HEADER OXIDOREDUCTASE 04-FEB-04 1S9A TITLE CRYSTAL STRUCTURE OF 4-CHLOROCATECHOL 1,2-DIOXYGENASE FROM RHODOCOCCUS TITLE 2 OPACUS 1CP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLOROCATECHOL 1,2-DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PYROCATECHASE; COMPND 5 EC: 1.13.11.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS OPACUS; SOURCE 3 ORGANISM_TAXID: 37919; SOURCE 4 STRAIN: 1CP KEYWDS BETA BARREL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FERRARONI,I.P.SOLYANIKOVA,M.P.KOLOMYTSEVA,A.SCOZZAFAVA, AUTHOR 2 L.A.GOLOVLEVA,F.BRIGANTI REVDAT 5 14-FEB-24 1S9A 1 REMARK LINK REVDAT 4 11-OCT-17 1S9A 1 REMARK REVDAT 3 24-FEB-09 1S9A 1 VERSN REVDAT 2 10-AUG-04 1S9A 1 JRNL REVDAT 1 01-JUN-04 1S9A 0 JRNL AUTH M.FERRARONI,I.P.SOLYANIKOVA,M.P.KOLOMYTSEVA,A.SCOZZAFAVA, JRNL AUTH 2 L.GOLOVLEVA,F.BRIGANTI JRNL TITL CRYSTAL STRUCTURE OF 4-CHLOROCATECHOL 1,2-DIOXYGENASE FROM JRNL TITL 2 THE CHLOROPHENOL-UTILIZING GRAM-POSITIVE RHODOCOCCUS OPACUS JRNL TITL 3 1CP. JRNL REF J.BIOL.CHEM. V. 279 27646 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15060064 JRNL DOI 10.1074/JBC.M401692200 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 158.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 24226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1288 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1722 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4041 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.33000 REMARK 3 B22 (A**2) : -2.33000 REMARK 3 B33 (A**2) : 3.49000 REMARK 3 B12 (A**2) : -1.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.452 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.320 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.240 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.057 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4263 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5794 ; 1.298 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 6.578 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3314 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2281 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 296 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.130 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2563 ; 0.557 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4160 ; 1.052 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1700 ; 1.350 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1634 ; 2.345 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000021528. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00067 REMARK 200 MONOCHROMATOR : A DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 IN NON-DISPERSIVE CONFIGURATION REMARK 200 WITH TWO INTERCHANGEABLE PAIRS REMARK 200 OF CRYSTALS - SI(111) AND SI(220) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26170 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 158.