HEADER PROTEIN TRANSPORT 22-JAN-04 1S62 TITLE SOLUTION STRUCTURE OF THE ESCHERICHIA COLI TOLA C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 325-421); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: TOLA, CIM, EXCC, LKY, B0739; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI STR. K12 SUBSTR. W3110; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 316407; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: W3110; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTOLAIII3 KEYWDS TOL G3P INTERACTION, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 16 AUTHOR C.DEPREZ,L.BLANCHARD,J.-P.SIMORRE,M.GAVIOLI,F.GUERLESQUIN, AUTHOR 2 C.LAZDUNSKI,R.LLOUBES,D.MARION REVDAT 5 20-NOV-24 1S62 1 REMARK REVDAT 4 02-MAR-22 1S62 1 REMARK SEQADV REVDAT 3 28-APR-09 1S62 1 REMARK REVDAT 2 24-FEB-09 1S62 1 VERSN REVDAT 1 15-FEB-05 1S62 0 JRNL AUTH C.DEPREZ,R.LLOUBES,M.GAVIOLI,D.MARION,F.GUERLESQUIN, JRNL AUTH 2 L.BLANCHARD JRNL TITL SOLUTION STRUCTURE OF THE E.COLI TOLA C-TERMINAL DOMAIN JRNL TITL 2 REVEALS CONFORMATIONAL CHANGES UPON BINDING TO THE PHAGE G3P JRNL TITL 3 N-TERMINAL DOMAIN. JRNL REF J.MOL.BIOL. V. 346 1047 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15701516 JRNL DOI 10.1016/J.JMB.2004.12.028 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR, TALOS REMARK 3 AUTHORS : VARIAN (VNMR), CORNILESCU (TALOS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S62 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021412. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300; 300 REMARK 210 PH : 6.8; 6.8; 6.8 REMARK 210 IONIC STRENGTH : 100MN NACL, 50MM NAPO4; 50MN REMARK 210 NACL, 50MM NAPO4; 500MN NACL, REMARK 210 50MM NAPO4 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.4MM U-15N, 100MN NACL, 50MM REMARK 210 NAPO4, 90% H2O, 10% D2O; 0.5MM U- REMARK 210 15N,13C, 50MN NACL, 50MM NAPO4, REMARK 210 COMPLETE PROTEASE INHIBITOR REMARK 210 (BOEHRINGER), 90% H2O, 10% D2O; REMARK 210 0.7MM U-15N, 500MN NACL, 50MM REMARK 210 NAPO4, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2000, ARIA 1.0, TALOS REMARK 210 METHOD USED : 2 STEP SIMULATED ANNEALING REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 3 REMARK 210 REMARK 210 REMARK: NOE MIXING TIME OF 0.08 S, TRIPLE-RESONANCE PROBE REMARK 210 INCLUDING SHIELDED Z-GRADIENTS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-16 REMARK 465 RES C SSSEQI REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 47 OD2 ASP A 56 1.59 REMARK 500 HZ3 LYS A 40 OD2 ASP A 63 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 3 174.78 67.81 REMARK 500 1 LYS A 7 -68.58 -144.23 REMARK 500 1 ASN A 8 65.78 -153.42 REMARK 500 1 ALA A 11 23.25 -165.67 REMARK 500 1 PHE A 31 -64.73 -122.71 REMARK 500 1 TYR A 32 -154.87 161.44 REMARK 500 1 TYR A 37 -142.63 -86.41 REMARK 500 1 PRO A 83 -75.57 -92.14 REMARK 500 1 ASN A 93 59.94 -164.38 REMARK 500 1 PRO A 100 119.94 -37.27 REMARK 500 2 PHE A 3 49.04 -106.83 REMARK 500 