HEADER TRANSFERASE 13-JAN-04 1S3H TITLE PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT A59T COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCARBOXYLASE 5S SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.3.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROPIONIBACTERIUM FREUDENREICHII SUBSP. SOURCE 3 SHERMANII; SOURCE 4 ORGANISM_TAXID: 1752; SOURCE 5 STRAIN: SUBSP. SHERMANII; SOURCE 6 GENE: 5S; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3)PLACI; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETBLUE-2 KEYWDS TIM-BARREL, CARBAMYLATED LYSINE, TRANSCARBOXYLASE, COBALT, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.R.HALL,R.ZHENG,L.ANTONY,M.PUSZTAI-CAREY,P.R.CAREY,V.C.YEE REVDAT 7 15-NOV-23 1S3H 1 REMARK REVDAT 6 23-AUG-23 1S3H 1 REMARK REVDAT 5 27-OCT-21 1S3H 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1S3H 1 VERSN REVDAT 3 24-FEB-09 1S3H 1 VERSN REVDAT 2 28-SEP-04 1S3H 1 JRNL REVDAT 1 07-SEP-04 1S3H 0 JRNL AUTH P.R.HALL,R.ZHENG,L.ANTONY,M.PUSZTAI-CAREY,P.R.CAREY,V.C.YEE JRNL TITL TRANSCARBOXYLASE 5S STRUCTURES: ASSEMBLY AND CATALYTIC JRNL TITL 2 MECHANISM OF A MULTIENZYME COMPLEX SUBUNIT. JRNL REF EMBO J. V. 23 3621 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15329673 JRNL DOI 10.1038/SJ.EMBOJ.7600373 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.R.HALL,R.ZHENG,M.PUSZTAI-CAREY,F.VAN DEN AKKER,P.R.CAREY, REMARK 1 AUTH 2 V.C.YEE REMARK 1 TITL EXPRESSION AND CRYSTALLIZATION OF SEVERAL FORMS OF THE REMARK 1 TITL 2 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 521 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 14993680 REMARK 1 DOI 10.1107/S0907444903028294 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 226821.140 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 18621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 905 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2733 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3665 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.59000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : -1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.940 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP2.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18621 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.17700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1RQB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, TRIS , PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.35900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.35900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.12900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.16000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.12900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.16000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.35900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.12900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.16000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.35900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.12900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.16000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A MONOMER. THE BIOLOGICAL REMARK 300 DIMER IS FORMED BY THE FOLLOWING TRANSFORMATION: -1.0000*X+ 0.0000* REMARK 300 Y+ 0.0000*Z+ 192.516 0.0000*X+ 1.0000*Y+ 0.0000*Z+ 0.000 0.0000*X+ REMARK 300 0.0000*Y+ -1.0000*Z+ 39.359 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 