 REMARK 620 4 MET C 150 SD 89.4 108.8 128.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES C 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RZQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT PH 5.0 DBREF 1RZP A 1 335 UNP P25006 NIR_ACHCY 39 373 DBREF 1RZP B 1 335 UNP P25006 NIR_ACHCY 39 373 DBREF 1RZP C 1 335 UNP P25006 NIR_ACHCY 39 373 SEQRES 1 A 335 ALA ALA GLY ALA ALA PRO VAL ASP ILE SER THR LEU PRO SEQRES 2 A 335 ARG VAL LYS VAL ASP LEU VAL LYS PRO PRO PHE VAL HIS SEQRES 3 A 335 ALA HIS ASP GLN VAL ALA LYS THR GLY PRO ARG VAL VAL SEQRES 4 A 335 GLU PHE THR MET THR ILE GLU GLU LYS LYS LEU VAL ILE SEQRES 5 A 335 ASP ARG GLU GLY THR GLU ILE HIS ALA MET THR PHE ASN SEQRES 6 A 335 GLY SER VAL PRO GLY PRO LEU MET VAL VAL HIS GLU ASN SEQRES 7 A 335 ASP TYR VAL GLU LEU ARG LEU ILE ASN PRO ASP THR ASN SEQRES 8 A 335 THR LEU LEU HIS ASN ILE ASP PHE HIS ALA ALA THR GLY SEQRES 9 A 335 ALA LEU GLY GLY GLY ALA LEU THR GLN VAL ASN PRO GLY SEQRES 10 A 335 GLU GLU THR THR LEU ARG PHE LYS ALA THR LYS PRO GLY SEQRES 11 A 335 VAL PHE VAL TYR HIS CYS ALA PRO GLU GLY MET VAL PRO SEQRES 12 A 335 TRP HIS VAL THR SER GLY MET ASN GLY ALA ILE MET VAL SEQRES 13 A 335 LEU PRO ARG ASP GLY LEU LYS ASP GLU LYS GLY GLN PRO SEQRES 14 A 335 LEU THR TYR ASP LYS ILE TYR TYR VAL GLY GLU GLN ASP SEQRES 15 A 335 PHE TYR VAL PRO LYS ASP GLU ALA GLY ASN TYR LYS LYS SEQRES 16 A 335 TYR GLU THR PRO GLY GLU ALA TYR GLU ASP ALA VAL LYS SEQRES 17 A 335 ALA MET ARG THR LEU THR PRO THR HIS ILE VAL PHE ASN SEQRES 18 A 335 GLY ALA VAL GLY ALA LEU THR GLY ASP HIS ALA LEU THR SEQRES 19 A 335 ALA ALA VAL GLY GLU ARG VAL LEU VAL VAL HIS SER GLN SEQRES 20 A 335 ALA ASN ARG ASP THR ARG PRO HIS LEU ILE GLY GLY HIS SEQRES 21 A 335 GLY ASP TYR VAL TRP ALA THR GLY LYS PHE ARG ASN PRO SEQRES 22 A 335 PRO ASP LEU ASP GLN GLU THR TRP LEU ILE PRO GLY GLY SEQRES 23 A 335 THR ALA GLY ALA ALA PHE TYR THR PHE ARG GLN PRO GLY SEQRES 24 A 335 VAL TYR ALA TYR VAL ASN HIS ASN LEU ILE GLU ALA PHE SEQRES 25 A 335 GLU LEU GLY ALA ALA GLY HIS PHE LYS VAL THR GLY GLU SEQRES 26 A 335 TRP ASN ASP ASP LEU MET THR SER VAL VAL SEQRES 1 B 335 ALA ALA GLY ALA ALA PRO VAL ASP ILE SER THR LEU PRO SEQRES 2 B 335 ARG VAL LYS VAL ASP LEU VAL LYS PRO PRO PHE VAL HIS SEQRES 3 B 335 ALA HIS ASP GLN VAL ALA LYS THR GLY PRO ARG VAL VAL SEQRES 4 B 335 GLU PHE THR MET THR ILE GLU GLU LYS LYS LEU VAL ILE SEQRES 5 B 335 ASP ARG GLU GLY THR GLU ILE HIS ALA MET THR PHE ASN SEQRES 6 B 335 GLY SER VAL PRO GLY PRO LEU MET VAL VAL HIS GLU ASN SEQRES 7 B 335 ASP TYR VAL GLU