HEADER ANTI-ONCOGENE 12-MAR-95 1SAH OBSLTE 21-DEC-11 1SAH 1SAF TITLE HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION DOMAIN TITLE 2 OF P53 BY MULTI-DIMENSIONAL NMR (SAD STRUCTURES) SPLIT 1SAF 1SAH 1SAJ COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR SUPPRESSOR P53; COMPND 3 CHAIN: A, B, C, D; COMPND 4 OTHER_DETAILS: SAD STRUCTURES 27 - 52 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS ANTI-ONCOGENE EXPDTA SOLUTION NMR NUMMDL 26 AUTHOR G.M.CLORE,J.G.OMICHINSKI,A.M.GRONENBORN REVDAT 4 21-DEC-11 1SAH 1 OBSLTE VERSN REVDAT 3 24-FEB-09 1SAH 1 VERSN REVDAT 2 01-APR-03 1SAH 1 JRNL REVDAT 1 15-OCT-95 1SAH 0 JRNL AUTH G.M.CLORE,J.ERNST,R.CLUBB,J.G.OMICHINSKI,W.M.KENNEDY, JRNL AUTH 2 K.SAKAGUCHI,E.APPELLA,A.M.GRONENBORN JRNL TITL REFINED SOLUTION STRUCTURE OF THE OLIGOMERIZATION DOMAIN OF JRNL TITL 2 THE TUMOUR SUPPRESSOR P53. JRNL REF NAT.STRUCT.BIOL. V. 2 321 1995 JRNL REFN ISSN 1072-8368 JRNL PMID 7796267 JRNL DOI 10.1038/NSB0495-321 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.M.CLORE,J.G.OMICHINSKI,K.SAKAGUCHI,N.ZAMBRANO,H.SAKAMOTO, REMARK 1 AUTH 2 E.APPELLA,A.M.GRONENBORN REMARK 1 TITL INTERHELICAL ANGLES IN THE SOLUTION STRUCTURE OF THE REMARK 1 TITL 2 OLIGOMERIZATION DOMAIN OF P53: CORRECTION REMARK 1 REF SCIENCE V. 267 1515 1995 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.M.CLORE,J.G.OMICHINSKI,K.SAKAGUCHI,N.ZAMBRANO,H.SAKAMOTO, REMARK 1 AUTH 2 E.APPELLA,A.M.GRONENBORN REMARK 1 TITL HIGH-RESOLUTION STRUCTURE OF THE OLIGOMERIZATION DOMAIN OF REMARK 1 TITL 2 P53 BY MULTIDIMENSIONAL NMR REMARK 1 REF SCIENCE V. 265 386 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE 3D STRUCTURE OF THE OLIGOMERIZATION DOMAIN (RESIDUES REMARK 3 319 - 360) OF P53 BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED REMARK 3 AND -FILTERED NMR IS BASED ON 4472 EXPERIMENTAL RESTRAINTS REMARK 3 COMPRISING THE FOLLOWING INTRA- AND INTER-SUBUNIT REMARK 3 RESTRAINTS: REMARK 3 REMARK 3 (A) INTRASUBUNIT: 852 SEQUENTIAL (|I-J|=1), 712 MEDIUM REMARK 3 RANGE (1 < |I-J| >=5) AND 76 LONG RANGE (|I-J| >5) REMARK 3 INTERRESIDUES AND 740 INTRARESIDUE APPROXIMATE INTERPROTON REMARK 3 DISTANCE RESTRAINTS, 136 DISTANCE RESTRAINTS FOR 68 REMARK 3 HYDROGEN BONDS, 284 TORSION ANGLE (144 PHI, 104 CHI1, AND REMARK 3 36 CHI2) RESTRAINTS, AND 144 THREE-BOND HN-HA COUPLING REMARK 3 CONSTANT RESTRAINTS. REMARK 3 REMARK 3 (B) INTERSUBUNIT: 244 A-B/C-D, 876 A-C/B-D, 40 A-D/B-C REMARK 3 APPROXIMATE INTERPROTON DISTANCE RESTRAINTS, 40 DISTANCE REMARK 3 RESTRAINTS FOR 20 HYDROGEN BONDS INVOLVING THE A-C/B-D REMARK 3 SUBUNITS, AND 36 DISTANCE RESTRAINTS FOR 4 WATER MOLECULES. REMARK 3 IN ADDITION, THERE ARE A TOTAL OF 38 CALPHA AND 35 CB REMARK 3 CHEMICAL SHIFT RESTRAINTS PER SUBUNIT THAT HAVE BEEN REMARK 3 INCORPORATED INTO THE REFINEMENT [J. KUSZWESKI, J. QIN, REMARK 3 A.M. GRONENBORN AND G.M. CLORE, J. MAGN RESON. SER B 106, REMARK 3 92-96 (1995)]. REMARK 3 REMARK 3 THE 76 STRUCTURES PRESENTED IN PDB ENTRIES 1SAF, 1SAH, AND REMARK 3 1SAJ ARE CALCULATED WITH THE FOLLOWING VALUES FOR THE HARD REMARK 3 SPHERE EFFECTIVE VAN DER WAALS RADII USED IN QUARTIC VAN REMARK 3 DER WAALS REPULSION TERM. IN