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67900 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, SODIUM CHLORIDE, REMARK 280 TRIS, GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 156.69750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 156.69750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 156.69750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 156.69750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 156.69750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 156.69750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CZ NH1 NH2 REMARK 470 LYS A 89 CB CG CD CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS B 66 CB CG CD CE NZ REMARK 470 LYS B 173 CB CG CD CE NZ REMARK 470 ARG B 205 CZ NH1 NH2 REMARK 470 LYS B 237 CD CE REMARK 470 GLN B 255 CB CG CD OE1 NE2 REMARK 470 HIS B 256 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE B 78 NH2 ARG B 148 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 202 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 216 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 220 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 239 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 102 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 68 36.94 -94.35 REMARK 500 LYS A 89 -92.50 -40.47 REMARK 500 THR A 113 -3.44 -59.02 REMARK 500 PHE A 136 -10.45 82.25 REMARK 500 GLU A 160 125.32 -170.44 REMARK 500 PRO A 172 110.59 -35.93 REMARK 500 SER A 183 -76.56 -80.63 REMARK 500 ARG A 187 -158.97 -111.10 REMARK 500 SER A 221 31.66 -144.79 REMARK 500 SER A 225 33.53 70.80 REMARK 500 ASP A 239 133.28 -30.36 REMARK 500 ASP A 241 90.65 10.69 REMARK 500 ASN B 3 -75.34 -12.31 REMARK 500 TYR B 64 -57.47 -131.39 REMARK 500 TRP B 69 164.32 -46.55 REMARK 500 THR B 87 24.33 -140.69 REMARK 500 ALA B 91 86.78 82.00 REMARK 500 GLU B 99 121.03 -38.76 REMARK 500 PHE B 136 -16.73 81.89 REMARK 500 SER B 163 -162.48 -162.54 REMARK 500 ARG B 187 -136.65 -119.81 REMARK 500 THR B 209 -169.52 -161.50 REMARK 500 SER B 221 34.44 -142.94 REMARK 500 ASP B 241 133.51 -18.75 REMARK 500 HIS B 256 136.63 92.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 HGP A 304 REMARK 610 HGP B 303 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 134 OH REMARK 620 2 TYR A 169 OH 92.2 REMARK 620 3 HIS A 194 NE2 88.9 93.1 REMARK 620 4 HIS A 196 NE2 84.8 170.3 96.0 REMARK 620 5 BEZ A 306 O1 115.2 69.7 150.1 103.2 REMARK 620 6 BEZ A 306 O2 175.3 85.2 95.2 97.1 60.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 134 OH REMARK 620 2 TYR B 169 OH 92.7 REMARK 620 3 HIS B 194 NE2 99.6 88.9 REMARK 620 4 HIS B 196 NE2 87.4 177.1 94.0 REMARK 620 5 BEZ B 307 O1 114.0 82.2 145.6 95.1 REMARK 620 6 BEZ B 307 O2 169.1 85.0 91.1 94.3 55.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HGP B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HGP A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAM A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ B 307 DBREF 1S9A A 1 257 UNP O67987 CLCA_RHOOP 1 257 DBREF 1S9A B 1 257 UNP O67987 CLCA_RHOOP 1 257 SEQRES 1 A 257 MET ALA ASN THR ARG VAL ILE GLU LEU PHE ASP GLU PHE SEQRES 2 A 257 THR ASP LEU ILE ARG ASP PHE ILE VAL ARG HIS GLU ILE SEQRES 3 A 257 THR THR PRO GLU TYR GLU THR ILE