HEADER TRANSFERASE, PLANT PROTEIN 23-JAN-04 1S6J TITLE N-TERMINAL REGION OF THE CA2+-SATURATED CALCIUM REGULATORY DOMAIN TITLE 2 (CLD) FROM SOYBEAN CALCIUM-DEPENDENT PROTEIN KINASE-ALPHA (CDPK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-DEPENDENT PROTEIN KINASE SK5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL REGION OF CALMODULIN-LIKE DOMAIN (CLD); COMPND 5 SYNONYM: CDPK; CALCIUM-DEPENDENT PROTEIN KINASE-ALPHA; COMPND 6 EC: 2.7.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: CDPK SK5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-19B; SOURCE 11 OTHER_DETAILS: 13 RESIDUES FROM AN N-TERMINAL HIS-TAG, AND THE N- SOURCE 12 TERMINAL DOMAIN OF THE CA2+-REGULATORY REGION KEYWDS EF-HAND; HELIX-LOOP-HELIX; CALCIUM-BINDING; CALMODULIN SUPERFAMILY, KEYWDS 2 TRANSFERASE, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR A.M.WELJIE,H.J.VOGEL REVDAT 3 02-MAR-22 1S6J 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1S6J 1 VERSN REVDAT 1 21-DEC-04 1S6J 0 JRNL AUTH A.M.WELJIE,S.M.GAGNE,H.J.VOGEL JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE N-TERMINAL JRNL TITL 2 REGION OF THE CALCIUM REGULATORY DOMAIN FROM SOYBEAN JRNL TITL 3 CALCIUM-DEPENDENT PROTEIN KINASE ALPHA JRNL REF BIOCHEMISTRY V. 42 15131 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15568805 JRNL DOI 10.1021/BI048751R REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.M.WELJIE,K.M.ROBERTSON,H.J.VOGEL REMARK 1 TITL CONFORMATIONAL CHANGES IN THE CA2+-REGULATORY REGION FROM REMARK 1 TITL 2 SOYBEAN CALCIUM-DEPENDENT PROTEIN KINASE-ALPHA: FLUORESCENCE REMARK 1 TITL 3 RESONANCE ENERGY TRANSFER STUDIES REMARK 1 REF J.BIOL.CHEM. V. 278 43764 2003 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.M.WELJIE,H.J.VOGEL REMARK 1 TITL UNEXPECTED STRUCTURE OF THE CA2+-REGULATORY REGION FROM REMARK 1 TITL 2 SOYBEAN CALCIUM-DEPENDENT PROTEIN KINASE-ALPHA REMARK 1 REF J.BIOL.CHEM. V. 279 35494 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 15155727 REMARK 1 DOI 10.1074/JBC.M311520200 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.F.HARPER,M.R.SUSSMAN,G.E.SCHALLER,C.PUTNAM-EVANS, REMARK 1 AUTH 2 H.CHARBONNEAU,A.C.HARMON REMARK 1 TITL A CALCIUM-DEPENDENT PROTEIN KINASE WITH A REGULATORY DOMAIN REMARK 1 TITL 2 SIMILAR TO CALMODULIN REMARK 1 REF SCIENCE V. 252 951 1991 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CNS 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 BASED ON 765 UNAMBIGUOUS NOE-DERIVED RESTRAINTS, 118 AMBIGUOUS NOE- REMARK 3 DERIVED REMARK 3 RESTRAINTS, 130 DIHEDRAL ANGLE RESTRAINTS (CSI AND TALOS DERIVED) REMARK 4 REMARK 4 1S6J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021429. