HEADER TRANSFERASE 19-JAN-04 1S4Y TITLE CRYSTAL STRUCTURE OF THE ACTIVIN/ACTRIIB EXTRACELLULAR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIVIN RECEPTOR TYPE IIB PRECURSOR; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 5 SYNONYM: ACTR-IIB; COMPND 6 EC: 2.7.1.37; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: INHIBIN BETA A CHAIN; COMPND 10 CHAIN: B, D; COMPND 11 SYNONYM: ACTIVIN BETA-A CHAIN, ERYTHROID DIFFERENTIATION PROTEIN, COMPND 12 EDF; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ACVR2B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: INHBA; SOURCE 13 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS STRUCTURAL GENOMICS, JCSG, TRANSFERASE, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, JOINT CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR J.GREENWALD,M.E.VEGA,G.P.ALLENDORPH,W.H.FISCHER,W.VALE,S.CHOE,JOINT AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 13-JUL-11 1S4Y 1 VERSN REVDAT 4 24-FEB-09 1S4Y 1 VERSN REVDAT 3 18-JAN-05 1S4Y 1 AUTHOR KEYWDS REMARK REVDAT 2 17-AUG-04 1S4Y 1 JRNL REVDAT 1 10-AUG-04 1S4Y 0 JRNL AUTH J.GREENWALD,M.E.VEGA,G.P.ALLENDORPH,W.H.FISCHER,W.VALE, JRNL AUTH 2 S.CHOE JRNL TITL A FLEXIBLE ACTIVIN EXPLAINS THE MEMBRANE-DEPENDENT JRNL TITL 2 COOPERATIVE ASSEMBLY OF TGF-BETA FAMILY RECEPTORS. JRNL REF MOL.CELL V. 15 485 2004 JRNL REFN ISSN 1097-2765 JRNL PMID 15304227 JRNL DOI 10.1016/J.MOLCEL.2004.07.011 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 18101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 988 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1262 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3102 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 177 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.403 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.294 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.206 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.367 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3195 ; 0.031 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2606 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4326 ; 2.385 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6090 ; 1.109 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 385 ; 9.264 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 436 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3603 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 675 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 626 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3072 ; 0.254 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1908 ; 0.103 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 135 ; 0.252 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.261 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 133 ; 0.274 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.378 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1946 ; 1.170 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3099 ; 2.086 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1249 ; 3.378 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1227 ; 5.037 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7191 27.3673 -1.8856 REMARK 3 T TENSOR REMARK 3 T11: 0.0392 T22: 0.2876 REMARK 3 T33: 0.0963 T12: 0.0542 REMARK 3 T13: 0.0516 T23: 0.0576 REMARK 3 L TENSOR REMARK 3 L11: 4.5825 L22: 6.7980 REMARK 3 L33: 5.7008 L12: 0.8426 REMARK 3 L13: -0.9667 L23: -1.3069 REMARK 3 S TENSOR REMARK 3 S11: 0.1324 S12: -0.4428 S13: -0.1557 REMARK 3 S21: 0.2414 S22: -0.1950 S23: -0.4941 REMARK 3 S31: 0.1104 S32: 0.7250 S33: 0.0627 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8592 32.0502 17.3911 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.1430 REMARK 3 T33: 0.1216 T12: -0.0369 REMARK 3 T13: 0.0242 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 1.3398 L22: 0.1993 REMARK 3 L33: 10.4859 L12: 0.1686 REMARK 3 L13: -1.6345 L23: 0.0709 REMARK 3 S TENSOR REMARK 3 S11: 0.1986 S12: -0.2073 S13: 0.1110 REMARK 3 S21: 0.2048 S22: -0.0731 S23: 0.0726 REMARK 3 S31: -0.3839 S32: -0.1986 S33: -0.1254 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 98 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3412 61.8163 27.0920 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.0762 REMARK 3 T33: 0.1747 T12: -0.0754 REMARK 3 T13: 0.0355 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 7.6593 L22: 7.8998 REMARK 3 L33: 4.4353 L12: -0.1698 REMARK 3 L13: 1.5670 L23: 0.0946 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: 0.4369 S13: -0.4348 REMARK 3 S21: -0.2361 S22: 0.0790 S23: -0.2023 REMARK 3 S31: -0.0837 S32: -0.0132 S33: -0.1259 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 116 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2145 47.6157 23.9236 REMARK 3 T TENSOR REMARK 3 T11: 0.2827 T22: 0.2871 REMARK 3 T33: 0.2347 T12: -0.0882 REMARK 3 T13: -0.0231 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 10.8068 L22: 7.6229 REMARK 3 L33: 2.7752 L12: 7.5738 REMARK 3 L13: 4.8658 L23: 3.2454 REMARK 3 S TENSOR REMARK 3 S11: 0.0842 S12: -0.0390 S13: 0.2878 REMARK 3 S21: -0.2309 S22: -0.0510 S23: 0.3190 REMARK 3 S31: 0.0779 S32: -0.3463 S33: -0.0331 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1S4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-04. REMARK 100 THE RCSB ID CODE IS RCSB021372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.21300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MAGNESIUM CHLORIDE, BIS REMARK 280 TRIS, PH 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.14500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.31350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.14500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.31350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 GLU A 96 REMARK 465 PRO A 97 REMARK 465 GLY