HEADER ELECTRON TRANSPORT 08-JAN-04 1S24 TITLE RUBREDOXIN DOMAIN II FROM PSEUDOMONAS OLEOVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBREDOXIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RUBREDOXIN C-TERMINAL DOMAIN; COMPND 5 SYNONYM: TWO-IRON RUBREDOXIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS OLEOVORANS; SOURCE 3 ORGANISM_TAXID: 301; SOURCE 4 GENE: ALKG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RUBREDOXIN, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.PERRY,W.TAMBYRAJAH,J.G.GROSSMANN,L.Y.LIAN,N.S.SCRUTTON REVDAT 3 02-MAR-22 1S24 1 REMARK LINK REVDAT 2 24-FEB-09 1S24 1 VERSN REVDAT 1 04-MAY-04 1S24 0 JRNL AUTH A.PERRY,W.TAMBYRAJAH,J.G.GROSSMANN,L.Y.LIAN,N.S.SCRUTTON JRNL TITL SOLUTION STRUCTURE OF THE TWO-IRON RUBREDOXIN OF PSEUDOMONAS JRNL TITL 2 OLEOVORANS DETERMINED BY NMR SPECTROSCOPY AND SOLUTION X-RAY JRNL TITL 3 SCATTERING AND INTERACTIONS WITH RUBREDOXIN REDUCTASE. JRNL REF BIOCHEMISTRY V. 43 3167 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15023067 JRNL DOI 10.1021/BI035817U REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.0, CNS 1.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), NILGES (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S24 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021270. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 310; 298; 310 REMARK 210 PH : 6.0; 6.0; 7.6; 7.6 REMARK 210 IONIC STRENGTH : 40MM; 40MM; 40MM; 40MM REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 10MM RUBREDOXIN C-TERMINAL REMARK 210 DOMAIN; 20 MM POTASSIUM REMARK 210 PHOSPHATE BUFFER, 10MM CD(II) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; 2D TOCSY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.0, CNS 1.0 REMARK 210 METHOD USED : ARIA PROTOCOL WAS USED TO DEAL REMARK 210 WITH AMBIGUOUS DISTANCE REMARK 210 RESTRAINTS AND SOME NOE REMARK 210 ASSIGNMENT. SIMULATING ANNEALING REMARK 210 WAS USED. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : THE SUBMITTED CONFORMER MODELS REMARK 210 ARE THE 20 STRUCTURES WITH THE REMARK 210 LOWEST REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 PRO A -30 REMARK 465 THR A -29 REMARK 465 SER A -28 REMARK 465 LEU A -27 REMARK 465 GLU A -26 REMARK 465 LYS A -25 REMARK 465 LEU A -24 REMARK 465 PRO A -23 REMARK 465 SER A -22 REMARK 465 ALA A -21 REMARK 465 ASP A -20 REMARK 465 VAL A -19 REMARK 465 LYS A -18 REMARK 465 GLY A -17 REMARK 465 GLN A -16 REMARK 465 ASP A -15 REMARK 465 LEU A -14 REMARK 465 TYR A -13 REMARK 465 LYS A -12 REMARK 465 THR A -11 REMARK 465 GLN A -10 REMARK 465 PRO A -9 REMARK 465 PRO A -8 REMARK 465 ARG A -7 REMARK 465 SER A -6 REMARK 465 ASP A -5 REMARK 465 ALA A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 LYS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 18 62.30 -176.68 REMARK 500 1 THR A 26 150.89 -49.33 REMARK 500 1 PRO A 27 95.77 -62.45 REMARK 500 1 PRO A 35 -163.42 -62.12 REMARK 500 1 CYS A 43 -75.15 -111.32 REMARK 500 1 