MET GLN TYR MET ILE SEQRES 4 A 257 SER VAL GLY GLU ALA GLY GLU TRP PRO LEU TRP LEU ASP SEQRES 5 A 257 ALA PHE PHE GLU THR THR VAL ASP SER VAL SER TYR GLY SEQRES 6 A 257 LYS GLY ASN TRP THR SER SER ALA ILE GLN GLY PRO PHE SEQRES 7 A 257 PHE LYS GLU GLY ALA PRO LEU LEU THR GLY LYS PRO ALA SEQRES 8 A 257 THR LEU PRO MET ARG ALA ASP GLU PRO GLY ASP ARG MET SEQRES 9 A 257 ARG PHE THR GLY SER VAL ARG ASP THR SER GLY THR PRO SEQRES 10 A 257 ILE THR GLY ALA VAL ILE ASP VAL TRP HIS SER THR ASN SEQRES 11 A 257 ASP GLY ASN TYR SER PHE PHE SER PRO ALA LEU PRO ASP SEQRES 12 A 257 GLN TYR LEU LEU ARG GLY ARG VAL VAL PRO ALA GLU ASP SEQRES 13 A 257 GLY SER ILE GLU PHE HIS SER ILE ARG PRO VAL PRO TYR SEQRES 14 A 257 GLU ILE PRO LYS ALA GLY PRO THR GLY GLN LEU MET ASN SEQRES 15 A 257 SER TYR LEU GLY ARG HIS SER TRP ARG PRO ALA HIS ILE SEQRES 16 A 257 HIS ILE ARG ILE THR ALA ASP GLY TYR ARG PRO LEU ILE SEQRES 17 A 257 THR GLN LEU TYR PHE GLU GLY ASP PRO TYR LEU ASP SER SEQRES 18 A 257 ASP SER CYS SER ALA VAL LYS SER GLU LEU VAL LEU PRO SEQRES 19 A 257 VAL ASN LYS ILE ASP ILE ASP GLY GLU THR TRP GLN LEU SEQRES 20 A 257 VAL ASP PHE ASN PHE ILE LEU GLN HIS ASN SEQRES 1 B 257 MET ALA ASN THR ARG VAL ILE GLU LEU PHE ASP GLU PHE SEQRES 2 B 257 THR ASP LEU ILE ARG ASP PHE ILE VAL ARG HIS GLU ILE SEQRES 3 B 257 THR THR PRO GLU TYR GLU THR ILE MET GLN TYR MET ILE SEQRES 4 B 257 SER VAL GLY GLU ALA GLY GLU TRP PRO LEU TRP LEU ASP SEQRES 5 B 257 ALA PHE PHE GLU THR THR VAL ASP SER VAL SER TYR GLY SEQRES 6 B 257 LYS GLY ASN TRP THR SER SER ALA ILE GLN GLY PRO PHE SEQRES 7 B 257 PHE LYS GLU GLY ALA PRO LEU LEU THR GLY LYS PRO ALA SEQRES 8 B 257 THR LEU PRO MET ARG ALA ASP GLU PRO GLY ASP ARG MET SEQRES 9 B 257 ARG PHE THR GLY SER VAL ARG ASP THR SER GLY THR PRO SEQRES 10 B 257 ILE THR GLY ALA VAL ILE ASP VAL TRP HIS SER THR ASN SEQRES 11 B 257 ASP GLY ASN TYR SER PHE PHE SER PRO ALA LEU PRO ASP SEQRES 12 B 257 GLN TYR LEU LEU ARG GLY ARG VAL VAL PRO ALA GLU ASP SEQRES 13 B 257 GLY SER ILE GLU PHE HIS SER ILE ARG PRO VAL PRO TYR SEQRES 14 B 257 GLU ILE PRO LYS ALA GLY PRO THR GLY GLN LEU MET ASN SEQRES 15 B 257 SER TYR LEU GLY ARG HIS SER TRP ARG PRO ALA HIS ILE SEQRES 16 B 257 HIS ILE ARG ILE THR ALA ASP GLY TYR ARG PRO LEU ILE SEQRES 17 B 257 THR GLN LEU TYR PHE GLU GLY ASP PRO TYR LEU ASP SER SEQRES 18 B 257 ASP SER CYS SER ALA VAL LYS SER GLU LEU VAL LEU PRO SEQRES 19 B 257 VAL ASN LYS ILE ASP ILE ASP GLY GLU THR TRP GLN LEU SEQRES 20 B 257 VAL ASP PHE ASN PHE ILE LEU GLN HIS ASN HET FE A 300 1 HET HGP A 304 37 HET TAM A 305 11 HET BEZ A 306 9 HET FE B 301 1 HET HGP B 303 38 HET BEZ B 307 9 HETNAM FE FE (III) ION HETNAM HGP (1-HEXADECANOYL-2-TETRADECANOYL-GLYCEROL-3-YL) HETNAM 2 HGP PHOSPHONYL CHOLINE HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE HETNAM BEZ BENZOIC ACID FORMUL 3 FE 2(FE 3+) FORMUL 4 HGP 2(C38 H77 N O8 P 1+) FORMUL 5 TAM C7 H17 N O3 FORMUL 6 BEZ 2(C7 H6 O2) FORMUL 10 HOH *284(H2 O) HELIX 1 1 ASN A 3 GLU A 25 1 23 HELIX 2 2 THR A 27 ALA A 44 1 18 HELIX 3 3 GLU A 46 PHE A 55 1 10 HELIX 4 4 PHE A 55 TYR A 64 1 10 HELIX 5 5 GLY