HEADER OXIDOREDUCTASE/ELECTRON TRANSPORT 27-JAN-04 1S6V TITLE STRUCTURE OF A CYTOCHROME C PEROXIDASE-CYTOCHROME C SITE SPECIFIC TITLE 2 CROSS-LINK COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C PEROXIDASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: CCP; COMPND 5 EC: 1.11.1.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CYTOCHROME C, ISO-1; COMPND 10 CHAIN: B, D; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CCP1, CCP, CPO, YKR066C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7-7, PBTR1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PT7-7, PBTR1 KEYWDS OXIDOREDUCTASE, HEME ENZYME, ELECTRON TRANSFER, OXIDOREDUCTASE- KEYWDS 2 ELECTRON TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.GUO,B.BHASKAR,H.LI,T.P.BARROWS,T.L.POULOS REVDAT 4 27-OCT-21 1S6V 1 SEQADV REVDAT 3 03-MAR-21 1S6V 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN FORMUL LINK ATOM REVDAT 2 24-FEB-09 1S6V 1 VERSN REVDAT 1 27-APR-04 1S6V 0 JRNL AUTH M.GUO,B.BHASKAR,H.LI,T.P.BARROWS,T.L.POULOS JRNL TITL CRYSTAL STRUCTURE AND CHARACTERIZATION OF A CYTOCHROME C JRNL TITL 2 PEROXIDASE-CYTOCHROME C SITE-SPECIFIC CROSS-LINK JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 5940 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15071191 JRNL DOI 10.1073/PNAS.0306708101 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.PELLETIER,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURE OF A COMPLEX BETWEEN ELECTRON TRANSFER REMARK 1 TITL 2 PARTNERS, CYTOCHROME C PEROXIDASE AND CYTOCHROME C REMARK 1 REF SCIENCE V. 258 1748 1992 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 1334573 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1807586.860 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 60538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3054 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4711 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 242 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6438 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 173 REMARK 3 SOLVENT ATOMS : 732 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : 4.03000 REMARK 3 B33 (A**2) : -3.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.290 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 66.77 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : PARAM.HEME REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : TOPH.HEME REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021441. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60567 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.57300 REMARK 200 R SYM FOR SHELL (I) : 0.57300 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, KI, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.96000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 134 O HOH D 181 2.10 REMARK 500 O HOH A 904 O HOH A 924 2.13 REMARK 500 O HOH C 388 O HOH C 488 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 380 O HOH C 486 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 3 C - N - CA ANGL. DEV. = 12.7 DEGREES REMARK 500 PRO A 100 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG A 160 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU C 177 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 3 147.82 -4.16 REMARK 500 HIS A 175 2.78 -67.23 REMARK 500 LYS B 27 -130.97 -142.26 REMARK 500 ASN B 56 49.02 38.32 REMARK 500 ASN B 70 88.31 -161.48 REMARK 500 PHE B 82 118.12 -166.96 REMARK 500 PRO C 3 123.66 -28.77 REMARK 500 ASP C 148 42.02 -94.76 REMARK 500 LYS D 27 -134.87 -131.50 REMARK 500 ASN D 70 84.42 -168.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 296 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 175 NE2 REMARK 620 2 HEC A 296 NA 98.5 REMARK 620 3 HEC A 296 NB 92.9 87.7 REMARK 620 4 HEC A 296 NC 95.6 165.6 88.7 REMARK 620 5 HEC A 296 ND 96.9 91.0 170.2 90.2 REMARK 620 6 HOH A1039 O 164.7 67.9 79.9 97.7 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 104 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEC B 104 NA 92.2 REMARK 620 3 HEC B 104 NB 83.4 89.6 REMARK 620 4 HEC B 104 NC 86.7 178.9 90.1 REMARK 620 5 HEC B 104 ND 86.9 88.4 170.0 91.8 REMARK 620 6 MET B 80 SD 177.6 87.1 98.9 94.0 90.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 296 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 175 NE2 REMARK 620 2 HEC C 296 NA 99.4 REMARK 620 3 HEC C 296 NB 93.1 88.5 REMARK 620 4 HEC C 296 NC 93.6 167.0 90.0 REMARK 620 5 HEC C 296 ND 96.6 90.8 170.3 88.4 REMARK 620 6 HOH C 409 O 168.9 70.8 81.8 96.3 88.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC D 104 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 18 NE2 REMARK 620 2 HEC D 104 NA 92.9 REMARK 620 3 HEC D 104 NB 86.3 91.6 REMARK 620 4 HEC D 104 NC 84.1 177.0 88.5 REMARK 620 5 HEC D 104 ND 91.2 89.9 177.2 89.9 REMARK 620 6 MET D 80 SD 174.4 89.8 98.5 93.2 83.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC C 296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC D 104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PCC RELATED DB: PDB REMARK 900 NON-COVALENT COMPLEX BETWEEN CYTOCHROME C PEROXIDASE AND CYTOCHROME REMARK 900 C REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE MUTATION OF RESIDUE -5 (CHAINS B AND D) FROM THR REMARK 999 TO ALA ORIGINATED FROM CLONING. DBREF 1S6V A 1 294 UNP P00431 CCPR_YEAST 68 361 DBREF 1S6V B -5 103 UNP P00044 CYC1_YEAST 2 108 DBREF 1S6V C 1 294 UNP P00431 CCPR_YEAST 68 361 DBREF 1S6V D -5 103 UNP P00044 CYC1_YEAST 2 108 SEQADV 1S6V ALA A 128 UNP P00431 CYS 195 ENGINEERED MUTATION SEQADV 1S6V CYS A 197 UNP P00431 VAL 264 ENGINEERED MUTATION SEQADV 1S6V ALA C 128 UNP P00431 CYS 195 ENGINEERED MUTATION SEQADV 1S6V CYS C 197 UNP P00431 VAL 264 ENGINEERED MUTATION SEQADV 1S6V ALA B -5 UNP P00044 THR 1 SEE REMARK 999 SEQADV 1S6V CYS B 81 UNP