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 200 MM NACL, 10 MM CACL2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM U-15N NTH-CLD; 200 MM REMARK 210 NACL; 10 MM CACL2; 95% H2O, 5% REMARK 210 D2O; 0.5 MM U-15N,13C NTH-CLD; REMARK 210 200 MM NACL; 10 MM CACL2; 95% REMARK 210 H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, NMRVIEW 5.04, CNS REMARK 210 1.1, ARIA 1.2, VNMR UNKNOWN REMARK 210 METHOD USED : SIMULATED ANNEALING; MOLECULAR REMARK 210 DYNAMICS; MATRIX RELAXATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM, REMARK 210 STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 11.82 -148.35 REMARK 500 1 ASP A 7 -74.34 -162.43 REMARK 500 1 GLU A 21 -0.43 -176.03 REMARK 500 1 LYS A 26 -65.94 -90.75 REMARK 500 1 ASN A 36 18.80 55.89 REMARK 500 1 ASP A 47 -16.75 -49.62 REMARK 500 1 SER A 54 -95.63 -91.28 REMARK 500 1 GLU A 55 23.67 -147.95 REMARK 500 1 GLU A 58 -9.60 -54.56 REMARK 500 1 LYS A 72 29.05 44.25 REMARK 500 1 ALA A 84 108.67 -55.47 REMARK 500 1 VAL A 86 84.70 56.91 REMARK 500 2 HIS A 5 -60.51 -109.94 REMARK 500 2 ASP A 7 -71.14 -136.02 REMARK 500 2 ASP A 8 -104.16 -93.63 REMARK 500 2 ASP A 9 20.22 -171.80 REMARK 500 2 ARG A 16 -108.93 -72.12 REMARK 500 2 LYS A 26 -29.83 -38.93 REMARK 500 2 ASN A 36 15.94 55.70 REMARK 500 2 ASP A 47 -16.04 -49.82 REMARK 500 2 SER A 54 -92.36 -68.97 REMARK 500 2 LYS A 72 12.85 56.19 REMARK 500 3 ILE A 6 97.76 -55.61 REMARK 500 3 ASP A 7 -75.14 -169.49 REMARK 500 3 ASP A 8 29.89 -166.57 REMARK 500 3 ASP A 9 -68.50 -121.98 REMARK 500 3 GLU A 15 -87.53 -96.15 REMARK 500 3 GLU A 20 -65.18 -90.79 REMARK 500 3 GLU A 21 -15.94 -175.04 REMARK 500 3 ASN A 36 16.21 52.54 REMARK 500 3 SER A 54 -97.92 -88.43 REMARK 500 3 GLU A 55 41.83 -141.00 REMARK 500 3 GLU A 58 -9.64 -53.73 REMARK 500 3 ASP A 69 98.64 -54.38 REMARK 500 3 LYS A 72 33.37 34.49 REMARK 500 3 ALA A 84 -80.73 -68.84 REMARK 500 3 VAL A 86 82.77 54.61 REMARK 500 4 HIS A 5 -69.05 -161.75 REMARK 500 4 ASP A 7 -72.78 -167.31 REMARK 500 4 ASP A 8 31.76 -169.53 REMARK 500 4 ASP A 9 -78.68 -101.55 REMARK 500 4 LEU A 25 -25.70 -38.33 REMARK 500 4 LYS A 26 -16.41 -49.42 REMARK 500 4 ASN A 36 13.20 56.04 REMARK 500 4 GLU A 55 33.12 -84.63 REMARK 500 5 ASP A 7 -101.78 -149.53 REMARK 500 5 ASP A 8 54.03 -143.97 REMARK 500 5 ASP A 9 -87.54 -131.56 REMARK 500 5 ARG A 16 -154.57 -67.46 REMARK 500 5 GLU A 21 -15.63 -49.52 REMARK 500 REMARK 500 THIS ENTRY HAS 163 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 88 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 33 OD1 REMARK 620 2 ASP A 33 OD2 39.9 REMARK 620 3 ASP A 35 OD2 109.8 120.5 REMARK 620 4 SER A 37 OG 105.8 68.8 86.1 REMARK 620 5 THR A 39 O 60.7 54.7 170.1 98.9 REMARK 620 6 GLU A 44 OE1 66.6 105.4 89.6 169.5 84.