A 98 REMARK 465 GLY B 6 REMARK 465 LYS B 7 REMARK 465 GLY B 70 REMARK 465 HIS B 71 REMARK 465 SER B 72 REMARK 465 GLU C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 GLY D 1 REMARK 465 LEU D 2 REMARK 465 GLU D 3 REMARK 465 GLY D 50 REMARK 465 THR D 51 REMARK 465 SER D 52 REMARK 465 GLY D 53 REMARK 465 SER D 54 REMARK 465 SER D 55 REMARK 465 LEU D 56 REMARK 465 SER D 57 REMARK 465 HIS D 71 REMARK 465 SER D 72 REMARK 465 PRO D 73 REMARK 465 PHE D 74 REMARK 465 ALA D 75 REMARK 465 ASN D 76 REMARK 465 LEU D 77 REMARK 465 LYS D 78 REMARK 465 SER D 79 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 VAL B 8 CG1 CG2 REMARK 470 SER B 52 OG REMARK 470 ARG B 67 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 73 CG CD REMARK 470 ASN B 76 CG OD1 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 THR C 4 OG1 CG2 REMARK 470 GLU C 30 CG CD OE1 OE2 REMARK 470 GLN C 31 CG CD OE1 NE2 REMARK 470 SER C 44 OG REMARK 470 GLN C 76 CG CD OE1 NE2 REMARK 470 LYS D 7 CG CD CE NZ REMARK 470 ASP D 22 CG OD1 OD2 REMARK 470 GLU D 41 CG CD OE1 OE2 REMARK 470 THR D 61 OG1 CG2 REMARK 470 ILE D 63 CG1 CG2 CD1 REMARK 470 ASN D 64 CG OD1 REMARK 470 ARG D 67 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 130 O HOH A 160 1.53 REMARK 500 O HOH A 138 O HOH B 134 1.73 REMARK 500 O LEU A 50 O HOH A 130 1.99 REMARK 500 ND2 ASN C 20 O HOH C 111 2.00 REMARK 500 O HOH A 113 O HOH A 138 2.08 REMARK 500 O SER D 116 O HOH D 128 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA D 49 O HOH A 136 4455 1.61 REMARK 500 NE2 GLN A 66 O ALA B 75 4556 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 31 C GLN A 31 O 0.248 REMARK 500 GLN A 31 C ASP A 32 N 0.155 REMARK 500 TRP A 56 CG TRP A 56 CD1 -0.101 REMARK 500 PHE A 60 CG PHE A 60 CD2 0.110 REMARK 500 PHE A 60 CG PHE A 60 CD1 0.102 REMARK 500 PHE A 60 CE1 PHE A 60 CZ 0.153 REMARK 500 CYS A 62 CB CYS A 62 SG 0.104 REMARK 500 ASP A 64 CA ASP A 64 CB 0.164 REMARK 500 GLY B 1 N GLY B 1 CA 0.093 REMARK 500 ALA D 49 C ALA D 49 O 0.556 REMARK 500 ASP D 96 CG ASP D 96 OD1 0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 59 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 LEU B 2 CA - CB - CG ANGL. DEV. = 18.6 DEGREES REMARK 500 LEU B 2 CB - CG - CD1 ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU B 2 CB - CG - CD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 ASP B 104 CB - CG - OD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP C 58 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP C 59 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 CYS C 87 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 ALA D 49 CA - C - O ANGL. DEV. = -19.9 DEGREES REMARK 500 CYS D 80 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 30.84 -99.13 REMARK 500 GLN A 31 -75.85 -3.52 REMARK 500 SER A 45 67.11 24.21 REMARK 500 ASP A 58 118.40 -37.61 REMARK 500 ASP A 64 37.32 30.27 REMARK 500 LEU B 2 -38.43 -165.19 REMARK 