HEADER LYASE 28-JAN-04 1S71 OBSLTE 02-MAR-04 1S71 1SGV TITLE STRUCTURE OF TRNA PSI55 PSEUDOURIDINE SYNTHASE (TRUB) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA PSEUDOURIDINE SYNTHASE B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRNA PSEUDOURIDINE 55 SYNTHASE, PSI55 SYNTHASE, COMPND 5 PSEUDOURIDYLATE SYNTHASE, URACIL HYDROLYASE; COMPND 6 EC: 4.2.1.70; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: TRUB, RV2793C, MT2862.1, MTV002.58C, MB2816C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS TRNA MODIFICATION EXPDTA X-RAY DIFFRACTION AUTHOR B.N.CHAUDHURI,S.CHAN,L.J.PERRY,T.O.YEATES REVDAT 2 02-MAR-04 1S71 1 OBSLTE REVDAT 1 10-FEB-04 1S71 0 JRNL AUTH B.N.CHAUDHURI,S.CHAN,L.J.PERRY,T.O.YEATES JRNL TITL CRYSTAL STRUCTURE OF PSI55 TRNA PSEUDOURIDINE JRNL TITL 2 SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 48859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2551 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3521 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 4381 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.491 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3963 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5359 ; 0.973 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 524 ; 5.461 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 646 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2958 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1772 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 374 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.191 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2607 ; 0.387 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4150 ; 0.749 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1356 ; 1.254 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1209 ; 2.258 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 0 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 72 REMARK 3 RESIDUE RANGE : A 198 A 234 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3490 -1.2050 25.3710 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.1656 REMARK 3 T33: 0.1608 T12: -0.0341 REMARK 3 T13: 0.0723 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.6396 L22: 3.5439 REMARK 3 L33: 3.5884 L12: -0.4657 REMARK 3 L13: -2.3148 L23: 1.8837 REMARK 3 S TENSOR REMARK 3 S11: 0.2361 S12: 0.1123 S13: 0.3220 REMARK 3 S21: -0.7556 S22: 0.2168 S23: -0.5189 REMARK 3 S31: -0.5807 S32: 0.0578 S33: -0.4528 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7580 3.9830 43.0540 REMARK 3 T TENSOR REMARK 3 T11: 0.0238 T22: 0.1583 REMARK 3 T33: 0.1207 T12: 0.0130 REMARK 3 T13: -0.0437 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 