192.51600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -39.35900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ALA A -9 REMARK 465 ILE A -8 REMARK 465 SER A -7 REMARK 465 ARG A -6 REMARK 465 GLU A -5 REMARK 465 LEU A -4 REMARK 465 VAL A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 ASN A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 GLU A 475 REMARK 465 GLY A 476 REMARK 465 ASP A 477 REMARK 465 GLU A 478 REMARK 465 LYS A 479 REMARK 465 SER A 480 REMARK 465 LEU A 481 REMARK 465 ALA A 482 REMARK 465 VAL A 483 REMARK 465 ALA A 484 REMARK 465 GLY A 485 REMARK 465 PRO A 486 REMARK 465 VAL A 487 REMARK 465 THR A 488 REMARK 465 TYR A 489 REMARK 465 ASN A 490 REMARK 465 VAL A 491 REMARK 465 ASN A 492 REMARK 465 VAL A 493 REMARK 465 GLY A 494 REMARK 465 GLY A 495 REMARK 465 THR A 496 REMARK 465 VAL A 497 REMARK 465 ARG A 498 REMARK 465 GLU A 499 REMARK 465 VAL A 500 REMARK 465 THR A 501 REMARK 465 VAL A 502 REMARK 465 GLN A 503 REMARK 465 GLN A 504 REMARK 465 ALA A 505 REMARK 465 THR A 506 REMARK 465 ARG A 507 REMARK 465 ALA A 508 REMARK 465 SER A 509 REMARK 465 GLN A 510 REMARK 465 PRO A 511 REMARK 465 GLU A 512 REMARK 465 LEU A 513 REMARK 465 ALA A 514 REMARK 465 PRO A 515 REMARK 465 GLU A 516 REMARK 465 ASP A 517 REMARK 465 PRO A 518 REMARK 465 GLU A 519 REMARK 465 ASP A 520 REMARK 465 LEU A 521 REMARK 465 GLU A 522 REMARK 465 HIS A 523 REMARK 465 HIS A 524 REMARK 465 HIS A 525 REMARK 465 HIS A 526 REMARK 465 HIS A 527 REMARK 465 HIS A 528 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 22 -82.48 -136.39 REMARK 500 MET A 29 47.68 -140.77 REMARK 500 CYS A 55 11.57 -141.11 REMARK 500 LEU A 97 -131.68 49.12 REMARK 500 MET A 245 49.88 -140.53 REMARK 500 LEU A 247 -167.69 73.55 REMARK 500 ASN A 269 42.91 -100.52 REMARK 500 ALA A 321 -9.38 -56.70 REMARK 500 ALA A 324 91.43 -43.47 REMARK 500 ASP A 326 -15.94 -40.70 REMARK 500 MET A 364 -97.93 -90.35 REMARK 500 ASP A 391 107.90 -55.50 REMARK 500 GLU A 418 -12.58 -142.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 529 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 23 OD1 REMARK 620 2 KCX A 184 OQ1 153.3 REMARK 620 3 KCX A 184 OQ2 95.5 58.7 REMARK 620 4 HIS A 215 NE2 84.2 98.2 83.4 REMARK 620 5 HIS A 217 NE2 98.1 107.8 166.4 98.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 529 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RQB RELATED DB: PDB REMARK 900 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT REMARK 900 RELATED ID: 1RQE RELATED DB: PDB REMARK 900 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT BOUND TO REMARK 900 OXALOACETATE REMARK 900 RELATED ID: 1RQH RELATED DB: PDB REMARK 900 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT BOUND TO REMARK 900 PYRUVIC ACID REMARK 900 RELATED ID: 1RR2 RELATED DB: PDB REMARK 900 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT BOUND TO 2- REMARK 900 KETOBUTYRATE REMARK 900 RELATED ID: 1S27 RELATED DB: PDB REMARK 900 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT M186I DBREF 1S3H A 2 505 UNP Q70AC7 5S_PROFR 2 505 SEQADV 1S3H MET A -10 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H ALA A -9 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H ILE A -8 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H SER A -7 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H ARG A -6 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H GLU A -5 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H LEU A -4 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H VAL A -3 