500 ASN B 9 -146.50 -155.69 REMARK 500 CYS B 11 115.92 -25.75 REMARK 500 ASN B 38 175.41 60.24 REMARK 500 MET B 68 26.21 -74.39 REMARK 500 GLU C 30 170.75 -55.15 REMARK 500 ASN C 43 81.93 -159.55 REMARK 500 SER C 45 15.37 -140.96 REMARK 500 VAL C 51 -71.81 -106.10 REMARK 500 ASP C 58 115.19 -22.72 REMARK 500 ASP C 64 33.03 70.83 REMARK 500 ASN C 74 64.07 -155.59 REMARK 500 LYS D 7 -44.43 -134.88 REMARK 500 PHE D 16 110.42 -161.81 REMARK 500 ASN D 38 -164.98 -66.44 REMARK 500 SER D 60 -76.74 -26.21 REMARK 500 ILE D 63 -77.81 -48.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS B 4 ASP B 5 144.18 REMARK 500 ASP C 32 LYS C 33 -149.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 58 -11.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 356547 RELATED DB: TARGETDB DBREF 1S4Y A 1 98 UNP P27040 AVR2B_MOUSE 23 120 DBREF 1S4Y B 1 116 UNP P08476 INHBA_HUMAN 311 426 DBREF 1S4Y C 1 98 UNP P27040 AVR2B_MOUSE 23 120 DBREF 1S4Y D 1 116 UNP P08476 INHBA_HUMAN 311 426 SEQRES 1 A 98 GLU ALA GLU THR ARG GLU CYS ILE TYR TYR ASN ALA ASN SEQRES 2 A 98 TRP GLU LEU GLU ARG THR ASN GLN SER GLY LEU GLU ARG SEQRES 3 A 98 CYS GLU GLY GLU GLN ASP LYS ARG LEU HIS CYS TYR ALA SEQRES 4 A 98 SER TRP ARG ASN SER SER GLY THR ILE GLU LEU VAL LYS SEQRES 5 A 98 LYS GLY CYS TRP LEU ASP ASP PHE ASN CYS TYR ASP ARG SEQRES 6 A 98 GLN GLU CYS VAL ALA THR GLU GLU ASN PRO GLN VAL TYR SEQRES 7 A 98 PHE CYS CYS CYS GLU GLY ASN PHE CYS ASN GLU ARG PHE SEQRES 8 A 98 THR HIS LEU PRO GLU PRO GLY SEQRES 1 B 116 GLY LEU GLU CYS ASP GLY LYS VAL ASN ILE CYS CYS LYS SEQRES 2 B 116 LYS GLN PHE PHE VAL SER PHE LYS ASP ILE GLY TRP ASN SEQRES 3 B 116 ASP TRP ILE ILE ALA PRO SER GLY TYR HIS ALA ASN TYR SEQRES 4 B 116 CYS GLU GLY GLU CYS PRO SER HIS ILE ALA GLY THR SER SEQRES 5 B 116 GLY SER SER LEU SER PHE HIS SER THR VAL ILE ASN HIS SEQRES 6 B 116 TYR ARG MET ARG GLY HIS SER PRO PHE ALA ASN LEU LYS SEQRES 7 B 116 SER CYS CYS VAL PRO THR LYS LEU ARG PRO MET SER MET SEQRES 8 B 116 LEU TYR TYR ASP ASP GLY GLN ASN ILE ILE LYS LYS ASP SEQRES 9 B 116 ILE GLN ASN MET ILE VAL GLU GLU CYS GLY CYS SER SEQRES 1 C 98 GLU ALA GLU THR ARG GLU CYS ILE TYR TYR ASN ALA ASN SEQRES 2 C 98 TRP GLU LEU GLU ARG THR ASN GLN SER GLY LEU GLU ARG SEQRES 3 C 98 CYS GLU GLY GLU GLN ASP LYS ARG LEU HIS CYS TYR ALA SEQRES 4 C 98 SER TRP ARG ASN SER SER GLY THR ILE GLU LEU VAL LYS SEQRES 5 C 98 LYS GLY CYS TRP LEU ASP ASP PHE ASN CYS TYR ASP ARG SEQRES 6 C 98 GLN GLU CYS VAL ALA THR GLU GLU ASN PRO GLN VAL TYR SEQRES 7 C 98 PHE CYS CYS CYS GLU GLY ASN PHE CYS ASN GLU ARG PHE SEQRES 8 C 98 THR HIS LEU PRO GLU PRO GLY SEQRES 1 D 116 GLY LEU GLU CYS ASP GLY LYS VAL ASN ILE CYS CYS LYS SEQRES 2 D 116 LYS GLN PHE PHE VAL SER PHE LYS ASP ILE GLY TRP ASN SEQRES 3 D 116 ASP TRP ILE ILE ALA PRO SER GLY TYR HIS ALA ASN TYR SEQRES 4 D 116 CYS GLU GLY GLU CYS PRO SER HIS ILE ALA GLY THR SER SEQRES 5 D 116 GLY SER SER LEU SER PHE HIS SER THR VAL ILE