3.9918 L22: 3.0537 REMARK 3 L33: 2.5842 L12: -1.5462 REMARK 3 L13: -1.8910 L23: 1.1111 REMARK 3 S TENSOR REMARK 3 S11: 0.0794 S12: 0.1092 S13: 0.0865 REMARK 3 S21: -0.1418 S22: 0.0199 S23: 0.0934 REMARK 3 S31: -0.0505 S32: 0.0046 S33: -0.0994 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 235 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5460 -21.7970 11.2230 REMARK 3 T TENSOR REMARK 3 T11: 0.4250 T22: 0.2329 REMARK 3 T33: 0.1029 T12: -0.0039 REMARK 3 T13: 0.1046 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 2.5481 L22: 7.8934 REMARK 3 L33: 5.4084 L12: 0.5248 REMARK 3 L13: 1.2954 L23: 1.1599 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.4311 S13: 0.0949 REMARK 3 S21: -1.2500 S22: -0.0749 S23: -0.4293 REMARK 3 S31: -0.0680 S32: 0.2617 S33: 0.0614 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 72 REMARK 3 RESIDUE RANGE : B 198 B 234 REMARK 3 ORIGIN FOR THE GROUP (A): -25.8400 1.4320 55.7380 REMARK 3 T TENSOR REMARK 3 T11: 0.0351 T22: 0.1870 REMARK 3 T33: 0.0783 T12: 0.0082 REMARK 3 T13: -0.0256 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 1.8267 L22: 3.5190 REMARK 3 L33: 2.5150 L12: -0.2936 REMARK 3 L13: 0.5849 L23: -0.7864 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: -0.0604 S13: -0.1679 REMARK 3 S21: 0.2216 S22: 0.0939 S23: 0.2355 REMARK 3 S31: 0.0831 S32: -0.1744 S33: -0.1290 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 197 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1410 -1.6860 81.0340 REMARK 3 T TENSOR REMARK 3 T11: 0.3957 T22: 0.2458 REMARK 3 T33: 0.0414 T12: 0.0066 REMARK 3 T13: -0.0510 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 3.3709 L22: 3.0932 REMARK 3 L33: 7.6919 L12: -2.1632 REMARK 3 L13: 3.4159 L23: -3.5265 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: 0.1911 S13: 0.0349 REMARK 3 S21: 0.1507 S22: -0.0076 S23: -0.0683 REMARK 3 S31: 0.0570 S32: 0.1773 S33: -0.0181 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 235 B 294 REMARK 3 ORIGIN FOR THE GROUP (A): -22.9760 22.3630 42.2850 REMARK 3 T TENSOR REMARK 3 T11: 0.1342 T22: 0.1463 REMARK 3 T33: 0.0507 T12: 0.0382 REMARK 3 T13: -0.0253 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 3.3805 L22: 9.5849 REMARK 3 L33: 4.1223 L12: -0.4302 REMARK 3 L13: -1.0614 L23: 0.4694 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: 0.2676 S13: -0.1083 REMARK 3 S21: -0.6904 S22: -0.0115 S23: -0.0416 REMARK 3 S31: -0.1021 S32: -0.0294 S33: -0.0510 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S71 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-2004. REMARK 100 THE RCSB ID CODE IS RCSB021447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0322 