THR A 46 -167.45 -78.49 REMARK 500 1 GLU A 54 172.79 54.23 REMARK 500 2 LEU A 18 69.59 -176.96 REMARK 500 2 PHE A 25 83.81 -66.72 REMARK 500 2 THR A 26 152.54 -49.77 REMARK 500 2 PRO A 27 106.99 -58.04 REMARK 500 2 ILE A 34 109.82 -58.68 REMARK 500 2 PRO A 35 -161.51 -62.02 REMARK 500 2 CYS A 39 -160.89 -173.94 REMARK 500 2 CYS A 43 -70.34 -92.40 REMARK 500 2 THR A 46 -162.24 -67.42 REMARK 500 3 LEU A 18 65.05 -176.49 REMARK 500 3 THR A 26 151.29 -49.46 REMARK 500 3 PRO A 35 -155.77 -58.83 REMARK 500 3 CYS A 39 -164.58 -128.96 REMARK 500 3 ASP A 42 40.69 -157.49 REMARK 500 3 CYS A 43 -59.51 -141.88 REMARK 500 3 GLU A 54 72.08 -165.01 REMARK 500 4 CYS A 7 96.93 -67.67 REMARK 500 4 LEU A 18 68.45 -175.55 REMARK 500 4 PRO A 27 106.57 -56.15 REMARK 500 4 PRO A 35 -169.72 -69.52 REMARK 500 4 CYS A 39 -160.53 -162.36 REMARK 500 4 CYS A 43 -46.15 -141.57 REMARK 500 4 THR A 46 -159.85 -109.25 REMARK 500 5 CYS A 7 92.20 -63.93 REMARK 500 5 LEU A 18 64.39 -176.57 REMARK 500 5 PRO A 35 94.91 -46.94 REMARK 500 5 ASP A 36 -46.32 -175.48 REMARK 500 5 ASP A 37 32.60 -171.58 REMARK 500 5 CYS A 39 -161.34 -169.66 REMARK 500 5 ASP A 42 50.76 -148.10 REMARK 500 5 CYS A 43 -45.63 -136.58 REMARK 500 5 GLU A 54 126.70 -172.84 REMARK 500 5 GLU A 55 52.66 -151.56 REMARK 500 6 LEU A 18 68.48 -173.42 REMARK 500 6 PRO A 27 95.51 -54.54 REMARK 500 6 PRO A 35 -164.65 -61.82 REMARK 500 6 CYS A 43 -75.04 -111.86 REMARK 500 6 ALA A 45 -169.17 -113.66 REMARK 500 7 LEU A 18 69.34 -176.61 REMARK 500 7 THR A 26 151.40 -47.86 REMARK 500 7 PRO A 27 104.92 -56.96 REMARK 500 7 PRO A 35 -150.60 -62.91 REMARK 500 7 CYS A 39 -160.89 -162.24 REMARK 500 REMARK 500 THIS ENTRY HAS 148 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 57 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 7 SG REMARK 620 2 CYS A 10 SG 97.4 REMARK 620 3 CYS A 40 SG 90.9 116.5 REMARK 620 4 CYS A 43 SG 143.6 88.0 118.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 57 DBREF 1S24 A -30 56 UNP P00272 RUBR2_PSEOL 86 172 SEQRES 1 A 87 PRO THR SER LEU GLU LYS LEU PRO SER ALA ASP VAL LYS SEQRES 2 A 87 GLY GLN ASP LEU TYR LYS THR GLN PRO PRO ARG SER ASP SEQRES 3 A 87 ALA GLN GLY GLY LYS ALA TYR LEU LYS TRP ILE CYS ILE SEQRES 4 A 87 THR CYS GLY HIS ILE TYR ASP GLU ALA LEU GLY ASP GLU SEQRES 5 A 87 ALA GLU GLY PHE THR PRO GLY THR ARG PHE GLU ASP ILE SEQRES 6 A 87 PRO ASP ASP TRP CYS CYS PRO ASP CYS GLY ALA THR LYS SEQRES 7 A 87 GLU ASP TYR VAL LEU TYR GLU GLU LYS HET CD A 57 1 HETNAM CD CADMIUM ION FORMUL 2 CD CD 2+ HELIX 1 1 ARG A 30 ILE A 34 5 5 HELIX 2 2 THR A 46 GLU A 48 5 3 SHEET 1 A 3 ILE A 13 ASP A 15 0 SHEET 2 A 3 LYS A 4 CYS A 7 -1 N TRP A 5 O TYR A 14 SHEET 3 A 3 TYR A 50 LEU A 52 -1 O VAL A 51 N ILE A 6 LINK SG CYS A 7 CD CD A 57 1555 1555 2.57 LINK SG CYS A 10 CD CD A 57 1555 1555 2.49 LINK SG CYS A 40 CD CD A 57 1555 1555 2.57 LINK SG CYS A 43 CD CD A 57 1555 1555 2.58 SITE 1 AC1 4 CYS A 7 CYS A 10 CYS A 40 CYS A 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1