LEU ARG LEU ILE ASN PRO ASP THR ASN SEQRES 8 B 335 THR LEU LEU HIS ASN ILE ASP PHE HIS ALA ALA THR GLY SEQRES 9 B 335 ALA LEU GLY GLY GLY ALA LEU THR GLN VAL ASN PRO GLY SEQRES 10 B 335 GLU GLU THR THR LEU ARG PHE LYS ALA THR LYS PRO GLY SEQRES 11 B 335 VAL PHE VAL TYR HIS CYS ALA PRO GLU GLY MET VAL PRO SEQRES 12 B 335 TRP HIS VAL THR SER GLY MET ASN GLY ALA ILE MET VAL SEQRES 13 B 335 LEU PRO ARG ASP GLY LEU LYS ASP GLU LYS GLY GLN PRO SEQRES 14 B 335 LEU THR TYR ASP LYS ILE TYR TYR VAL GLY GLU GLN ASP SEQRES 15 B 335 PHE TYR VAL PRO LYS ASP GLU ALA GLY ASN TYR LYS LYS SEQRES 16 B 335 TYR GLU THR PRO GLY GLU ALA TYR GLU ASP ALA VAL LYS SEQRES 17 B 335 ALA MET ARG THR LEU THR PRO THR HIS ILE VAL PHE ASN SEQRES 18 B 335 GLY ALA VAL GLY ALA LEU THR GLY ASP HIS ALA LEU THR SEQRES 19 B 335 ALA ALA VAL GLY GLU ARG VAL LEU VAL VAL HIS SER GLN SEQRES 20 B 335 ALA ASN ARG ASP THR ARG PRO HIS LEU ILE GLY GLY HIS SEQRES 21 B 335 GLY ASP TYR VAL TRP ALA THR GLY LYS PHE ARG ASN PRO SEQRES 22 B 335 PRO ASP LEU ASP GLN GLU THR TRP LEU ILE PRO GLY GLY SEQRES 23 B 335 THR ALA GLY ALA ALA PHE TYR THR PHE ARG GLN PRO GLY SEQRES 24 B 335 VAL TYR ALA TYR VAL ASN HIS ASN LEU ILE GLU ALA PHE SEQRES 25 B 335 GLU LEU GLY ALA ALA GLY HIS PHE LYS VAL THR GLY GLU SEQRES 26 B 335 TRP ASN ASP ASP LEU MET THR SER VAL VAL SEQRES 1 C 335 ALA ALA GLY ALA ALA PRO VAL ASP ILE SER THR LEU PRO SEQRES 2 C 335 ARG VAL LYS VAL ASP LEU VAL LYS PRO PRO PHE VAL HIS SEQRES 3 C 335 ALA HIS ASP GLN VAL ALA LYS THR GLY PRO ARG VAL VAL SEQRES 4 C 335 GLU PHE THR MET THR ILE GLU GLU LYS LYS LEU VAL ILE SEQRES 5 C 335 ASP ARG GLU GLY THR GLU ILE HIS ALA MET THR PHE ASN SEQRES 6 C 335 GLY SER VAL PRO GLY PRO LEU MET VAL VAL HIS GLU ASN SEQRES 7 C 335 ASP TYR VAL GLU LEU ARG LEU ILE ASN PRO ASP THR ASN SEQRES 8 C 335 THR LEU LEU HIS ASN ILE ASP PHE HIS ALA ALA THR GLY SEQRES 9 C 335 ALA LEU GLY GLY GLY ALA LEU THR GLN VAL ASN PRO GLY SEQRES 10 C 335 GLU GLU THR THR LEU ARG PHE LYS ALA THR LYS PRO GLY SEQRES 11 C 335 VAL PHE VAL TYR HIS CYS ALA PRO GLU GLY MET VAL PRO SEQRES 12 C 335 TRP HIS VAL THR SER GLY MET ASN GLY ALA ILE MET VAL SEQRES 13 C 335 LEU PRO ARG ASP GLY LEU LYS ASP GLU LYS GLY GLN PRO SEQRES 14 C 335 LEU THR TYR ASP LYS ILE TYR TYR VAL GLY GLU GLN ASP SEQRES 15 C 335 PHE TYR VAL PRO LYS ASP GLU ALA GLY ASN TYR LYS LYS SEQRES 16 C 335 TYR GLU THR PRO GLY GLU ALA TYR GLU ASP ALA VAL LYS SEQRES 17 C 335 ALA MET ARG THR LEU THR PRO THR HIS ILE VAL PHE ASN SEQRES 18 C 335 GLY ALA VAL GLY ALA LEU THR GLY ASP HIS ALA LEU THR SEQRES 19 C 