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51411 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB CODE 1K8W PROTEIN COMPONENT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, TRIS BUFFER, REMARK 280 PEG3350, PH 7.5, MICROSEEDING, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,1/2+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.05000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 115 REMARK 465 GLN A 116 REMARK 465 VAL A 117 REMARK 465 PRO A 118 REMARK 465 SER A 119 REMARK 465 SER A 120 REMARK 465 VAL A 121 REMARK 465 SER A 122 REMARK 465 ALA A 123 REMARK 465 ILE A 124 REMARK 465 LYS A 125 REMARK 465 VAL A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 ARG A 129 REMARK 465 ARG A 130 REMARK 465 ALA A 131 REMARK 465 TYR A 132 REMARK 465 ARG A 133 REMARK 465 LEU A 134 REMARK 465 ALA A 135 REMARK 465 ARG A 136 REMARK 465 GLN A 137 REMARK 465 GLY A 138 REMARK 465 ARG A 139 REMARK 465 SER A 140 REMARK 465 VAL A 141 REMARK 465 GLN A 142 REMARK 465 ALA A 293 REMARK 465 THR A 294 REMARK 465 MET A 295 REMARK 465 HIS A 296 REMARK 465 PRO A 297 REMARK 465 GLY A 298 REMARK 465 GLY A 299 REMARK 465 VAL A 300 REMARK 465 PRO A 301 REMARK 465 ARG A 302 REMARK 465 GLY A 303 REMARK 465 LYS A 304 REMARK 465 LEU A 305 REMARK 465 ALA A 306 REMARK 465 ALA A 307 REMARK 465 ALA A 308 REMARK 465 LEU A 309 REMARK 465 GLU A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 GLY B 112 REMARK 465 GLU B 113 REMARK 465 ILE B 114 REMARK 465 ARG B 115 REMARK 465 GLN B 116 REMARK 465 VAL B 117 REMARK 465 PRO B 118 REMARK 465 SER B 119 REMARK 465 SER B 120 REMARK 465 VAL B 121 REMARK 465 SER B 122 REMARK 465 ALA B 123 REMARK 465 ILE B 124 REMARK 465 LYS B 125 REMARK 465 VAL B 126 REMARK 465 GLY B 127 REMARK 465 GLY B 128 REMARK 465 ARG B 129 REMARK 465 ARG B 130 REMARK 465 ALA B 131 REMARK 465 TYR B 132 REMARK 465 ARG B 133 REMARK 465 LEU B 134 REMARK 465 ALA B 135 REMARK 465 ARG B 136 REMARK 465 GLN B 137 REMARK 465 GLY B 138 REMARK 465 ARG B 139 REMARK 465 MET B 295 REMARK 465 HIS B 296 REMARK 465 PRO B 297 REMARK 465 GLY B 298 REMARK 465 GLY B 299 REMARK 465 VAL B 300 REMARK 465 PRO B 301 REMARK 465 ARG B 302 REMARK 465 GLY B 303 REMARK 465 LYS B 304 REMARK 465 LEU B 305 REMARK 465 ALA B 306 REMARK 465 ALA B 307 REMARK 465 ALA B 308 REMARK 465 LEU B 309 REMARK 465 GLU B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 465 HIS B 313 REMARK 465 HIS B 314 REMARK 465 HIS B 315 REMARK 465 HIS B 316 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 114 CB CG1 CG2 CD1 REMARK 470 LEU A 143 CB CG CD1 CD2 REMARK 470 MET B 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 172 N - CA - C ANGL. DEV. = -7.8 