P00044 ALA 86 ENGINEERED MUTATION SEQADV 1S6V THR B 102 UNP P00044 CYS 107 ENGINEERED MUTATION SEQADV 1S6V ALA D -5 UNP P00044 THR 1 SEE REMARK 999 SEQADV 1S6V CYS D 81 UNP P00044 ALA 86 ENGINEERED MUTATION SEQADV 1S6V THR D 102 UNP P00044 CYS 107 ENGINEERED MUTATION SEQRES 1 A 294 THR THR PRO LEU VAL HIS VAL ALA SER VAL GLU LYS GLY SEQRES 2 A 294 ARG SER TYR GLU ASP PHE GLN LYS VAL TYR ASN ALA ILE SEQRES 3 A 294 ALA LEU LYS LEU ARG GLU ASP ASP GLU TYR ASP ASN TYR SEQRES 4 A 294 ILE GLY TYR GLY PRO VAL LEU VAL ARG LEU ALA TRP HIS SEQRES 5 A 294 THR SER GLY THR TRP ASP LYS HIS ASP ASN THR GLY GLY SEQRES 6 A 294 SER TYR GLY GLY THR TYR ARG PHE LYS LYS GLU PHE ASN SEQRES 7 A 294 ASP PRO SER ASN ALA GLY LEU GLN ASN GLY PHE LYS PHE SEQRES 8 A 294 LEU GLU PRO ILE HIS LYS GLU PHE PRO TRP ILE SER SER SEQRES 9 A 294 GLY ASP LEU PHE SER LEU GLY GLY VAL THR ALA VAL GLN SEQRES 10 A 294 GLU MET GLN GLY PRO LYS ILE PRO TRP ARG ALA GLY ARG SEQRES 11 A 294 VAL ASP THR PRO GLU ASP THR THR PRO ASP ASN GLY ARG SEQRES 12 A 294 LEU PRO ASP ALA ASP LYS ASP ALA ASP TYR VAL ARG THR SEQRES 13 A 294 PHE PHE GLN ARG LEU ASN MET ASN ASP ARG GLU VAL VAL SEQRES 14 A 294 ALA LEU MET GLY ALA HIS ALA LEU GLY LYS THR HIS LEU SEQRES 15 A 294 LYS ASN SER GLY TYR GLU GLY PRO TRP GLY ALA ALA ASN SEQRES 16 A 294 ASN CYS PHE THR ASN GLU PHE TYR LEU ASN LEU LEU ASN SEQRES 17 A 294 GLU ASP TRP LYS LEU GLU LYS ASN ASP ALA ASN ASN GLU SEQRES 18 A 294 GLN TRP ASP SER LYS SER GLY TYR MET MET LEU PRO THR SEQRES 19 A 294 ASP TYR SER LEU ILE GLN ASP PRO LYS TYR LEU SER ILE SEQRES 20 A 294 VAL LYS GLU TYR ALA ASN ASP GLN ASP LYS PHE PHE LYS SEQRES 21 A 294 ASP PHE SER LYS ALA PHE GLU LYS LEU LEU GLU ASN GLY SEQRES 22 A 294 ILE THR PHE PRO LYS ASP ALA PRO SER PRO PHE ILE PHE SEQRES 23 A 294 LYS THR LEU GLU GLU GLN GLY LEU SEQRES 1 B 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 B 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 B 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 B 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 B 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 B 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 B 108 TYR ILE PRO GLY THR LYS MET CYS PHE GLY GLY LEU LYS SEQRES 8 B 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 B 108 LYS ALA THR GLU SEQRES 1 C 294 THR THR PRO LEU VAL HIS VAL ALA SER VAL GLU LYS GLY SEQRES 2 C 294 ARG SER TYR GLU ASP PHE GLN LYS VAL TYR ASN ALA ILE SEQRES 3 C 294 ALA LEU LYS LEU ARG GLU ASP ASP GLU TYR ASP ASN TYR SEQRES 4 C 294 ILE GLY TYR GLY PRO VAL LEU VAL ARG LEU ALA TRP HIS SEQRES 5 C 294 THR SER GLY THR TRP ASP LYS HIS ASP ASN THR GLY GLY SEQRES 6 C 294 SER TYR GLY GLY THR TYR ARG PHE LYS LYS GLU PHE ASN SEQRES 7 C 294 ASP PRO SER ASN ALA GLY LEU GLN ASN GLY PHE LYS PHE SEQRES 8 C 294 LEU GLU PRO ILE HIS LYS GLU PHE PRO TRP ILE SER SER SEQRES 9 C 294 GLY ASP LEU PHE SER LEU GLY GLY VAL THR ALA VAL GLN SEQRES 