HEADER REPLICATION, RNA BINDING PROTEIN 15-JAN-04 1S49 TITLE CRYSTAL STRUCTURE OF RNA-DEPENDENT RNA POLYMERASE CONSTRUCT 1 TITLE 2 (RESIDUES 71-679) FROM BOVINE VIRAL DIARRHEA VIRUS COMPLEXED WITH GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 71-679; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOVINE VIRAL DIARRHEA VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11099; SOURCE 4 GENE: NS5B; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYMERASE, RNA SYNTHESIS, DE NOVO INITIATION, PRIMER INDEPENDENT KEYWDS 2 INITIATION, GTP BINDING, BOVINE VIRAL DIARRHEA VIRUS, BVDV, KEYWDS 3 REPLICATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.H.CHOI,J.M.GROARKE,D.C.YOUNG,R.J.KUHN,J.L.SMITH,D.C.PEVEAR, AUTHOR 2 M.G.ROSSMANN REVDAT 4 30-OCT-24 1S49 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1S49 1 VERSN REVDAT 2 24-FEB-09 1S49 1 VERSN REVDAT 1 06-APR-04 1S49 0 JRNL AUTH K.H.CHOI,J.M.GROARKE,D.C.YOUNG,R.J.KUHN,J.L.SMITH, JRNL AUTH 2 D.C.PEVEAR,M.G.ROSSMANN JRNL TITL THE STRUCTURE OF THE RNA-DEPENDENT RNA POLYMERASE FROM JRNL TITL 2 BOVINE VIRAL DIARRHEA VIRUS ESTABLISHES THE ROLE OF GTP IN JRNL TITL 3 DE NOVO INITIATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 4425 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15070734 JRNL DOI 10.1073/PNAS.0400660101 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 208895.300 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 24972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2514 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3635 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 426 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.83000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : 2.34000 REMARK 3 B12 (A**2) : 12.60000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.57 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.55 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.060 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 6.270 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 9.720 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.560 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 12.460; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 14.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : GTP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : GTP.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S49 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.928 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25243 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.12000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, ISOPROPANOL, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.39800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.19900 