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 162 -110.36 56.03 REMARK 500 ASP B 162 -106.40 56.97 REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 421 DISTANCE = 5.09 ANGSTROMS DBREF 1S71 A 1 298 UNP O33335 TRUB_MYCTU 1 298 DBREF 1S71 B 1 298 UNP O33335 TRUB_MYCTU 1 298 SEQADV 1S71 GLY A 299 UNP O33335 CLONING ARTIFACT SEQADV 1S71 VAL A 300 UNP O33335 CLONING ARTIFACT SEQADV 1S71 PRO A 301 UNP O33335 CLONING ARTIFACT SEQADV 1S71 ARG A 302 UNP O33335 CLONING ARTIFACT SEQADV 1S71 GLY A 303 UNP O33335 CLONING ARTIFACT SEQADV 1S71 LYS A 304 UNP O33335 CLONING ARTIFACT SEQADV 1S71 LEU A 305 UNP O33335 CLONING ARTIFACT SEQADV 1S71 ALA A 306 UNP O33335 CLONING ARTIFACT SEQADV 1S71 ALA A 307 UNP O33335 CLONING ARTIFACT SEQADV 1S71 ALA A 308 UNP O33335 CLONING ARTIFACT SEQADV 1S71 LEU A 309 UNP O33335 CLONING ARTIFACT SEQADV 1S71 GLU A 310 UNP O33335 CLONING ARTIFACT SEQADV 1S71 HIS A 311 UNP O33335 CLONING ARTIFACT SEQADV 1S71 HIS A 312 UNP O33335 CLONING ARTIFACT SEQADV 1S71 HIS A 313 UNP O33335 CLONING ARTIFACT SEQADV 1S71 HIS A 314 UNP O33335 CLONING ARTIFACT SEQADV 1S71 HIS A 315 UNP O33335 CLONING ARTIFACT SEQADV 1S71 HIS A 316 UNP O33335 CLONING ARTIFACT SEQADV 1S71 GLY B 299 UNP O33335 CLONING ARTIFACT SEQADV 1S71 VAL B 300 UNP O33335 CLONING ARTIFACT SEQADV 1S71 PRO B 301 UNP O33335 CLONING ARTIFACT SEQADV 1S71 ARG B 302 UNP O33335 CLONING ARTIFACT SEQADV 1S71 GLY B 303 UNP O33335 CLONING ARTIFACT SEQADV 1S71 LYS B 304 UNP O33335 CLONING ARTIFACT SEQADV 1S71 LEU B 305 UNP O33335 CLONING ARTIFACT SEQADV 1S71 ALA B 306 UNP O33335 CLONING ARTIFACT SEQADV 1S71 ALA B 307 UNP O33335 CLONING ARTIFACT SEQADV 1S71 ALA B 308 UNP O33335 CLONING ARTIFACT SEQADV 1S71 LEU B 309 UNP O33335 CLONING ARTIFACT SEQADV 1S71 GLU B 310 UNP O33335 CLONING ARTIFACT SEQADV 1S71 HIS B 311 UNP O33335 CLONING ARTIFACT SEQADV 1S71 HIS B 312 UNP O33335 CLONING ARTIFACT SEQADV 1S71 HIS B 313 UNP O33335 CLONING ARTIFACT SEQADV 1S71 HIS B 314 UNP O33335 CLONING ARTIFACT SEQADV 1S71 HIS B 315 UNP O33335 CLONING ARTIFACT SEQADV 1S71 HIS B 316 UNP O33335 CLONING ARTIFACT SEQRES 1 A 316 MET SER ALA THR GLY PRO GLY ILE VAL VAL ILE ASP LYS SEQRES 2 A 316 PRO ALA GLY MET THR SER HIS ASP VAL VAL GLY ARG CYS SEQRES 3 A 316 ARG ARG ILE PHE ALA THR ARG ARG VAL GLY HIS ALA GLY SEQRES 4 A 316 THR LEU ASP PRO MET ALA THR GLY VAL LEU VAL ILE GLY SEQRES 5 A 316 ILE GLU ARG ALA THR LYS ILE LEU GLY LEU LEU THR ALA SEQRES 6 A 316 ALA PRO LYS SER TYR ALA ALA THR ILE ARG LEU GLY GLN SEQRES 7 A 316 THR THR SER THR GLU ASP ALA GLU GLY GLN VAL LEU GLN SEQRES 8 A 316 SER VAL PRO ALA LYS HIS LEU THR ILE GLU ALA ILE ASP SEQRES 9 A 316 ALA ALA MET GLU ARG LEU ARG GLY GLU ILE