335 ALA ALA VAL GLY GLU ARG VAL LEU VAL VAL HIS SER GLN SEQRES 20 C 335 ALA ASN ARG ASP THR ARG PRO HIS LEU ILE GLY GLY HIS SEQRES 21 C 335 GLY ASP TYR VAL TRP ALA THR GLY LYS PHE ARG ASN PRO SEQRES 22 C 335 PRO ASP LEU ASP GLN GLU THR TRP LEU ILE PRO GLY GLY SEQRES 23 C 335 THR ALA GLY ALA ALA PHE TYR THR PHE ARG GLN PRO GLY SEQRES 24 C 335 VAL TYR ALA TYR VAL ASN HIS ASN LEU ILE GLU ALA PHE SEQRES 25 C 335 GLU LEU GLY ALA ALA GLY HIS PHE LYS VAL THR GLY GLU SEQRES 26 C 335 TRP ASN ASP ASP LEU MET THR SER VAL VAL HET CU A 501 1 HET CU A 502 1 HET SO4 A3002 5 HET CU B 501 1 HET CU B 502 1 HET MES B2002 12 HET CU C 501 1 HET CU C 502 1 HET SO4 C3001 5 HET MES C2001 12 HETNAM CU COPPER (II) ION HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 4 CU 6(CU 2+) FORMUL 6 SO4 2(O4 S 2-) FORMUL 9 MES 2(C6 H13 N O4 S) FORMUL 14 HOH *835(H2 O) HELIX 1 1 ASP A 8 LEU A 12 5 5 HELIX 2 2 GLY A 104 GLY A 109 5 6 HELIX 3 3 MET A 141 THR A 147 1 7 HELIX 4 4 THR A 198 ARG A 211 1 14 HELIX 5 5 THR A 228 ALA A 232 5 5 HELIX 6 6 ASN A 307 GLU A 313 1 7 HELIX 7 7 ASP B 8 LEU B 12 5 5 HELIX 8 8 GLY B 104 GLY B 109 5 6 HELIX 9 9 MET B 141 THR B 147 1 7 HELIX 10 10 THR B 198 ARG B 211 1 14 HELIX 11 11 THR B 228 ALA B 232 5 5 HELIX 12 12 ASN B 307 GLU B 313 1 7 HELIX 13 13 ASP C 8 LEU C 12 5 5 HELIX 14 14 GLY C 104 THR C 112 5 9 HELIX 15 15 MET C 141 THR C 147 1 7 HELIX 16 16 PRO C 199 GLU C 201 5 3 HELIX 17 17 ALA C 202 ARG C 211 1 10 HELIX 18 18 THR C 228 ALA C 232 5 5 HELIX 19 19 ASN C 307 GLU C 313 1 7 SHEET 1 A 3 ARG A 14 LYS A 16 0 SHEET 2 A 3 VAL A 38 VAL A 51 1 O GLU A 40 N VAL A 15 SHEET 3 A 3 GLU A 58 PHE A 64 -1 O ALA A 61 N LYS A 48 SHEET 1 B 5 ARG A 14 LYS A 16 0 SHEET 2 B 5 VAL A 38 VAL A 51 1 O GLU A 40 N VAL A 15 SHEET 3 B 5 TYR A 80 ASN A 87 1 O GLU A 82 N PHE A 41 SHEET 4 B 5 GLU A 118 LYS A 125 -1 O THR A 120 N LEU A 85 SHEET 5 B 5 MET B 331 SER B 333 -1 O THR B 332 N ARG A 123 SHEET 1 C 4 LEU A 72 HIS A 76 0 SHEET 2 C 4 ASN A 151 LEU A 157 1 O MET A 155 N MET A 73 SHEET 3 C 4 GLY A 130 HIS A 135 -1 N GLY A 130 O VAL A 156 SHEET 4 C 4 ASP A 98 PHE A 99 -1 N ASP A 98 O HIS A 135 SHEET 1 D 2 LEU A 162 LYS A 163 0 SHEET 2 D 2 PRO A 169 LEU A 170 -1 O LEU A 170 N LEU A 162 SHEET 1 E 6 HIS A 217 PHE A 220 0 SHEET 2 E 6 LYS A 174 PHE A 183 -1 N GLN A 181 O VAL A 219 SHEET 3 E 6 ARG A 240 GLN A 247 1 O VAL A 244 N VAL A 178 SHEET 4 E 6 THR A 287 THR A 294 -1 O GLY A 289 N HIS A 245 SHEET 5 E 6 GLY A 261 TRP A 265 -1 N TYR A 263 O PHE A 292 SHEET 6 E 6 ASP A 275 GLN A 278 -1 O ASP A 275 N VAL A 264 SHEET 1 