2 THR A 6 77.66 65.93 REMARK 500 2 LYS A 7 36.67 -90.78 REMARK 500 2 ASN A 9 95.20 -163.75 REMARK 500 2 SER A 36 49.12 -87.97 REMARK 500 2 ALA A 38 173.56 72.26 REMARK 500 2 PRO A 82 104.62 -39.17 REMARK 500 2 ASN A 93 67.69 -164.93 REMARK 500 3 ASN A 5 -60.65 70.29 REMARK 500 3 LYS A 7 80.36 62.98 REMARK 500 3 ASN A 8 -70.62 72.63 REMARK 500 3 ALA A 14 -67.50 -105.95 REMARK 500 3 SER A 29 24.48 -76.90 REMARK 500 3 LYS A 30 -33.39 -133.34 REMARK 500 3 TYR A 32 -121.13 62.02 REMARK 500 3 TYR A 37 -93.84 -92.56 REMARK 500 3 PRO A 50 0.81 -63.88 REMARK 500 3 ASN A 93 74.82 -158.11 REMARK 500 3 PRO A 100 97.66 -53.50 REMARK 500 4 PHE A 3 -103.36 -110.14 REMARK 500 4 SER A 36 -46.27 71.36 REMARK 500 4 PRO A 83 -75.50 -79.38 REMARK 500 4 ASN A 93 38.47 -151.87 REMARK 500 4 PRO A 100 107.38 -53.55 REMARK 500 4 HIS A 101 95.67 -68.20 REMARK 500 5 ASN A 8 100.68 74.81 REMARK 500 5 SER A 12 -95.47 54.94 REMARK 500 5 TYR A 32 90.60 -47.49 REMARK 500 5 ASP A 33 17.64 53.24 REMARK 500 5 TYR A 37 -117.78 -81.76 REMARK 500 5 ALA A 38 147.36 -172.68 REMARK 500 5 ASN A 93 34.64 -173.74 REMARK 500 5 PRO A 100 119.64 -31.61 REMARK 500 6 GLU A 2 94.14 62.62 REMARK 500 6 LYS A 7 57.86 -97.93 REMARK 500 6 LYS A 30 33.30 -148.89 REMARK 500 6 TYR A 32 -72.24 71.10 REMARK 500 6 ASP A 33 24.94 -149.84 REMARK 500 6 SER A 36 -73.27 -109.46 REMARK 500 6 TYR A 37 -107.57 37.23 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 TYR A 32 -10.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4771 RELATED DB: BMRB REMARK 900 ASSIGNMENT OF THE 1H, 15N AND 13C RESONANCES OF THE SAME PROTEIN, REMARK 900 USED TO CALCULATE ITS STRUCTURE DBREF 1S62 A 4 100 UNP P19934 TOLA_ECOLI 325 421 SEQADV 1S62 ALA A 1 UNP P19934 CLONING ARTIFACT SEQADV 1S62 GLU A 2 UNP P19934 CLONING ARTIFACT SEQADV 1S62 PHE A 3 UNP P19934 CLONING ARTIFACT SEQADV 1S62 HIS A 101 UNP P19934 EXPRESSION TAG SEQADV 1S62 HIS A 102 UNP P19934 EXPRESSION TAG SEQADV 1S62 HIS A 103 UNP P19934 EXPRESSION TAG SEQADV 1S62 HIS A 104 UNP P19934 EXPRESSION TAG SEQADV 1S62 HIS A 105 UNP P19934 EXPRESSION TAG SEQADV 1S62 HIS A 106 UNP P19934 EXPRESSION TAG SEQRES 1 A 106 ALA GLU PHE GLY ASN THR LYS ASN ASN GLY ALA SER GLY SEQRES 2 A 106 ALA ASP ILE ASN ASN TYR ALA GLY GLN ILE LYS SER ALA SEQRES 3 A 106 ILE GLU SER LYS PHE TYR ASP ALA SER SER TYR ALA GLY SEQRES 4 A 106 LYS THR CYS THR LEU ARG ILE LYS LEU ALA PRO ASP GLY SEQRES 5 A 106 MET LEU LEU ASP ILE LYS PRO GLU GLY GLY ASP PRO ALA SEQRES 6 A 106 LEU CYS GLN ALA ALA LEU ALA ALA ALA LYS LEU ALA LYS SEQRES 7 A 106 ILE PRO LYS PRO PRO SER GLN ALA VAL TYR GLU VAL PHE SEQRES 8 A 106 LYS ASN ALA PRO LEU ASP PHE LYS PRO HIS HIS HIS HIS SEQRES 9 A 106 HIS HIS HELIX 1 1 GLY A 13 SER A 29 1 17 HELIX 2 2 ASP A 63 LEU A 76 1 14 HELIX 3 3 SER A 84 LYS A 92 1 9 SHEET 1 A 2 LEU A 44 LEU A 48 0 SHEET 2 A 2 LEU A 54 PRO A 59 -1 O LYS A 58 N ARG A 45 SSBOND 1 CYS A 42 CYS A 67 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1