ARG GLN VAL SEQRES 10 A 316 PRO SER SER VAL SER ALA ILE LYS VAL GLY GLY ARG ARG SEQRES 11 A 316 ALA TYR ARG LEU ALA ARG GLN GLY ARG SER VAL GLN LEU SEQRES 12 A 316 GLU ALA ARG PRO ILE ARG ILE ASP ARG PHE GLU LEU LEU SEQRES 13 A 316 ALA ALA ARG ARG ARG ASP GLN LEU ILE ASP ILE ASP VAL SEQRES 14 A 316 GLU ILE ASP CYS SER SER GLY THR TYR ILE ARG ALA LEU SEQRES 15 A 316 ALA ARG ASP LEU GLY ASP ALA LEU GLY VAL GLY GLY HIS SEQRES 16 A 316 VAL THR ALA LEU ARG ARG THR ARG VAL GLY ARG PHE GLU SEQRES 17 A 316 LEU ASP GLN ALA ARG SER LEU ASP ASP LEU ALA GLU ARG SEQRES 18 A 316 PRO ALA LEU SER LEU SER LEU ASP GLU ALA CYS LEU LEU SEQRES 19 A 316 MET PHE ALA ARG ARG ASP LEU THR ALA ALA GLU ALA SER SEQRES 20 A 316 ALA ALA ALA ASN GLY ARG SER LEU PRO ALA VAL GLY ILE SEQRES 21 A 316 ASP GLY VAL TYR ALA ALA CYS ASP ALA ASP GLY ARG VAL SEQRES 22 A 316 ILE ALA LEU LEU ARG ASP GLU GLY SER ARG THR ARG SER SEQRES 23 A 316 VAL ALA VAL LEU ARG PRO ALA THR MET HIS PRO GLY GLY SEQRES 24 A 316 VAL PRO ARG GLY LYS LEU ALA ALA ALA LEU GLU HIS HIS SEQRES 25 A 316 HIS HIS HIS HIS SEQRES 1 B 316 MET SER ALA THR GLY PRO GLY ILE VAL VAL ILE ASP LYS SEQRES 2 B 316 PRO ALA GLY MET THR SER HIS ASP VAL VAL GLY ARG CYS SEQRES 3 B 316 ARG ARG ILE PHE ALA THR ARG ARG VAL GLY HIS ALA GLY SEQRES 4 B 316 THR LEU ASP PRO MET ALA THR GLY VAL LEU VAL ILE GLY SEQRES 5 B 316 ILE GLU ARG ALA THR LYS ILE LEU GLY LEU LEU THR ALA SEQRES 6 B 316 ALA PRO LYS SER TYR ALA ALA THR ILE ARG LEU GLY GLN SEQRES 7 B 316 THR THR SER THR GLU ASP ALA GLU GLY GLN VAL LEU GLN SEQRES 8 B 316 SER VAL PRO ALA LYS HIS LEU THR ILE GLU ALA ILE ASP SEQRES 9 B 316 ALA ALA MET GLU ARG LEU ARG GLY GLU ILE ARG GLN VAL SEQRES 10 B 316 PRO SER SER VAL SER ALA ILE LYS VAL GLY GLY ARG ARG SEQRES 11 B 316 ALA TYR ARG LEU ALA ARG GLN GLY ARG SER VAL GLN LEU SEQRES 12 B 316 GLU ALA ARG PRO ILE ARG ILE ASP ARG PHE GLU LEU LEU SEQRES 13 B 316 ALA ALA ARG ARG ARG ASP GLN LEU ILE ASP ILE ASP VAL SEQRES 14 B 316 GLU ILE ASP CYS SER SER GLY THR TYR ILE ARG ALA LEU SEQRES 15 B 316 ALA ARG ASP LEU GLY ASP ALA LEU GLY VAL GLY GLY HIS SEQRES 16 B 316 VAL THR ALA LEU ARG ARG THR ARG VAL GLY ARG PHE GLU SEQRES 17 B 316 LEU ASP GLN ALA ARG SER LEU ASP ASP LEU ALA GLU ARG SEQRES 18 B 316 PRO ALA LEU SER LEU SER LEU ASP GLU ALA CYS LEU LEU SEQRES 19 B 316 MET PHE ALA ARG ARG ASP LEU THR ALA ALA GLU ALA SER SEQRES 20 B 316 ALA ALA ALA ASN GLY ARG SER LEU PRO ALA VAL GLY ILE SEQRES 21 B 316 ASP GLY VAL TYR ALA ALA CYS ASP ALA ASP GLY ARG VAL SEQRES 22 B 316 ILE ALA LEU LEU ARG ASP GLU GLY SER ARG THR ARG SER SEQRES 23 B 316 VAL ALA VAL LEU ARG PRO ALA THR MET HIS PRO GLY GLY SEQRES 24 B 316 VAL PRO ARG GLY LYS LEU ALA ALA ALA LEU