HEADER ANTIBIOTIC 28-JAN-04 1S6W TITLE SOLUTION STRUCTURE OF HYBRID WHITE STRIPED BASS HEPCIDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPCIDIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEPCIDIN, MATURE FORM (RESIDUES 65-85); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PROTEIN WAS CHEMICALLY SYNTHESIZED, THE SEQUENCE SOURCE 4 OF THE PROTEIN OCCURS NATURALLY IN HYBRID WHITE STRIPED BASS KEYWDS TWO STRAND ANTIPARALELL BETA SHEET, ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.J.BABON,S.SINGH,M.W.PENNINGTON,R.S.NORTON,M.E.WESTERMAN REVDAT 4 02-MAR-22 1S6W 1 REMARK REVDAT 3 24-FEB-09 1S6W 1 VERSN REVDAT 2 19-APR-05 1S6W 1 JRNL REVDAT 1 14-DEC-04 1S6W 0 JRNL AUTH X.LAUTH,J.J.BABON,J.A.STANNARD,S.SINGH,V.NIZET,J.M.CARLBERG, JRNL AUTH 2 V.E.OSTLAND,M.W.PENNINGTON,R.S.NORTON,M.E.WESTERMAN JRNL TITL BASS HEPCIDIN SYNTHESIS, SOLUTION STRUCTURE, ANTIMICROBIAL JRNL TITL 2 ACTIVITIES AND SYNERGISM, AND IN VIVO HEPATIC RESPONSE TO JRNL TITL 3 BACTERIAL INFECTIONS. JRNL REF J.BIOL.CHEM. V. 280 9272 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15546886 JRNL DOI 10.1074/JBC.M411154200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR-NIH 2.0.6, X-PLOR-NIH 2.0.6 REMARK 3 AUTHORS : C.D.SCHWIETERS, J.J.KUSZEWSKI, N.TJANDRA AND REMARK 3 G.M.CLORE (X-PLOR-NIH), C.D.SCHWIETERS, REMARK 3 J.J.KUSZEWSKI, N.TJANDRA AND G.M.CLORE (X-PLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 188 NOE REMARK 3 -DERIVED DISTANCE CONSTRAINTS, 238 DIHEDRAL ANGLE RESTRAINTS, 4 REMARK 3 DISTANCE RESTRAINTSFROM HYDROGEN BONDS REMARK 4 REMARK 4 1S6W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021442. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 4.7; 4.5 REMARK 210 IONIC STRENGTH : 0; 10MM CD3COONA REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 3.5MM HEPCIDIN, 95% H2O, 5% D2O, REMARK 210 PH=4.7; 3.5MM HEPCIDIN, 100% D2O, REMARK 210 10MM CD3COONA, PH=4.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; 2D TOCSY; 2D NOESY; E REMARK 210 -COSY; 13C-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1, XWINNMR 3.5 REMARK 210 METHOD USED : SIMULATED ANNEALING MOLECULAR REMARK 210 DYNAMICS TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : THE SUBMITTED CONFORMER MODELS REMARK 210 ARE THE 20 STRUCTURES WITH THE REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 4 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES AND CHEMICAL SHIFT DATA WAS OBTAINED REMARK 210 USING STANDARD 2D HETERONUCLEAR TECHNIQUES PERFORMED AT NATURAL REMARK 210 ABUNDANCE ISOTOPE LEVELS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 3 H CYS A 18 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 7 55.52 -170.57 REMARK 500 1 ASN A 11 24.69 -153.96 REMARK 500 2 CYS A 6 51.29 -117.63 REMARK 500 2 ASN A 7 54.67 -178.87 REMARK 500 2 ASN A 11 -40.43 -141.99 REMARK 500 3 ASN A 7 68.35 -174.33 REMARK 500 3 PRO A 10 48.43 -73.45 REMARK 500 3 ASN A 11 47.98 -161.18 REMARK 500 3 SER A 13 48.82 -94.87 REMARK 500 4 ASN A 7 69.24 -169.57 REMARK 500 4 ASN A 11 33.94 -160.85 REMARK 500 5 ASN A 7 101.15 -178.28 REMARK 500 5 CYS A 8 -40.01 -139.34 REMARK 500 5 ASN A 11 24.53 -159.33 REMARK 500 5 MET A 12 88.75 -174.38 REMARK 500 6 CYS A 6 42.26 -106.19 REMARK 500 6 ASN A 7 52.63 -172.59 REMARK 500 6 PRO A 10 46.34 -74.78 REMARK 500 6 ASN A 11 41.09 -160.67 REMARK 500 6 SER A 13 38.38 -96.39 REMARK 500 7 ASN A 7 133.41 -179.16 REMARK 500 7 CYS A 8 -40.08 -169.07 REMARK 500 7 ASN A 11 34.74 -160.90 REMARK 500 7 MET A 12 80.91 -175.78 REMARK 500 8 ASN A 7 59.34 -162.70 REMARK 500 8 ASN A 11 32.08 -160.25 REMARK 500 9 CYS A 6 46.40 -96.93 REMARK 500 9 ASN A 7 63.69 -175.12 REMARK 500 9 PRO A 10 49.70 -71.08 REMARK 500 9 ASN A 11 48.41 -161.47 REMARK 500 10 ASN A 7 64.39 -170.35 REMARK 500 10 ASN A 11 17.41 -146.50 REMARK 500 10 SER A 13 54.78 -98.19 REMARK 500 11 ASN A 7 100.53 -174.04 REMARK 500 11 CYS A 8 -40.60 -145.35 REMARK 500 11 ASN A 11 26.71 -156.12 REMARK 500 11 MET A 12 99.77 -173.12 REMARK 500 12 ASN A 7 44.91 -175.73 REMARK 500 12 ASN A 11 -49.26 -152.66 REMARK 500 13 CYS A 6 33.38 -97.07 REMARK 500 13 ASN A 7 98.42 -174.51 REMARK 500 13 ASN A 11 21.67 -154.45 REMARK 500 13 MET A 12 104.35 -160.78 REMARK 500 14 ASN A 7 123.68 -177.07 REMARK 500 14 CYS A 8 -44.04 -176.87 REMARK 500 14 ASN A 11 32.88 -144.90 REMARK 500 14 MET A 12 103.56 -173.11 REMARK 500 15 ASN A 7 103.25 -164.67 REMARK 500 15 CYS A 8 -42.68 -141.59 REMARK 500 15 ASN A 11 36.25 -160.95 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1S6W A 1 21 UNP P82951 HEPC_MORCS 65 85 SEQRES 1 A 21 GLY CYS ARG PHE CYS CYS ASN CYS CYS PRO ASN MET SER SEQRES 2 A 21 GLY CYS GLY VAL CYS CYS ARG PHE SHEET 1 A 2 ARG A 3 CYS A 5 0 SHEET 2 A 2 GLY A 16 CYS A 18 -1 O CYS A 18 N ARG A 3 SSBOND 1 CYS A 2 CYS A 19 1555 1555 2.02 SSBOND 2 CYS A 5 CYS A 18 1555 1555 2.02 SSBOND 3 CYS A 6 CYS A 15 1555 1555 2.02 SSBOND 4 CYS A 8 CYS A 9 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1