F 4 LEU A 233 ALA A 236 0 SHEET 2 F 4 ALA A 317 THR A 323 1 O HIS A 319 N LEU A 233 SHEET 3 F 4 GLY A 299 ASN A 305 -1 N GLY A 299 O VAL A 322 SHEET 4 F 4 PRO A 254 ILE A 257 -1 N ILE A 257 O ALA A 302 SHEET 1 G 5 MET A 331 SER A 333 0 SHEET 2 G 5 GLU C 118 LYS C 125 -1 O ARG C 123 N THR A 332 SHEET 3 G 5 TYR C 80 ASN C 87 -1 N VAL C 81 O PHE C 124 SHEET 4 G 5 VAL C 38 VAL C 51 1 N VAL C 39 O TYR C 80 SHEET 5 G 5 ARG C 14 LYS C 16 1 N VAL C 15 O GLU C 40 SHEET 1 H 5 MET A 331 SER A 333 0 SHEET 2 H 5 GLU C 118 LYS C 125 -1 O ARG C 123 N THR A 332 SHEET 3 H 5 TYR C 80 ASN C 87 -1 N VAL C 81 O PHE C 124 SHEET 4 H 5 VAL C 38 VAL C 51 1 N VAL C 39 O TYR C 80 SHEET 5 H 5 GLU C 58 PHE C 64 -1 O ALA C 61 N LYS C 48 SHEET 1 I 3 ARG B 14 LYS B 16 0 SHEET 2 I 3 VAL B 38 VAL B 51 1 O GLU B 40 N VAL B 15 SHEET 3 I 3 GLU B 58 PHE B 64 -1 O ALA B 61 N LYS B 48 SHEET 1 J 5 ARG B 14 LYS B 16 0 SHEET 2 J 5 VAL B 38 VAL B 51 1 O GLU B 40 N VAL B 15 SHEET 3 J 5 TYR B 80 ASN B 87 1 O GLU B 82 N PHE B 41 SHEET 4 J 5 GLU B 118 LYS B 125 -1 O THR B 120 N LEU B 85 SHEET 5 J 5 MET C 331 SER C 333 -1 O THR C 332 N ARG B 123 SHEET 1 K 4 LEU B 72 HIS B 76 0 SHEET 2 K 4 ASN B 151 LEU B 157 1 O MET B 155 N MET B 73 SHEET 3 K 4 GLY B 130 HIS B 135 -1 N GLY B 130 O VAL B 156 SHEET 4 K 4 ASP B 98 PHE B 99 -1 N ASP B 98 O HIS B 135 SHEET 1 L 2 LEU B 162 LYS B 163 0 SHEET 2 L 2 PRO B 169 LEU B 170 -1 O LEU B 170 N LEU B 162 SHEET 1 M 6 HIS B 217 PHE B 220 0 SHEET 2 M 6 LYS B 174 PHE B 183 -1 N GLN B 181 O VAL B 219 SHEET 3 M 6 ARG B 240 GLN B 247 1 O VAL B 244 N VAL B 178 SHEET 4 M 6 THR B 287 THR B 294 -1 O TYR B 293 N VAL B 241 SHEET 5 M 6 GLY B 261 TRP B 265 -1 N TYR B 263 O PHE B 292 SHEET 6 M 6 ASP B 275 GLN B 278 -1 O ASP B 275 N VAL B 264 SHEET 1 N 4 LEU B 233 ALA B 236 0 SHEET 2 N 4 ALA B 317 THR B 323 1 O HIS B 319 N LEU B 233 SHEET 3 N 4 GLY B 299 ASN B 305 -1 N GLY B 299 O VAL B 322 SHEET 4 N 4 PRO B 254 ILE B 257 -1 N ILE B 257 O ALA B 302 SHEET 1 O 4 LEU C 72 HIS C 76 0 SHEET 2 O 4 ASN C 151 LEU C 157 1 O MET C 155 N MET C 73 SHEET 3 O 4 GLY C 130 HIS C 135 -1 N GLY C 130 O VAL C 156 SHEET 4 O 4 ASP C 98 PHE C 99 -1 N ASP C 98 O HIS C 135 SHEET 1 P 2 LEU C 162 LYS C 163 0 SHEET 2 P 2 PRO C 169 LEU C 170 -1 O LEU C 170 N LEU C 162 SHEET 1 Q 6 HIS C 217 PHE C 220 0 SHEET 2 Q 6 LYS C 174 PHE C 183 -1 N PHE C 183 O HIS C 217 SHEET 3 Q 6 ARG C 240 GLN C 247 1 O VAL C 244 N VAL C 178 SHEET 4 Q 6 THR C 287 THR C 294 -1 O TYR C 293 N VAL C 241 SHEET 5 Q 6 GLY C 261 TRP C 265 -1 N TYR C 263 O PHE C 292 SHEET 6 Q 6 ASP C 275 