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.39800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.19900 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.39800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 33.19900 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 66.39800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.19900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MONOMER ASYMMETRIC UNIT COMPRISES THE BIOLOGICAL ENTITY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 356.32962 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 71 REMARK 465 TYR A 72 REMARK 465 LEU A 73 REMARK 465 LYS A 74 REMARK 465 LEU A 75 REMARK 465 LYS A 76 REMARK 465 ASP A 77 REMARK 465 PHE A 78 REMARK 465 ILE A 79 REMARK 465 GLU A 80 REMARK 465 GLU A 81 REMARK 465 GLU A 82 REMARK 465 GLU A 83 REMARK 465 LYS A 84 REMARK 465 LYS A 85 REMARK 465 PRO A 86 REMARK 465 ARG A 87 REMARK 465 VAL A 88 REMARK 465 LYS A 89 REMARK 465 ASP A 90 REMARK 465 THR A 91 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C SER A 532 N GLY A 534 2.07 REMARK 500 O ALA A 222 OE1 GLU A 226 2.17 REMARK 500 O ALA A 540 N SER A 576 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 128 OE1 GLU A 128 4675 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 182 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 GLU A 291 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 LYS A 293 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 GLN A 402 N - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 ASP A 531 CA - C - N ANGL. DEV. = -15.5 DEGREES REMARK 500 SER A 533 N - CA - C ANGL. DEV. = -28.8 DEGREES REMARK 500 THR A 539 N - CA - C ANGL. DEV. = -18.7 DEGREES REMARK 500 LEU A 646 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 HIS A 673 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 96 2.29 -58.65 REMARK 500 PRO A 154 69.13 -53.86 REMARK 500 LYS A 172 -56.82 -129.35 REMARK 500 LYS A 219 17.07 -60.02 REMARK 500 ALA A 221 165.86 -32.02 REMARK 500 SER A 236 -73.20 -99.23 REMARK 500 GLU A 237 23.27 -65.61 REMARK 500 ARG A 252 -165.28 -107.08 REMARK 500 ASP A 277 96.10 -43.04 REMARK 500 LEU A 278 57.66 -91.37 REMARK 500 PRO A 290 -176.69 -63.73 REMARK 500 GLU A 291 41.87 -100.34 REMARK 500 LYS A 293 -50.75 -160.67 REMARK 500 GLN A 308 49.24 33.29 REMARK 500 GLN A 309 -89.11 -60.28 REMARK 500 ASN A 324 12.28 -155.69 REMARK 500 GLN A 402 -152.10 -115.71 REMARK 500 SER A 405 -32.95 -37.40 REMARK 500 CYS A 446 86.26 -150.11 REMARK 500 GLU A 483 -1.72 73.12 REMARK 500 ASP A 508 29.60 -76.12 REMARK 500 SER A 532 47.90 -88.47 REMARK 500 SER A 533 30.03 -88.81 REMARK 500 GLU A 535 148.16 -36.21 REMARK 500 THR A 538 -138.54 -90.72 REMARK 500 GLU A 572 33.84 -89.82 REMARK 500 LEU A 613 -6.41 -59.64 REMARK 500 LYS A 625 15.10 -67.48 REMARK 500 GLU A 642 128.44 -38.81 REMARK 500 LEU A 646 4.87 -58.41 REMARK 500 LYS A 665 153.11 -45.99 REMARK 500 GLN A 676 103.89 -57.