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 89 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 69 OD1 REMARK 620 2 ASP A 71 OD2 120.4 REMARK 620 3 SER A 73 OG 101.4 71.9 REMARK 620 4 THR A 75 O 68.9 138.8 66.9 REMARK 620 5 ASP A 77 OD2 112.7 123.2 116.5 77.7 REMARK 620 6 GLU A 80 OE2 92.3 78.3 150.2 142.9 81.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 88 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 89 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S6I RELATED DB: PDB REMARK 900 CA2+-REGULATORY REGION (CLD) FROM SOYBEAN CALCIUM-DEPENDENT PROTEIN REMARK 900 KINASE-ALPHA (CDPK) IN THE PRESENCE OF CA2+ AND THE JUNCTION DOMAIN REMARK 900 (JD) DBREF 1S6J A 14 87 UNP P28583 CDPK_SOYBN 329 402 SEQADV 1S6J HIS A 1 UNP P28583 EXPRESSION TAG SEQADV 1S6J SER A 2 UNP P28583 EXPRESSION TAG SEQADV 1S6J SER A 3 UNP P28583 EXPRESSION TAG SEQADV 1S6J GLY A 4 UNP P28583 EXPRESSION TAG SEQADV 1S6J HIS A 5 UNP P28583 EXPRESSION TAG SEQADV 1S6J ILE A 6 UNP P28583 EXPRESSION TAG SEQADV 1S6J ASP A 7 UNP P28583 EXPRESSION TAG SEQADV 1S6J ASP A 8 UNP P28583 EXPRESSION TAG SEQADV 1S6J ASP A 9 UNP P28583 EXPRESSION TAG SEQADV 1S6J ASP A 10 UNP P28583 EXPRESSION TAG SEQADV 1S6J LYS A 11 UNP P28583 EXPRESSION TAG SEQADV 1S6J HIS A 12 UNP P28583 EXPRESSION TAG SEQADV 1S6J MET A 13 UNP P28583 EXPRESSION TAG SEQRES 1 A 87 HIS SER SER GLY HIS ILE ASP ASP ASP ASP LYS HIS MET SEQRES 2 A 87 ALA GLU ARG LEU SER GLU GLU GLU ILE GLY GLY LEU LYS SEQRES 3 A 87 GLU LEU PHE LYS MET ILE ASP THR ASP ASN SER GLY THR SEQRES 4 A 87 ILE THR PHE ASP GLU LEU LYS ASP GLY LEU LYS ARG VAL SEQRES 5 A 87 GLY SER GLU LEU MET GLU SER GLU ILE LYS ASP LEU MET SEQRES 6 A 87 ASP ALA ALA ASP ILE ASP LYS SER GLY THR ILE ASP TYR SEQRES 7 A 87 GLY GLU PHE ILE ALA ALA THR VAL HIS HET CA A 88 1 HET CA A 89 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 1 ASP A 8 MET A 13 1 6 HELIX 2 2 GLU A 27 ASP A 33 1 7 HELIX 3 3 PHE A 42 ARG A 51 1 10 HELIX 4 4 MET A 57 ASP A 69 1 13 HELIX 5 5 ASP A 77 ILE A 82 1 6 SHEET 1 A 2 ILE A 40 THR A 41 0 SHEET 2 A 2 THR A 75 ILE A 76 -1 O ILE A 76 N ILE A 40 LINK OD1 ASP A 33 CA CA A 88 1555 1555 3.29 LINK OD2 ASP A 33 CA CA A 88 1555 1555 3.13 LINK OD2 ASP A 35 CA CA A 88 1555 1555 2.96 LINK OG SER A 37 CA CA A 88 1555 1555 2.64 LINK O THR A 39 CA CA A 88 1555 1555 2.34 LINK OE1 GLU A 44 CA CA A 88 1555 1555 2.93 LINK OD1 ASP A 69 CA CA A 89 1555 1555 2.62 LINK OD2 ASP A 71 CA CA A 89 1555 1555 2.85 LINK OG SER A 73 CA CA A 89 1555 1555 2.41 LINK O THR A 75 CA CA A 89 1555 1555 2.82 LINK OD2 ASP A 77 CA CA A 89 1555 1555 3.40 LINK OE2 GLU A 80 CA CA A 89 1555 1555 2.83 SITE 1 AC1 5 ASP A 33 ASP A 35 SER A 37 THR A 39 SITE 2 AC1 5 GLU A 44 SITE 1 AC2 6 ASP A 69 ASP A 71 SER A 73 THR A 75 SITE 2 AC2 6 ASP A 77 GLU A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1