HEADER CELL ADHESION 19-JAN-04 1S4W TITLE NMR STRUCTURE OF THE CYTOPLASMIC DOMAIN OF INTEGRIN AIIB IN DPC TITLE 2 MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN ALPHA-IIB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYTOPLASMIC DOMAIN (RESIDUES 1020-1039); COMPND 5 SYNONYM: PLATELET MEMBRANE GLYCOPROTEIN IIB, GPALPHA IIB, GPIIB, CD41 COMPND 6 ANTIGEN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGA2B, ITGAB, GP2B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET31B KEYWDS CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.VINOGRADOVA,J.VAYNBERG,X.KONG,T.A.HAAS,E.F.PLOW,J.QIN REVDAT 4 02-MAR-22 1S4W 1 REMARK REVDAT 3 24-FEB-09 1S4W 1 VERSN REVDAT 2 06-APR-04 1S4W 1 JRNL REVDAT 1 09-MAR-04 1S4W 0 JRNL AUTH O.VINOGRADOVA,J.VAYNBERG,X.KONG,T.A.HAAS,E.F.PLOW,J.QIN JRNL TITL MEMBRANE-MEDIATED STRUCTURAL TRANSITIONS AT THE CYTOPLASMIC JRNL TITL 2 FACE DURING INTEGRIN ACTIVATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 4094 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15024114 JRNL DOI 10.1073/PNAS.0400742101 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR, X-PLOR REMARK 3 AUTHORS : BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S4W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021370. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 300 MM DDPC, 95/5% H2O/D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, PIPP, X-PLOR REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY AND REMARK 210 DYNAMIC SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 99 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLU A 13 H GLU A 14 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 4 -68.94 -26.27 REMARK 500 1 PRO A 11 -156.21 -44.94 REMARK 500 1 LEU A 12 12.97 58.91 REMARK 500 1 GLU A 14 30.22 32.54 REMARK 500 1 ASP A 15 37.60 -160.37 REMARK 500 1 GLU A 17 16.43 87.89 REMARK 500 1 GLU A 18 19.01 80.54 REMARK 500 2 VAL A 2 50.11 -68.77 REMARK 500 2 PHE A 4 -68.34 -25.26 REMARK 500 2 ARG A 9 107.56 -44.41 REMARK 500 2 PRO A 11 -160.44 -45.53 REMARK 500 2 GLU A 14 28.87 32.58 REMARK 500 2 ASP A 15 35.67 -168.79 REMARK 500 2 GLU A 17 13.91 88.59 REMARK 500 2 GLU A 18 17.40 81.21 REMARK 500 3 VAL A 2 45.15 -145.40 REMARK 500 3 PHE A 4 -69.55 -26.81 REMARK 500 3 PRO A 11 -153.55 -56.94 REMARK 500 3 LEU A 12 12.85 58.41 REMARK 500 3 GLU A 14 24.58 34.56 REMARK 500 3 ASP A 15 34.38 -163.73 REMARK 500 3 GLU A 17 14.03 94.98 REMARK 500 3 GLU A 18 16.64 80.47 REMARK 500 4 VAL A 2 47.98 -74.06 REMARK 500 4 PHE A 4 -69.59 -26.99 REMARK 500 4 PRO A 11 -153.18 -46.32 REMARK 500 4 GLU A 14 31.66 31.08 REMARK 500 4 ASP A 15 35.44 -160.86 REMARK 500 4 GLU A 17 15.85 96.56 REMARK 500 4 GLU A 18 16.24 80.64 REMARK 500 5 VAL A 2 49.52 -153.15 REMARK 500 5 PHE A 4 -69.43 -27.05 REMARK 500 5 PRO A 11 176.47 -42.82 REMARK 500 5 LEU A 12 -10.40 67.82 REMARK 500 5 GLU A 14 178.41 -53.00 REMARK 500 5 ASP A 15 25.22 -74.06 REMARK 500 5 GLU A 18 -10.22 -145.01 REMARK 500 6 PHE A 4 -69.04 -26.83 REMARK 500 6 PRO A 11 -155.93 -48.76 REMARK 500 6 LEU A 12 -54.43 76.90 REMARK 500 6 GLU A 14 -34.51 -33.83 REMARK 500 6 ASP A 16 -18.23 -38.71 REMARK 500 6 GLU A 18 -75.91 -39.17 REMARK 500 7 VAL A 2 54.42 -68.52 REMARK 500 7 PHE A 4 -69.17 -29.57 REMARK 500 7 PRO A 11 40.05 -56.51 REMARK 500 7 GLU A 14 26.29 33.25 REMARK 500 7 ASP A 15 37.72 -165.95 REMARK 500 7 GLU A 17 10.46 108.23 REMARK 500 8 VAL A 2 44.50 -78.12 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S4X RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE CYTOPLASMIC DOMAIN OF INTEGRIN B3 IN DPC REMARK 900 MICELLES DBREF 1S4W A 1 20 UNP P08514 ITA2B_HUMAN 1020 1039 SEQRES 1 A 20 LYS VAL GLY PHE PHE LYS ARG ASN ARG PRO PRO LEU GLU SEQRES 2 A 20 GLU ASP ASP GLU GLU GLY GLU HELIX 1 1 VAL A 2 ARG A 7 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1