HEADER TRANSFERASE 16-JAN-04 1S4Q TITLE CRYSTAL STRUCTURE OF GUANYLATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS TITLE 2 (RV1389) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANYLATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GMP KINASE; COMPND 5 EC: 2.7.4.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: GMK, RV1389, MT1434, MTCY21B4.06, MB1424; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS TRANSFERASE, ATP:GMP-PHOSPHOTRANSFERASE, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 TBSGC EXPDTA X-RAY DIFFRACTION AUTHOR S.CHAN,M.R.SAWAYA,L.J.PERRY,D.EISENBERG,TB STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (TBSGC) REVDAT 4 13-JUL-11 1S4Q 1 VERSN REVDAT 3 24-FEB-09 1S4Q 1 VERSN REVDAT 2 01-FEB-05 1S4Q 1 AUTHOR KEYWDS REMARK REVDAT 1 27-JAN-04 1S4Q 0 JRNL AUTH S.CHAN,M.R.SAWAYA,L.J.PERRY,D.EISENBERG JRNL TITL CRYSTAL STRUCTURE OF GUANYLATE KINASE FROM MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 642 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 893 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1389 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.513 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1419 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1367 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1926 ; 1.890 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3144 ; 0.987 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 182 ; 5.925 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 229 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1580 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 287 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 282 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1542 ; 0.256 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 861 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 99 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.111 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.254 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 915 ; 1.201 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1467 ; 2.173 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 504 ; 3.435 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 459 ; 5.923 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1S4Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-04. REMARK 100 THE RCSB ID CODE IS RCSB021364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-D REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12112 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 79.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.910 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 36.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50800 REMARK 200 FOR SHELL : 4.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, GLYCEROL, TRIS, SODIUM REMARK 280 CHLORIDE, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 56.06300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.06300 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 56.06300 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 56.06300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 56.06300 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 56.06300 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 56.06300 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 56.06300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 56.06300 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 56.06300 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 56.06300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 56.06300 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 56.06300 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 56.06300 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 56.06300 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 56.06300 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 56.06300 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 56.06300 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 56.06300 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 56.06300 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 56.06300 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 56.06300 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 56.06300 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 56.06300 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 56.06300 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 56.06300 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 56.06300 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 56.06300 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 56.06300 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 56.06300 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 56.06300 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 56.06300 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 56.06300 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 