GLU HIS HIS SEQRES 25 B 316 HIS HIS HIS HIS FORMUL 3 HOH *451(H2 O1) HELIX 1 1 THR A 18 PHE A 30 1 13 HELIX 2 2 ARG A 55 LEU A 63 5 9 HELIX 3 3 THR A 99 LEU A 110 1 12 HELIX 4 4 TYR A 178 LEU A 190 1 13 HELIX 5 5 ASP A 210 ALA A 212 5 3 HELIX 6 6 SER A 214 ARG A 221 1 8 HELIX 7 7 LEU A 228 PHE A 236 1 9 HELIX 8 8 THR A 242 ASN A 251 1 10 HELIX 9 9 THR B 18 PHE B 30 1 13 HELIX 10 10 ARG B 55 LYS B 58 5 4 HELIX 11 11 ILE B 59 THR B 64 1 6 HELIX 12 12 THR B 99 ARG B 111 1 13 HELIX 13 13 TYR B 178 LEU B 190 1 13 HELIX 14 14 ASP B 210 ALA B 212 5 3 HELIX 15 15 SER B 214 ARG B 221 1 8 HELIX 16 16 LEU B 228 PHE B 236 1 9 HELIX 17 17 THR B 242 ASN B 251 1 10 SHEET 1 A 4 VAL A 35 HIS A 37 0 SHEET 2 A 4 THR A 46 ILE A 53 -1 O GLY A 52 N GLY A 36 SHEET 3 A 4 GLY A 194 VAL A 204 1 O ARG A 201 N THR A 46 SHEET 4 A 4 PHE A 207 GLU A 208 -1 O PHE A 207 N VAL A 204 SHEET 1 B 8 GLY A 112 ILE A 114 0 SHEET 2 B 8 ILE A 148 ARG A 161 -1 O ILE A 148 N ILE A 114 SHEET 3 B 8 LEU A 164 CYS A 173 -1 O ASP A 168 N LEU A 156 SHEET 4 B 8 LYS A 68 LEU A 76 -1 N LEU A 76 O ILE A 165 SHEET 5 B 8 GLY A 194 VAL A 204 -1 O HIS A 195 N ARG A 75 SHEET 6 B 8 THR A 46 ILE A 53 1 N THR A 46 O ARG A 201 SHEET 7 B 8 GLY A 7 LYS A 13 -1 N GLY A 7 O ILE A 53 SHEET 8 B 8 LEU A 226 SER A 227 -1 O LEU A 226 N ILE A 8 SHEET 1 C 2 GLN A 78 THR A 80 0 SHEET 2 C 2 VAL A 89 SER A 92 -1 O LEU A 90 N THR A 79 SHEET 1 D 4 ALA A 237 ASP A 240 0 SHEET 2 D 4 TYR A 264 CYS A 267 1 O ALA A 265 N ALA A 237 SHEET 3 D 4 VAL A 273 GLU A 280 -1 O ALA A 275 N ALA A 266 SHEET 4 D 4 ARG A 283 VAL A 289 -1 O ALA A 288 N LEU A 276 SHEET 1 E 4 VAL B 35 HIS B 37 0 SHEET 2 E 4 THR B 46 ILE B 53 -1 O GLY B 52 N GLY B 36 SHEET 3 E 4 GLY B 194 VAL B 204 1 O ARG B 201 N THR B 46 SHEET 4 E 4 PHE B 207 GLU B 208 -1 O PHE B 207 N VAL B 204 SHEET 1 F 7 ILE B 150 ARG B 161 0 SHEET 2 F 7 LEU B 164 CYS B 173 -1 O ASP B 166 N ARG B 159 SHEET 3 F 7 LYS B 68 LEU B 76 -1 N LEU B 76 O ILE B 165 SHEET 4 F 7 GLY B 194 VAL B 204 -1 O HIS B 195 N ARG B 75 SHEET 5 F 7 THR B 46 ILE B 53 1 N THR B 46 O ARG B 201 SHEET 6 F 7 GLY B 7 LYS B 13 -1 N VAL B 9 O ILE B 51 SHEET 7 F 7 LEU B 226 SER B 227 -1 O LEU B 226 N ILE B 8 SHEET 1 G 2 GLN B 78 THR B 80 0 SHEET 2 G 2 VAL B 89 SER B 92 -1 O LEU B 90 N THR B 79 SHEET 1 H 4 ALA B 237 ASP B 240 0 SHEET 2 H 4 TYR B 264 CYS B 267 1 O ALA B 265 N ALA B 237 SHEET 3 H 4 VAL B 273 GLU B 280 -1 O ALA B 275 N ALA B 266 SHEET 4 H 4 ARG B 283 VAL B 289 -1 O ARG B 285 N ARG B 278 CRYST1 45.948 94.100 78.508 90.00 100.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021764 0.000000 0.003979 0.00000 SCALE2 0.000000 0.010627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012949 0.00000