ASN HIS SEQRES 6 D 116 TYR ARG MET ARG GLY HIS SER PRO PHE ALA ASN LEU LYS SEQRES 7 D 116 SER CYS CYS VAL PRO THR LYS LEU ARG PRO MET SER MET SEQRES 8 D 116 LEU TYR TYR ASP ASP GLY GLN ASN ILE ILE LYS LYS ASP SEQRES 9 D 116 ILE GLN ASN MET ILE VAL GLU GLU CYS GLY CYS SER FORMUL 5 HOH *177(H2 O) HELIX 1 1 ASN A 13 ARG A 18 1 6 HELIX 2 2 ASP A 59 TYR A 63 5 5 HELIX 3 3 GLY B 24 ASP B 27 5 4 HELIX 4 4 SER B 57 MET B 68 1 12 HELIX 5 5 ASN C 13 ARG C 18 1 6 HELIX 6 6 ASP C 59 TYR C 63 5 5 HELIX 7 7 PHE C 86 GLU C 89 5 4 HELIX 8 8 PHE D 20 GLY D 24 1 5 HELIX 9 9 TRP D 25 ASP D 27 5 3 HELIX 10 10 PHE D 58 MET D 68 1 11 SHEET 1 A 5 SER A 22 ARG A 26 0 SHEET 2 A 5 GLU A 6 ASN A 11 -1 N TYR A 9 O GLY A 23 SHEET 3 A 5 THR A 47 LEU A 57 -1 O LYS A 53 N TYR A 10 SHEET 4 A 5 LEU A 35 SER A 44 -1 N SER A 40 O VAL A 51 SHEET 5 A 5 TYR A 78 GLU A 83 -1 O TYR A 78 N TRP A 41 SHEET 1 B 2 CYS B 12 LYS B 14 0 SHEET 2 B 2 TYR B 39 GLU B 41 -1 O TYR B 39 N LYS B 14 SHEET 1 C 2 PHE B 17 SER B 19 0 SHEET 2 C 2 GLY B 34 HIS B 36 -1 O TYR B 35 N VAL B 18 SHEET 1 D 3 ILE B 29 ALA B 31 0 SHEET 2 D 3 CYS B 81 TYR B 94 -1 O LEU B 92 N ALA B 31 SHEET 3 D 3 ILE B 100 CYS B 115 -1 O ILE B 101 N TYR B 93 SHEET 1 E 5 SER C 22 ARG C 26 0 SHEET 2 E 5 GLU C 6 ASN C 11 -1 N CYS C 7 O GLU C 25 SHEET 3 E 5 GLU C 49 LEU C 57 -1 O LYS C 53 N TYR C 10 SHEET 4 E 5 LEU C 35 ARG C 42 -1 N ARG C 42 O GLU C 49 SHEET 5 E 5 TYR C 78 CYS C 82 -1 O TYR C 78 N TRP C 41 SHEET 1 F 2 CYS C 68 ALA C 70 0 SHEET 2 F 2 PHE C 91 HIS C 93 1 O THR C 92 N ALA C 70 SHEET 1 G 2 CYS D 12 LYS D 14 0 SHEET 2 G 2 TYR D 39 GLU D 41 -1 O TYR D 39 N LYS D 14 SHEET 1 H 2 PHE D 17 SER D 19 0 SHEET 2 H 2 GLY D 34 HIS D 36 -1 O TYR D 35 N VAL D 18 SHEET 1 I 3 ILE D 29 ALA D 31 0 SHEET 2 I 3 CYS D 81 TYR D 94 -1 O LEU D 92 N ALA D 31 SHEET 3 I 3 ILE D 100 CYS D 115 -1 O ILE D 101 N TYR D 93 SSBOND 1 CYS A 7 CYS A 37 1555 1555 2.12 SSBOND 2 CYS A 27 CYS A 55 1555 1555 2.08 SSBOND 3 CYS A 62 CYS A 81 1555 1555 2.11 SSBOND 4 CYS A 68 CYS A 80 1555 1555 2.07 SSBOND 5 CYS A 82 CYS A 87 1555 1555 2.07 SSBOND 6 CYS B 4 CYS B 12 1555 1555 2.07 SSBOND 7 CYS B 11 CYS B 81 1555 1555 2.00 SSBOND 8 CYS B 40 CYS B 113 1555 1555 2.04 SSBOND 9 CYS B 44 CYS B 115 1555 1555 2.06 SSBOND 10 CYS B 80 CYS D 80 1555 1555 2.04 SSBOND 11 CYS C 7 CYS C 37 1555 1555 2.07 SSBOND 12 CYS C 27 CYS C 55 1555 1555 2.11 SSBOND 13 CYS C 62 CYS C 81 1555 1555 2.05 SSBOND 14 CYS C 68 CYS C 80 1555 1555 2.19 SSBOND 15 CYS C 82 CYS C 87 1555 1555 2.05 SSBOND 16 CYS D 4 CYS D 12 1555 1555 2.06 SSBOND 17 CYS D 11 CYS D 81 1555 1555 2.07 SSBOND 18 CYS D 40 CYS D 113 1555 1555 2.03 SSBOND 19 CYS D 44 CYS D 115 1555 1555 2.06 CISPEP 1 ALA B 31 PRO B 32 0 -0.90 CISPEP 2 ALA D 31 PRO D 32 0 1.35 CISPEP 3 CYS D 44 PRO D 45 0 -1.31 CRYST1 86.290 120.627 43.550 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011589 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022962 0.00000