10 C 294 GLU MET GLN GLY PRO LYS ILE PRO TRP ARG ALA GLY ARG SEQRES 11 C 294 VAL ASP THR PRO GLU ASP THR THR PRO ASP ASN GLY ARG SEQRES 12 C 294 LEU PRO ASP ALA ASP LYS ASP ALA ASP TYR VAL ARG THR SEQRES 13 C 294 PHE PHE GLN ARG LEU ASN MET ASN ASP ARG GLU VAL VAL SEQRES 14 C 294 ALA LEU MET GLY ALA HIS ALA LEU GLY LYS THR HIS LEU SEQRES 15 C 294 LYS ASN SER GLY TYR GLU GLY PRO TRP GLY ALA ALA ASN SEQRES 16 C 294 ASN CYS PHE THR ASN GLU PHE TYR LEU ASN LEU LEU ASN SEQRES 17 C 294 GLU ASP TRP LYS LEU GLU LYS ASN ASP ALA ASN ASN GLU SEQRES 18 C 294 GLN TRP ASP SER LYS SER GLY TYR MET MET LEU PRO THR SEQRES 19 C 294 ASP TYR SER LEU ILE GLN ASP PRO LYS TYR LEU SER ILE SEQRES 20 C 294 VAL LYS GLU TYR ALA ASN ASP GLN ASP LYS PHE PHE LYS SEQRES 21 C 294 ASP PHE SER LYS ALA PHE GLU LYS LEU LEU GLU ASN GLY SEQRES 22 C 294 ILE THR PHE PRO LYS ASP ALA PRO SER PRO PHE ILE PHE SEQRES 23 C 294 LYS THR LEU GLU GLU GLN GLY LEU SEQRES 1 D 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 D 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 D 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 D 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 D 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 D 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 D 108 TYR ILE PRO GLY THR LYS MET CYS PHE GLY GLY LEU LYS SEQRES 8 D 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 D 108 LYS ALA THR GLU HET IOD A 800 1 HET HEC A 296 43 HET HEC B 104 43 HET HEC C 296 43 HET HEC D 104 43 HETNAM IOD IODIDE ION HETNAM HEC HEME C FORMUL 5 IOD I 1- FORMUL 6 HEC 4(C34 H34 FE N4 O4) FORMUL 10 HOH *732(H2 O) HELIX 1 1 SER A 15 ASP A 33 1 19 HELIX 2 2 GLU A 35 ILE A 40 1 6 HELIX 3 3 TYR A 42 GLY A 55 1 14 HELIX 4 4 GLY A 69 ARG A 72 5 4 HELIX 5 5 PHE A 73 ASN A 78 1 6 HELIX 6 6 ASP A 79 ALA A 83 5 5 HELIX 7 7 GLY A 84 GLY A 84 5 1 HELIX 8 8 LEU A 85 PHE A 99 1 15 HELIX 9 9 SER A 103 MET A 119 1 17 HELIX 10 10 PRO A 134 THR A 138 5 5 HELIX 11 11 ASP A 150 ARG A 160 1 11 HELIX 12 12 ASN A 164 GLY A 173 1 10 HELIX 13 13 ALA A 174 LEU A 177 5 4 HELIX 14 14 HIS A 181 GLY A 186 1 6 HELIX 15 15 ASN A 200 GLU A 209 1 10 HELIX 16 16 LEU A 232 ASP A 241 1 10 HELIX 17 17 ASP A 241 ASN A 253 1 13 HELIX 18 18 ASP A 254 ASN A 272 1 19 HELIX 19 19 LEU A 289 GLY A 293 5 5 HELIX 20 20 SER B 2 CYS B 14 1 13 HELIX 21 21 THR B 49 ASN B 56 1 8 HELIX 22 22 ASP B 60 ASN B 70 1 11 HELIX 23 23 ASN B 70 ILE B 75 1 6 HELIX 24 24 LYS B 87 GLU B 103 1 17 HELIX 25 25 SER C 15 ASP C 33 1 19 HELIX 26 26 GLU C 35 ILE C 40 1 6 HELIX 27 27 TYR C 42 GLY C 55 1 14 HELIX 28 28 GLY C 69 ARG C 72 5 4 HELIX 29 29 PHE C 73 ASN C 78 1 6 HELIX 30 30 ASP C 79 ALA C 83 5 5 HELIX 31 31 LEU C 85 PHE C 99 1 15 HELIX 32 32 SER C 103 MET C 119 1 17 HELIX 33 33 PRO C 134 THR C 138 5 5 HELIX 34 34 ASP C 150 ARG C 160 1 11 HELIX 35 35 ASN C 164 GLY C 173 1 10 HELIX 36 36 ALA C 174 LEU C 177 5 4 HELIX 37 37 HIS C 181 GLY