56.06300 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 56.06300 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 56.06300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 336 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 GLY A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 465 THR A 9 REMARK 465 LYS A 10 REMARK 465 PRO A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 ARG A 14 REMARK 465 GLY A 15 REMARK 465 GLN A 16 REMARK 465 PRO A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 THR A 203 REMARK 465 ALA A 204 REMARK 465 PRO A 205 REMARK 465 GLY A 206 REMARK 465 SER A 207 REMARK 465 PRO A 208 REMARK 465 GLY A 209 REMARK 465 VAL A 210 REMARK 465 PRO A 211 REMARK 465 ARG A 212 REMARK 465 GLY A 213 REMARK 465 LYS A 214 REMARK 465 LEU A 215 REMARK 465 ALA A 216 REMARK 465 ALA A 217 REMARK 465 ALA A 218 REMARK 465 LEU A 219 REMARK 465 GLU A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 67 -55.24 -123.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV1389 RELATED DB: TARGETDB DBREF 1S4Q A 2 208 UNP P0A5I4 KGUA_MYCTU 2 208 SEQADV 1S4Q MET A -1 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q ALA A 0 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q VAL A 1 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q GLY A 209 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q VAL A 210 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q PRO A 211 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q ARG A 212 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q GLY A 213 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q LYS A 214 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q LEU A 215 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q ALA A 216 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q ALA A 217 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q ALA A 218 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q LEU A 219 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q GLU A 220 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q HIS A 221 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q HIS A 222 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q HIS A 223 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q HIS A 224 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q HIS A 225 UNP P0A5I4 CLONING ARTIFACT SEQADV 1S4Q HIS A 226 UNP P0A5I4 CLONING ARTIFACT SEQRES 1 A 228 MET ALA VAL SER VAL GLY GLU GLY PRO ASP THR LYS PRO SEQRES 2 A 228 THR ALA ARG GLY GLN PRO ALA ALA VAL GLY ARG VAL VAL SEQRES 3 A 228 VAL LEU SER GLY PRO SER ALA VAL GLY LYS SER THR VAL SEQRES 4 A 228 VAL ARG CYS LEU ARG GLU ARG ILE PRO ASN LEU HIS PHE SEQRES 5 A 228 SER VAL SER ALA THR THR ARG ALA PRO ARG PRO GLY GLU SEQRES 6 A 228 VAL ASP GLY VAL ASP TYR HIS PHE ILE ASP PRO THR ARG SEQRES 7 A 228 PHE GLN GLN LEU ILE ASP GLN GLY GLU LEU LEU GLU TRP SEQRES 8 A 228 ALA GLU ILE HIS GLY GLY LEU HIS ARG SER GLY THR LEU SEQRES 9 A 228 ALA GLN PRO VAL ARG ALA ALA ALA ALA THR GLY VAL PRO SEQRES 10 A 228 VAL LEU ILE GLU VAL ASP LEU ALA GLY ALA ARG ALA ILE SEQRES 11 A 228 LYS LYS THR MET PRO GLU ALA VAL THR VAL PHE LEU ALA SEQRES 12 A 228 PRO PRO SER TRP GLN ASP LEU GLN ALA ARG LEU ILE GLY SEQRES 13 A 228 ARG GLY THR GLU THR ALA ASP VAL ILE GLN ARG ARG LEU SEQRES 14 A 228 ASP THR ALA ARG ILE GLU LEU ALA ALA GLN GLY ASP PHE SEQRES 15 A 228 ASP LYS VAL VAL VAL ASN ARG ARG LEU GLU SER ALA CYS SEQRES 16 A 228 ALA GLU LEU VAL SER LEU LEU VAL GLY THR ALA PRO GLY SEQRES 17 A 228 SER PRO GLY VAL PRO ARG GLY LYS LEU ALA ALA ALA LEU SEQRES 18 A 228 GLU HIS HIS HIS HIS HIS HIS HET CL A 300 1 HET FMT A 301 3 HET FMT A 302 3 HET FMT A 303 3 HETNAM CL CHLORIDE ION HETNAM FMT FORMIC ACID FORMUL 2 CL CL 1- FORMUL 3 FMT 3(C H2 O2) FORMUL 6 HOH *134(H2 O) HELIX 1 1 GLY A 33 ILE A 45 1 13 HELIX 2 2 ASP A 73 GLN A 83 1 11 HELIX 3 3 ALA A 103 THR A 112 1 10 HELIX 4 4 ASP A 121 MET A 132 1 12 HELIX 5 5 SER A 144 GLY A 154 1 11 HELIX 6 6 THR A 159 ALA A 176 1 18 HELIX 7 7 GLN A 177 PHE A 180 5 4 HELIX 8 8 ARG A 188 VAL A 201 1 14 SHEET 1 A 5 HIS A 49 PHE A 50 0 SHEET 2 A 5 VAL A 116 GLU A 119 1 O LEU A 117 N HIS A 49 SHEET 3 A 5 VAL A 23 SER A 27 1 N LEU A 26 O ILE A 118 SHEET 4 A 5 VAL A 136 ALA A 141 1 O LEU A 140 N SER A 27 SHEET 5 A 5 LYS A 182 VAL A 185 1 O VAL A 184 N PHE A 139 SHEET 1 B 4 HIS A 70 PHE A 71 0 SHEET 2 B 4 ALA A 54 THR A 55 1 N THR A 55 O HIS A 70 SHEET 3 B 4 HIS A 97 LEU A 102 -1 O GLY A 100 N ALA A 54 SHEET 4 B 4 LEU A 86 ILE A 92 -1 N ILE A 92 O HIS A 97 SSBOND 1 CYS A 40 CYS A 193 1555 1555 2.02 SITE 1 AC1 1 ASP A 179 SITE 1 AC2 5 ALA A 31 VAL A 32 GLY A 33 LYS A 34 SITE 2 AC2 5 SER A 35 SITE 1 AC3 8 ARG A 42 LEU A 48 HIS A 49 PHE A 50 SITE 2 AC3 8 GLN A 146 GLN A 149 ALA A 150 HOH A 353 SITE 1 AC4 4 HIS A 93 ASP A 161 ARG A 165 ASP A 168 CRYST1 112.126 112.126 112.126 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008919 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008919 0.00000