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 531 -10.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 2030 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S48 RELATED DB: PDB REMARK 900 RELATED ID: 1S4F RELATED DB: PDB DBREF 1S49 A 71 679 UNP P19711 POLG_BVDVN 3340 3948 SEQADV 1S49 MSE A 115 UNP P19711 MET 3384 MODIFIED RESIDUE SEQADV 1S49 MSE A 143 UNP P19711 MET 3412 MODIFIED RESIDUE SEQADV 1S49 MSE A 302 UNP P19711 MET 3571 MODIFIED RESIDUE SEQADV 1S49 MSE A 384 UNP P19711 MET 3653 MODIFIED RESIDUE SEQADV 1S49 MSE A 416 UNP P19711 MET 3685 MODIFIED RESIDUE SEQADV 1S49 MSE A 422 UNP P19711 MET 3691 MODIFIED RESIDUE SEQADV 1S49 MSE A 423 UNP P19711 MET 3692 MODIFIED RESIDUE SEQADV 1S49 MSE A 467 UNP P19711 MET 3736 MODIFIED RESIDUE SEQADV 1S49 MSE A 485 UNP P19711 MET 3754 MODIFIED RESIDUE SEQADV 1S49 MSE A 514 UNP P19711 MET 3783 MODIFIED RESIDUE SEQADV 1S49 MSE A 526 UNP P19711 MET 3795 MODIFIED RESIDUE SEQADV 1S49 MSE A 552 UNP P19711 MET 3821 MODIFIED RESIDUE SEQRES 1 A 609 ALA TYR LEU LYS LEU LYS ASP PHE ILE GLU GLU GLU GLU SEQRES 2 A 609 LYS LYS PRO ARG VAL LYS ASP THR VAL ILE ARG GLU HIS SEQRES 3 A 609 ASN LYS TRP ILE LEU LYS LYS ILE ARG PHE GLN GLY ASN SEQRES 4 A 609 LEU ASN THR LYS LYS MSE LEU ASN PRO GLY LYS LEU SER SEQRES 5 A 609 GLU GLN LEU ASP ARG GLU GLY ARG LYS ARG ASN ILE TYR SEQRES 6 A 609 ASN HIS GLN ILE GLY THR ILE MSE SER SER ALA GLY ILE SEQRES 7 A 609 ARG LEU GLU LYS LEU PRO ILE VAL ARG ALA GLN THR ASP SEQRES 8 A 609 THR LYS THR PHE HIS GLU ALA ILE ARG ASP LYS ILE ASP SEQRES 9 A 609 LYS SER GLU ASN ARG GLN ASN PRO GLU LEU HIS ASN LYS SEQRES 10 A 609 LEU LEU GLU ILE PHE HIS THR ILE ALA GLN PRO THR LEU SEQRES 11 A 609 LYS HIS THR TYR GLY GLU VAL THR TRP GLU GLN LEU GLU SEQRES 12 A 609 ALA GLY VAL ASN ARG LYS GLY ALA ALA GLY PHE LEU GLU SEQRES 13 A 609 LYS LYS ASN ILE GLY GLU VAL LEU ASP SER GLU LYS HIS SEQRES 14 A 609 LEU VAL GLU GLN LEU VAL ARG ASP LEU LYS ALA GLY ARG SEQRES 15 A 609 LYS ILE LYS TYR TYR GLU THR ALA ILE PRO LYS ASN GLU SEQRES 16 A 609 LYS ARG ASP VAL SER ASP ASP TRP GLN ALA GLY ASP LEU SEQRES 17 A 609 VAL VAL GLU LYS ARG PRO ARG VAL ILE GLN TYR PRO GLU SEQRES 18 A 609 ALA LYS THR ARG LEU ALA ILE THR LYS VAL MSE TYR ASN SEQRES 19 A 609 TRP VAL LYS GLN GLN PRO VAL VAL ILE PRO GLY TYR GLU SEQRES 20 A 609 GLY LYS THR PRO LEU PHE ASN ILE PHE ASP LYS VAL ARG SEQRES 21 A 609 LYS GLU TRP ASP SER PHE ASN GLU PRO VAL ALA VAL SER SEQRES 22 A 609 PHE ASP THR LYS ALA TRP ASP THR GLN VAL THR SER LYS SEQRES 23 A 609 ASP LEU GLN LEU ILE GLY GLU ILE GLN LYS TYR TYR TYR SEQRES 24 A 609 LYS LYS GLU TRP HIS LYS PHE ILE ASP THR ILE THR ASP SEQRES 25 A 609 HIS MSE THR GLU VAL PRO VAL ILE THR ALA ASP GLY GLU SEQRES 26 A 609 VAL TYR ILE ARG ASN GLY GLN ARG GLY SER GLY GLN PRO SEQRES 27 