GLN C 278 -1 O ASP C 275 N VAL C 264 SHEET 1 R 4 LEU C 233 ALA C 236 0 SHEET 2 R 4 ALA C 317 THR C 323 1 O HIS C 319 N LEU C 233 SHEET 3 R 4 GLY C 299 ASN C 305 -1 N GLY C 299 O VAL C 322 SHEET 4 R 4 PRO C 254 ILE C 257 -1 N ILE C 257 O ALA C 302 LINK ND1 HIS A 95 CU CU A 501 1555 1555 2.16 LINK NE2 HIS A 100 CU CU A 502 1555 1555 2.02 LINK NE2 HIS A 135 CU CU A 502 1555 1555 2.09 LINK SG CYS A 136 CU CU A 501 1555 1555 2.29 LINK ND1 HIS A 145 CU CU A 501 1555 1555 2.09 LINK SD MET A 150 CU CU A 501 1555 1555 2.42 LINK NE2 HIS A 306 CU CU C 502 1555 1555 2.15 LINK CU CU A 502 O HOH A3003 1555 1555 1.86 LINK CU CU A 502 NE2 HIS B 306 1555 1555 2.16 LINK ND1 HIS B 95 CU CU B 501 1555 1555 2.15 LINK NE2 HIS B 100 CU CU B 502 1555 1555 2.00 LINK NE2 HIS B 135 CU CU B 502 1555 1555 2.10 LINK SG CYS B 136 CU CU B 501 1555 1555 2.26 LINK ND1 HIS B 145 CU CU B 501 1555 1555 2.15 LINK SD MET B 150 CU CU B 501 1555 1555 2.45 LINK CU CU B 502 O HOH B2003 1555 1555 1.93 LINK CU CU B 502 NE2 HIS C 306 1555 1555 2.20 LINK ND1 HIS C 95 CU CU C 501 1555 1555 2.14 LINK NE2 HIS C 100 CU CU C 502 1555 1555 2.01 LINK NE2 HIS C 135 CU CU C 502 1555 1555 2.08 LINK SG CYS C 136 CU CU C 501 1555 1555 2.26 LINK ND1 HIS C 145 CU CU C 501 1555 1555 2.16 LINK SD MET C 150 CU CU C 501 1555 1555 2.47 LINK CU CU C 502 O HOH C3002 1555 1555 1.93 CISPEP 1 PRO A 22 PRO A 23 0 -0.46 CISPEP 2 VAL A 68 PRO A 69 0 -0.36 CISPEP 3 PRO B 22 PRO B 23 0 -0.02 CISPEP 4 VAL B 68 PRO B 69 0 -0.11 CISPEP 5 PRO C 22 PRO C 23 0 -0.06 CISPEP 6 VAL C 68 PRO C 69 0 -0.15 SITE 1 AC1 4 HIS A 95 CYS A 136 HIS A 145 MET A 150 SITE 1 AC2 5 ASP A 98 HIS A 100 HIS A 135 HOH A3003 SITE 2 AC2 5 HIS B 306 SITE 1 AC3 4 HIS B 95 CYS B 136 HIS B 145 MET B 150 SITE 1 AC4 4 HIS B 100 HIS B 135 HOH B2003 HIS C 306 SITE 1 AC5 4 HIS C 95 CYS C 136 HIS C 145 MET C 150 SITE 1 AC6 5 HIS A 306 ASP C 98 HIS C 100 HIS C 135 SITE 2 AC6 5 HOH C3002 SITE 1 AC7 6 PHE C 24 LYS C 174 TYR C 176 THR C 234 SITE 2 AC7 6 HOH C3030 HOH C3168 SITE 1 AC8 7 PHE A 24 LYS A 174 TYR A 176 THR A 234 SITE 2 AC8 7 HOH A3051 HOH A3116 HOH A3205 SITE 1 AC9 10 HIS C 28 GLN C 30 ASP C 173 LYS C 174 SITE 2 AC9 10 ILE C 175 HOH C3052 HOH C3170 HOH C3179 SITE 3 AC9 10 HOH C3192 HOH C3231 SITE 1 BC1 12 HIS B 28 GLN B 30 ASP B 173 LYS B 174 SITE 2 BC1 12 ILE B 175 HOH B2018 HOH B2131 HOH B2135 SITE 3 BC1 12 HOH B2225 HOH B2249 HOH C3183 HOH C3200 CRYST1 98.880 117.690 123.030 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010113 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008128 0.00000