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H ASP A -2 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H PRO A -1 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H ASN A 0 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H SER A 1 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H THR A 59 UNP Q70AC7 ALA 59 ENGINEERED MUTATION SEQADV 1S3H KCX A 184 UNP Q70AC7 LYS 184 MODIFIED RESIDUE SEQADV 1S3H THR A 506 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H ARG A 507 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H ALA A 508 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H SER A 509 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H GLN A 510 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H PRO A 511 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H GLU A 512 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H LEU A 513 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H ALA A 514 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H PRO A 515 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H GLU A 516 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H ASP A 517 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H PRO A 518 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H GLU A 519 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H ASP A 520 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H LEU A 521 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H GLU A 522 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H HIS A 523 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H HIS A 524 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H HIS A 525 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H HIS A 526 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H HIS A 527 UNP Q70AC7 CLONING ARTIFACT SEQADV 1S3H HIS A 528 UNP Q70AC7 CLONING ARTIFACT SEQRES 1 A 539 MET ALA ILE SER ARG GLU LEU VAL ASP PRO ASN SER SER SEQRES 2 A 539 PRO ARG GLU ILE GLU VAL SER GLU PRO ARG GLU VAL GLY SEQRES 3 A 539 ILE THR GLU LEU VAL LEU ARG ASP ALA HIS GLN SER LEU SEQRES 4 A 539 MET ALA THR ARG MET ALA MET GLU ASP MET VAL GLY ALA SEQRES 5 A 539 CYS ALA ASP ILE ASP ALA ALA GLY TYR TRP SER VAL GLU SEQRES 6 A 539 CYS TRP GLY GLY THR THR TYR ASP SER CYS ILE ARG PHE SEQRES 7 A 539 LEU ASN GLU ASP PRO TRP GLU ARG LEU ARG THR PHE ARG SEQRES 8 A 539 LYS LEU MET PRO ASN SER ARG LEU GLN MET LEU LEU ARG SEQRES 9 A 539 GLY GLN ASN LEU LEU GLY TYR ARG HIS TYR ASN ASP GLU SEQRES 10 A 539 VAL VAL ASP ARG PHE VAL ASP LYS SER ALA GLU ASN GLY SEQRES 11 A 539 MET ASP VAL PHE ARG VAL PHE ASP ALA MET ASN ASP PRO SEQRES 12 A 539 ARG ASN MET ALA HIS ALA MET ALA ALA VAL LYS LYS ALA SEQRES 13 A 539 GLY LYS HIS ALA GLN GLY THR ILE CYS TYR THR ILE SER SEQRES 14 A 539 PRO VAL HIS THR VAL GLU GLY TYR VAL LYS LEU ALA GLY SEQRES 15 A 539 GLN LEU LEU ASP MET GLY ALA ASP SER ILE ALA LEU KCX SEQRES 16 A 539 ASP MET ALA ALA LEU LEU LYS PRO GLN PRO ALA TYR ASP SEQRES 17 A 539 ILE ILE LYS ALA ILE LYS ASP THR TYR GLY GLN LYS THR SEQRES 18 A 539 GLN ILE ASN LEU HIS CYS HIS SER THR THR GLY VAL THR SEQRES 19 A 539 GLU VAL SER LEU MET LYS ALA ILE GLU ALA GLY VAL ASP SEQRES 20 A 539 VAL VAL ASP THR ALA ILE SER SER MET SER LEU GLY PRO SEQRES 21 A 539 GLY HIS ASN PRO THR GLU SER VAL ALA GLU MET LEU GLU SEQRES 22 A 539 GLY THR GLY TYR THR THR ASN LEU ASP TYR ASP ARG LEU SEQRES 23 A 539 HIS LYS ILE ARG ASP HIS PHE LYS ALA ILE ARG PRO LYS SEQRES 24 A 539 TYR LYS LYS PHE GLU SER LYS THR LEU VAL ASP THR SER SEQRES 25 A 