A 609 ASP THR SER ALA GLY ASN SER MSE LEU ASN VAL LEU THR SEQRES 28 A 609 MSE MSE TYR ALA PHE CYS GLU SER THR GLY VAL PRO TYR SEQRES 29 A 609 LYS SER PHE ASN ARG VAL ALA ARG ILE HIS VAL CYS GLY SEQRES 30 A 609 ASP ASP GLY PHE LEU ILE THR GLU LYS GLY LEU GLY LEU SEQRES 31 A 609 LYS PHE ALA ASN LYS GLY MSE GLN ILE LEU HIS GLU ALA SEQRES 32 A 609 GLY LYS PRO GLN LYS ILE THR GLU GLY GLU LYS MSE LYS SEQRES 33 A 609 VAL ALA TYR ARG PHE GLU ASP ILE GLU PHE CYS SER HIS SEQRES 34 A 609 THR PRO VAL PRO VAL ARG TRP SER ASP ASN THR SER SER SEQRES 35 A 609 HIS MSE ALA GLY ARG ASP THR ALA VAL ILE LEU SER LYS SEQRES 36 A 609 MSE ALA THR ARG LEU ASP SER SER GLY GLU ARG GLY THR SEQRES 37 A 609 THR ALA TYR GLU LYS ALA VAL ALA PHE SER PHE LEU LEU SEQRES 38 A 609 MSE TYR SER TRP ASN PRO LEU VAL ARG ARG ILE CYS LEU SEQRES 39 A 609 LEU VAL LEU SER GLN GLN PRO GLU THR ASP PRO SER LYS SEQRES 40 A 609 HIS ALA THR TYR TYR TYR LYS GLY ASP PRO ILE GLY ALA SEQRES 41 A 609 TYR LYS ASP VAL ILE GLY ARG ASN LEU SER GLU LEU LYS SEQRES 42 A 609 ARG THR GLY PHE GLU LYS LEU ALA ASN LEU ASN LEU SER SEQRES 43 A 609 LEU SER THR LEU GLY VAL TRP THR LYS HIS THR SER LYS SEQRES 44 A 609 ARG ILE ILE GLN ASP CYS VAL ALA ILE GLY LYS GLU GLU SEQRES 45 A 609 GLY ASN TRP LEU VAL LYS PRO ASP ARG LEU ILE SER SER SEQRES 46 A 609 LYS THR GLY HIS LEU TYR ILE PRO ASP LYS GLY PHE THR SEQRES 47 A 609 LEU GLN GLY LYS HIS TYR GLU GLN LEU GLN LEU MODRES 1S49 MSE A 115 MET SELENOMETHIONINE MODRES 1S49 MSE A 143 MET SELENOMETHIONINE MODRES 1S49 MSE A 302 MET SELENOMETHIONINE MODRES 1S49 MSE A 384 MET SELENOMETHIONINE MODRES 1S49 MSE A 416 MET SELENOMETHIONINE MODRES 1S49 MSE A 422 MET SELENOMETHIONINE MODRES 1S49 MSE A 423 MET SELENOMETHIONINE MODRES 1S49 MSE A 467 MET SELENOMETHIONINE MODRES 1S49 MSE A 485 MET SELENOMETHIONINE MODRES 1S49 MSE A 514 MET SELENOMETHIONINE MODRES 1S49 MSE A 526 MET SELENOMETHIONINE MODRES 1S49 MSE A 552 MET SELENOMETHIONINE HET MSE A 115 8 HET MSE A 143 8 HET MSE A 302 8 HET MSE A 384 8 HET MSE A 416 8 HET MSE A 422 8 HET MSE A 423 8 HET MSE A 467 8 HET MSE A 485 8 HET MSE A 514 8 HET MSE A 526 8 HET MSE A 552 8 HET GTP A2030 32 HETNAM MSE SELENOMETHIONINE HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 GTP C10 H16 N5 O14 P3 HELIX 1 1 ARG A 94 LYS A 102 5 9 HELIX 2 2 ASN A 136 ALA A 146 1 11 HELIX 3 3 ARG A 149 LEU A 153 5 5 HELIX 4 4 ASP A 161 LYS A 172 1 12 HELIX 5 5 GLU A 183 THR A 194 1 12 HELIX 6 6 GLN A 197 LYS A 201 5 5 HELIX 7 7 THR A 208 GLU A 213 1 6 HELIX 8 8 GLY A 231 SER A 236 1 6 HELIX 9 9 GLU A 237 ALA A 250 1 14 HELIX 10 10 VAL A 269 ALA A 275 1 7 HELIX 11 11 LYS A 293 MSE A 302 1 10 HELIX 12 12 MSE A 302 LYS A 307 1 6 HELIX 13 13 TYR A 316 THR A 320 5 5 HELIX 14 14 PRO A 321 PHE A 323 5 3 HELIX 15 15 ASN A 324 SER A 335 1 12 HELIX 16 16 ALA A 348 VAL A 353 1 6 HELIX 17 17 THR A 