C 186 1 6 HELIX 38 38 ASN C 200 GLU C 209 1 10 HELIX 39 39 LEU C 232 ASP C 241 1 10 HELIX 40 40 ASP C 241 ASP C 254 1 14 HELIX 41 41 ASP C 254 ASN C 272 1 19 HELIX 42 42 LEU C 289 GLY C 293 5 5 HELIX 43 43 SER D 2 CYS D 14 1 13 HELIX 44 44 THR D 49 ASN D 56 1 8 HELIX 45 45 ASP D 60 ASN D 70 1 11 HELIX 46 46 ASN D 70 ILE D 75 1 6 HELIX 47 47 LYS D 87 THR D 102 1 16 SHEET 1 A 3 TRP A 211 LYS A 215 0 SHEET 2 A 3 GLU A 221 SER A 225 -1 O GLN A 222 N GLU A 214 SHEET 3 A 3 MET A 230 MET A 231 -1 O MET A 231 N TRP A 223 SHEET 1 B 2 HIS C 6 VAL C 7 0 SHEET 2 B 2 ILE C 274 THR C 275 1 O THR C 275 N HIS C 6 SHEET 1 C 2 LYS C 179 THR C 180 0 SHEET 2 C 2 GLY C 189 PRO C 190 -1 O GLY C 189 N THR C 180 SHEET 1 D 3 LYS C 212 LYS C 215 0 SHEET 2 D 3 GLU C 221 ASP C 224 -1 O ASP C 224 N LYS C 212 SHEET 3 D 3 MET C 230 MET C 231 -1 O MET C 231 N TRP C 223 SSBOND 1 CYS A 197 CYS B 81 1555 1555 2.04 SSBOND 2 CYS C 197 CYS D 81 1555 1555 2.04 LINK SG CYS B 14 CAB HEC B 104 1555 1555 2.21 LINK SG CYS B 17 CAC HEC B 104 1555 1555 2.29 LINK SG CYS D 14 CAB HEC D 104 1555 1555 2.28 LINK SG CYS D 17 CAC HEC D 104 1555 1555 2.29 LINK NE2 HIS A 175 FE HEC A 296 1555 1555 2.08 LINK FE HEC A 296 O HOH A1039 1555 1555 3.11 LINK NE2 HIS B 18 FE HEC B 104 1555 1555 2.03 LINK SD MET B 80 FE HEC B 104 1555 1555 2.23 LINK NE2 HIS C 175 FE HEC C 296 1555 1555 2.11 LINK FE HEC C 296 O HOH C 409 1555 1555 2.92 LINK NE2 HIS D 18 FE HEC D 104 1555 1555 2.05 LINK SD MET D 80 FE HEC D 104 1555 1555 2.14 SITE 1 AC1 1 ALA A 8 SITE 1 AC2 23 PRO A 44 VAL A 45 ARG A 48 TRP A 51 SITE 2 AC2 23 PRO A 145 ALA A 147 LEU A 171 ALA A 174 SITE 3 AC2 23 HIS A 175 LEU A 177 GLY A 178 LYS A 179 SITE 4 AC2 23 THR A 180 HIS A 181 ASN A 184 SER A 185 SITE 5 AC2 23 TRP A 191 LEU A 232 THR A 234 HOH A 804 SITE 6 AC2 23 HOH A 812 HOH A 824 HOH A1039 SITE 1 AC3 23 ALA A 193 ARG B 13 CYS B 14 CYS B 17 SITE 2 AC3 23 HIS B 18 VAL B 28 PRO B 30 ILE B 35 SITE 3 AC3 23 SER B 40 GLY B 41 TYR B 46 TYR B 48 SITE 4 AC3 23 THR B 49 ASN B 52 TRP B 59 MET B 64 SITE 5 AC3 23 TYR B 67 THR B 78 LYS B 79 MET B 80 SITE 6 AC3 23 CYS B 81 PHE B 82 HOH B 156 SITE 1 AC4 22 PRO C 44 VAL C 45 TRP C 51 PRO C 145 SITE 2 AC4 22 ALA C 147 LEU C 171 ALA C 174 HIS C 175 SITE 3 AC4 22 LEU C 177 GLY C 178 LYS C 179 THR C 180 SITE 4 AC4 22 HIS C 181 ASN C 184 SER C 185 TRP C 191 SITE 5 AC4 22 LEU C 232 THR C 234 HOH C 307 HOH C 314 SITE 6 AC4 22 HOH C 323 HOH C 409 SITE 1 AC5 21 ALA C 193 ARG D 13 CYS D 14 CYS D 17 SITE 2 AC5 21 HIS D 18 VAL D 28 SER D 40 GLY D 41 SITE 3 AC5 21 TYR D 46 TYR D 48 THR D 49 ASN D 52 SITE 4 AC5 21 TRP D 59 MET D 64 TYR D 67 THR D 78 SITE 5 AC5 21 LYS D 79 MET D 80 PHE D 82 LEU D 94 SITE 6 AC5 21 HOH D 132 CRYST1 45.240 107.920 88.380 90.00 104.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022104 0.000000 0.005684 0.00000 SCALE2 0.000000 0.009266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011683 0.00000