539 ILE PHE LYS SER GLN ILE PRO GLY GLY MET LEU SER ASN SEQRES 26 A 539 MET GLU SER GLN LEU ARG ALA GLN GLY ALA GLU ASP LYS SEQRES 27 A 539 MET ASP GLU VAL MET ALA GLU VAL PRO ARG VAL ARG LYS SEQRES 28 A 539 ALA ALA GLY PHE PRO PRO LEU VAL THR PRO SER SER GLN SEQRES 29 A 539 ILE VAL GLY THR GLN ALA VAL PHE ASN VAL MET MET GLY SEQRES 30 A 539 GLU TYR LYS ARG MET THR GLY GLU PHE ALA ASP ILE MET SEQRES 31 A 539 LEU GLY TYR TYR GLY ALA SER PRO ALA ASP ARG ASP PRO SEQRES 32 A 539 LYS VAL VAL LYS LEU ALA GLU GLU GLN SER GLY LYS LYS SEQRES 33 A 539 PRO ILE THR GLN ARG PRO ALA ASP LEU LEU PRO PRO GLU SEQRES 34 A 539 TRP GLU LYS GLN SER LYS GLU ALA ALA THR LEU LYS GLY SEQRES 35 A 539 PHE ASN GLY THR ASP GLU ASP VAL LEU THR TYR ALA LEU SEQRES 36 A 539 PHE PRO GLN VAL ALA PRO VAL PHE PHE GLU HIS ARG ALA SEQRES 37 A 539 GLU GLY PRO HIS SER VAL ALA LEU THR ASP ALA GLN LEU SEQRES 38 A 539 LYS ALA GLU ALA GLU GLY ASP GLU LYS SER LEU ALA VAL SEQRES 39 A 539 ALA GLY PRO VAL THR TYR ASN VAL ASN VAL GLY GLY THR SEQRES 40 A 539 VAL ARG GLU VAL THR VAL GLN GLN ALA THR ARG ALA SER SEQRES 41 A 539 GLN PRO GLU LEU ALA PRO GLU ASP PRO GLU ASP LEU GLU SEQRES 42 A 539 HIS HIS HIS HIS HIS HIS MODRES 1S3H KCX A 184 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 184 12 HET CO A 529 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CO COBALT (II) ION FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 CO CO 2+ FORMUL 3 HOH *(H2 O) HELIX 1 1 ARG A 22 MET A 29 1 8 HELIX 2 2 ALA A 34 GLY A 40 5 7 HELIX 3 3 ALA A 41 GLY A 49 1 9 HELIX 4 4 THR A 59 LEU A 68 1 10 HELIX 5 5 ASP A 71 MET A 83 1 13 HELIX 6 6 ARG A 93 LEU A 97 5 5 HELIX 7 7 ASN A 104 ASN A 118 1 15 HELIX 8 8 ASP A 131 ALA A 145 1 15 HELIX 9 9 THR A 162 MET A 176 1 15 HELIX 10 10 LYS A 191 GLY A 207 1 17 HELIX 11 11 VAL A 222 GLY A 234 1 13 HELIX 12 12 ILE A 242 SER A 246 5 5 HELIX 13 13 PRO A 253 MET A 260 1 8 HELIX 14 14 ASP A 271 ARG A 286 1 16 HELIX 15 15 PRO A 287 GLU A 293 5 7 HELIX 16 16 SER A 301 GLN A 306 1 6 HELIX 17 17 PRO A 308 ALA A 321 1 14 HELIX 18 18 LYS A 327 ALA A 342 1 16 HELIX 19 19 PRO A 350 MET A 364 1 15 HELIX 20 20 THR A 372 GLY A 381 1 10 HELIX 21 21 ASP A 391 GLY A 403 1 13 HELIX 22 22 ARG A 410 LEU A 415 5 6 HELIX 23 23 GLU A 418 THR A 428 1 11 HELIX 24 24 THR A 435 PHE A 445 1 11 HELIX 25 25 GLN A 447 ARG A 456 1 10 HELIX 26 26 ALA A 457 GLY A 459 5 3 HELIX 27 27 THR A 466 ALA A 474 1 9 SHEET 1 A10 TYR A 266 THR A 268 0 SHEET 2 A10 ARG A 12 GLU A 18 1 N VAL A 14 O THR A 267 SHEET 3 A10 VAL A 237 THR A 240 1 O THR A 240 N THR A 17 SHEET 4 A10 ILE A 212 CYS A 216 1 N LEU A 214 O ASP A 239 SHEET 5 A10 SER A 180 ASP A 185 1 N ASP A 185 O HIS A 215 SHEET 6 A10 HIS A 148 CYS A 154 1 N GLY A 151 O ALA A 182 SHEET 7 A10 VAL A 122 VAL A 125 1 N PHE A 123 O GLN A 150 SHEET 8 A10 LEU A 88 LEU A 92 1 N LEU A 92 O ARG A 124 SHEET 9 A10 SER A 52 GLY A 57 1 N VAL A 53 O GLN A 89 SHEET 10 A10 ARG A 12 GLU A 18 1 N GLU A 18 O GLU A 54 LINK C LEU A 183 N KCX A 184 1555 1555 1.33 LINK C KCX A 184 N ASP A 185 1555 1555 1.33 LINK OD1 ASP A 23 CO CO A 529 1555 1555 2.05 LINK OQ1 KCX A 184 CO CO A 529 1555 1555 2.19 LINK OQ2 KCX A 184 CO CO A 529 1555 1555 2.08 LINK NE2 HIS A 215 CO CO A 529 1555 1555 2.15 LINK NE2 HIS A 217 CO CO A 529 1555 1555 2.22 CISPEP 1 THR A 349 PRO A 350 0 -0.04 SITE 1 AC1 4 ASP A 23 KCX A 184 HIS A 215 HIS A 217 CRYST1 96.258 146.320 78.718 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010389 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012704 0.00000