354 TYR A 369 1 16 HELIX 18 18 LYS A 370 GLU A 372 5 3 HELIX 19 19 TRP A 373 MSE A 384 1 12 HELIX 20 20 ASP A 409 GLY A 431 1 23 HELIX 21 21 PRO A 433 LYS A 435 5 3 HELIX 22 22 SER A 436 VAL A 440 1 5 HELIX 23 23 LYS A 456 ALA A 473 1 18 HELIX 24 24 ARG A 490 ILE A 494 5 5 HELIX 25 25 ASP A 518 ARG A 529 1 12 HELIX 26 26 TYR A 541 SER A 554 1 14 HELIX 27 27 ASN A 556 GLN A 569 1 14 HELIX 28 28 ASP A 586 GLY A 596 1 11 HELIX 29 29 ASN A 598 SER A 600 5 3 HELIX 30 30 GLY A 606 ASN A 614 1 9 HELIX 31 31 LEU A 615 LEU A 620 1 6 HELIX 32 32 HIS A 626 LYS A 640 1 15 HELIX 33 33 ASP A 650 GLY A 658 1 9 SHEET 1 A 2 ILE A 104 GLN A 107 0 SHEET 2 A 2 GLY A 119 LEU A 121 -1 O LYS A 120 N PHE A 106 SHEET 1 B 2 ILE A 155 ARG A 157 0 SHEET 2 B 2 LYS A 266 ASP A 268 -1 O ARG A 267 N VAL A 156 SHEET 1 C 4 VAL A 286 TYR A 289 0 SHEET 2 C 4 GLU A 258 PRO A 262 -1 N ILE A 261 O ILE A 287 SHEET 3 C 4 VAL A 387 THR A 391 1 O ILE A 390 N GLU A 258 SHEET 4 C 4 VAL A 396 ARG A 399 -1 O TYR A 397 N VAL A 389 SHEET 1 D 4 ALA A 441 CYS A 446 0 SHEET 2 D 4 ASP A 449 GLU A 455 -1 O ASP A 449 N CYS A 446 SHEET 3 D 4 PRO A 339 SER A 343 -1 N VAL A 342 O LEU A 452 SHEET 4 D 4 VAL A 487 ALA A 488 -1 O ALA A 488 N ALA A 341 SHEET 1 E 3 SER A 511 GLY A 516 0 SHEET 2 E 3 THR A 500 TRP A 506 -1 N VAL A 504 O SER A 512 SHEET 3 E 3 LEU A 602 THR A 605 -1 O ARG A 604 N ARG A 505 SHEET 1 F 2 TYR A 581 GLY A 585 0 SHEET 2 F 2 GLY A 666 GLN A 670 -1 O PHE A 667 N LYS A 584 LINK C LYS A 114 N MSE A 115 1555 1555 1.32 LINK C MSE A 115 N LEU A 116 1555 1555 1.33 LINK C ILE A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N SER A 144 1555 1555 1.32 LINK C VAL A 301 N MSE A 302 1555 1555 1.33 LINK C MSE A 302 N TYR A 303 1555 1555 1.32 LINK C HIS A 383 N MSE A 384 1555 1555 1.33 LINK C MSE A 384 N THR A 385 1555 1555 1.32 LINK C SER A 415 N MSE A 416 1555 1555 1.33 LINK C MSE A 416 N LEU A 417 1555 1555 1.32 LINK C THR A 421 N MSE A 422 1555 1555 1.33 LINK C MSE A 422 N MSE A 423 1555 1555 1.33 LINK C MSE A 423 N TYR A 424 1555 1555 1.33 LINK C GLY A 466 N MSE A 467 1555 1555 1.34 LINK C MSE A 467 N GLN A 468 1555 1555 1.32 LINK C LYS A 484 N MSE A 485 1555 1555 1.34 LINK C MSE A 485 N LYS A 486 1555 1555 1.33 LINK C HIS A 513 N MSE A 514 1555 1555 1.33 LINK C MSE A 514 N ALA A 515 1555 1555 1.33 LINK C LYS A 525 N MSE A 526 1555 1555 1.33 LINK C MSE A 526 N ALA A 527 1555 1555 1.33 LINK C LEU A 551 N MSE A 552 1555 1555 1.34 LINK C MSE A 552 N TYR A 553 1555 1555 1.32 SITE 1 AC1 10 LYS A 266 THR A 320 PRO A 321 LEU A 322 SITE 2 AC1 10 CYS A 497 ARG A 517 LYS A 525 ARG A 529 SITE 3 AC1 10 TYR A 581 LEU A 677 CRYST1 205.727 205.727 99.597 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004861 0.002806 0.000000 0.00000 SCALE2 0.000000 0.005613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010040 0.00000