A 175 SER A 183 1 9 HELIX 6 6 LYS A 228 GLU A 230 5 3 HELIX 7 7 ALA B 2 HIS B 24 1 23 HELIX 8 8 THR B 27 ALA B 44 1 18 HELIX 9 9 GLU B 46 PHE B 55 1 10 HELIX 10 10 PHE B 55 TYR B 64 1 10 HELIX 11 11 GLY B 175 SER B 183 1 9 HELIX 12 12 LYS B 228 GLU B 230 5 3 SHEET 1 A 6 LEU A 85 LEU A 86 0 SHEET 2 A 6 ARG A 148 VAL A 151 1 O ARG A 150 N LEU A 86 SHEET 3 A 6 VAL A 122 TRP A 126 -1 N ILE A 123 O VAL A 151 SHEET 4 A 6 HIS A 194 ALA A 201 -1 O ARG A 198 N ASP A 124 SHEET 5 A 6 TYR A 204 PHE A 213 -1 O THR A 209 N ILE A 197 SHEET 6 A 6 VAL A 232 LEU A 233 1 O LEU A 233 N TYR A 212 SHEET 1 B 4 SER A 158 ILE A 164 0 SHEET 2 B 4 ARG A 103 ASP A 112 -1 N MET A 104 O SER A 163 SHEET 3 B 4 GLN A 246 LEU A 254 1 O PHE A 252 N SER A 109 SHEET 4 B 4 ASN A 236 LYS A 237 -1 N ASN A 236 O LEU A 247 SHEET 1 C 2 TYR A 169 GLU A 170 0 SHEET 2 C 2 TRP A 190 ARG A 191 -1 O ARG A 191 N TYR A 169 SHEET 1 D 4 SER B 158 ILE B 164 0 SHEET 2 D 4 ARG B 103 ASP B 112 -1 N PHE B 106 O PHE B 161 SHEET 3 D 4 GLN B 246 LEU B 254 1 O PHE B 252 N SER B 109 SHEET 4 D 4 ASN B 236 LYS B 237 -1 N ASN B 236 O LEU B 247 SHEET 1 E 5 ARG B 148 VAL B 151 0 SHEET 2 E 5 VAL B 122 TRP B 126 -1 N ILE B 123 O VAL B 151 SHEET 3 E 5 HIS B 194 THR B 200 -1 O HIS B 196 N TRP B 126 SHEET 4 E 5 LEU B 207 PHE B 213 -1 O LEU B 207 N ILE B 199 SHEET 5 E 5 VAL B 232 LEU B 233 1 O LEU B 233 N TYR B 212 SHEET 1 F 2 TYR B 169 GLU B 170 0 SHEET 2 F 2 TRP B 190 ARG B 191 -1 O ARG B 191 N TYR B 169 LINK OH TYR A 134 FE FE A 300 1555 1555 2.19 LINK OH TYR A 169 FE FE A 300 1555 1555 2.23 LINK NE2 HIS A 194 FE FE A 300 1555 1555 2.03 LINK NE2 HIS A 196 FE FE A 300 1555 1555 2.21 LINK FE FE A 300 O1 BEZ A 306 1555 1555 2.12 LINK FE FE A 300 O2 BEZ A 306 1555 1555 2.49 LINK OH TYR B 134 FE FE B 301 1555 1555 1.79 LINK OH TYR B 169 FE FE B 301 1555 1555 1.90 LINK NE2 HIS B 194 FE FE B 301 1555 1555 2.02 LINK NE2 HIS B 196 FE FE B 301 1555 1555 2.08 LINK FE FE B 301 O1 BEZ B 307 1555 1555 2.51 LINK FE FE B 301 O2 BEZ B 307 1555 1555 2.54 SITE 1 AC1 5 TYR A 134 TYR A 169 HIS A 194 HIS A 196 SITE 2 AC1 5 BEZ A 306 SITE 1 AC2 5 TYR B 134 TYR B 169 HIS B 194 HIS B 196 SITE 2 AC2 5 BEZ B 307 SITE 1 AC3 9 THR A 33 TYR A 37 TRP A 50 TYR A 184 SITE 2 AC3 9 HGP A 304 ALA B 2 VAL B 6 LEU B 9 SITE 3 AC3 9 PHE B 13 SITE 1 AC4 9 ASN A 3 VAL A 6 PHE A 13 PHE B 20 SITE 2 AC4 9 THR B 33 TYR B 37 TRP B 50 TYR B 184 SITE 3 AC4 9 HGP B 303 SITE 1 AC5 10 PRO A 48 ASP A 52 GLU A 56 GLN A 75 SITE 2 AC5 10 GLY A 76 PRO A 77 HOH A 451 THR B 28 SITE 3 AC5 10 GLU B 32 MET B 35 SITE 1 AC6 14 LEU A 49 ASP A 52 ALA A 53 ILE A 74 SITE 2 AC6 14 GLY A 76 PRO A 77 PHE A 78 TYR A 134 SITE 3 AC6 14 TYR A 169 ARG A 191 HIS A 194 HIS A 196 SITE 4 AC6 14 CYS A 224 FE A 300 SITE 1 AC7 12 LEU B 49 ILE B 74 GLY B 76 PRO B 77 SITE 2 AC7 12 PHE B 78 TYR B 134 TYR B 169 ARG B 191 SITE 3 AC7 12 HIS B 194 HIS B 196 CYS B 224 FE B 301 CRYST1 89.328 89.328 313.395 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011195 0.006463 0.000000 0.00000 SCALE2 0.000000 0.012927 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003191 0.00000