THE SOURCE REFERENCE, THESE REMARK 3 STRUCTURES ARE REFERRED TO AS . H(POLAR) = 0.95 REMARK 3 ANGSTROMS, H (NON-POLAR) = 1.00 ANGSTROMS, N = 1.30 REMARK 3 ANGSTROMS, C = 1.40 ANGSTROMS, C(AROMATIC) = 1.35 REMARK 3 ANGSTROMS, O = 1.20 ANGSTROMS, AND S = 1.60 ANGSTROMS. REMARK 3 THESE VALUES CORRESPOND TO THE HARD SPHERE EFFECTIVE VAN REMARK 3 DER WAALS RADII EMPLOYED BY THE PROGRAMS DISMAN AND DIANA. REMARK 3 REMARK 3 THE STRUCTURES ARE CALCULATED USING THE HYBRID METRIC REMARK 3 MATRIX DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING REMARK 3 METHOD DESCRIBED BY: NILGES, M., CLORE, G.M. & REMARK 3 GRONENBORN, A.M. (1988) FEBS LETT. 229, 317-324. ALL REMARK 3 STRUCTURAL STATISTICS ARE GIVEN IN THE SOURCE REFERENCE. REMARK 3 REMARK 3 ENTRY 1SAL CONTAINS THE RESTRAINED MINIMIZED AVERAGE REMARK 3 STRUCTURE: (SA)R. THIS IS OBTAINED BY FIRST AVERAGING THE REMARK 3 COORDINATES OF THE INDIVIDUAL 76 DYNAMICAL SIMULATED REMARK 3 ANNEALING SA STRUCTURES BEST FITTED TO RESIDUES 326 - 354 REMARK 3 OF ALL FOUR SUBUNITS, AND SUBJECTING THE RESULTING REMARK 3 COORDINATES TO RESTRAINED MINIMIZATION. THE QUANTITY REMARK 3 PRESENTED IN COLUMNS 61 - 66 IN THIS SET OF COORDINATES REMARK 3 (THE B-FACTOR COLUMN IN X-RAY STRUCTURES) GIVES THE REMARK 3 AVERAGE RMS DIFFERENCE BETWEEN THE INDIVIDUAL SA STRUCTURES REMARK 3 AND THE MEAN STRUCTURE. THE NUMBERS IN COLUMNS 61 - 66 OF REMARK 3 THE INDIVIDUAL STRUCTURES HAVE NO MEANING. NOTE THAT REMARK 3 RESIDUES 319 - 323 AT THE N-TERMINUS AND RESIDUES 357 - 360 REMARK 3 AT THE C-TERMINUS ARE COMPLETELY DISORDERED. REMARK 4 REMARK 4 1SAH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 26 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 27 LYS A 320 -89.14 58.75 REMARK 500 27 LYS A 321 64.16 64.58 REMARK 500 27 LYS B 320 -89.05 58.64 REMARK 500 27 LYS B 321 64.22 64.45 REMARK 500 27 LYS C 320 -89.06 58.66 REMARK 500 27 LYS C 321 64.22 64.51 REMARK 500 27 LYS D 320 -88.92 58.66 REMARK 500 27 LYS D 321 64.16 64.42 REMARK 500 28 LYS A 320 91.46 57.18 REMARK 500 28 LYS A 321 85.05 55.95 REMARK 500 28 GLU A 358 109.44 -49.37 REMARK 500 28 LYS B 320 91.52 57.05 REMARK 500 28 LYS B 321 85.04 55.80 REMARK 500 28 GLU B 358 109.47 -49.44 REMARK 500 28 LYS C 320 91.51 57.10 REMARK 500 28 LYS C 321 85.17 55.73 REMARK 500 28 GLU C 358 109.42 -49.43 REMARK 500 28 LYS D 320 91.43 57.26 REMARK 500 28 LYS D 321 84.97 55.92 REMARK 500 28 GLU D 358 109.40 -49.41 REMARK 500 29 LYS A 320 -150.77 60.57 REMARK 500 29 LEU A 323 49.04 -83.79 REMARK 500 29 ASP A 324 -90.40 -80.15 REMARK 500 29 LYS B 320 -150.76 60.56 REMARK 500 29 LEU B 323 48.98 -83.76 REMARK 500 29 ASP B 324 -90.29 -80.07 REMARK 500 29 LYS C 320 -150.80 60.64 REMARK 500 29 LEU C 323 49.08 -83.69 REMARK 500 29 ASP C 324 -90.28 -80.27 REMARK 500 29 LYS D 320 -150.86 60.54 REMARK 500 29 LEU D 323 49.01 -83.82 REMARK 500 29 ASP D 324 -90.29 -80.17 REMARK 500 30 LYS A 320 116.39 62.65 REMARK 500 30 LYS A 321 71.70 59.80 REMARK 500 30 PRO A 322 -81.82 -61.55 REMARK 500 30 ASP A 324 -134.65 -81.20 REMARK 500 30 LYS B 320 116.30 62.74 REMARK 500 30 LYS B 321 71.55 59.87 REMARK 500 30 PRO B 322 -81.89 -61.45 REMARK 500 30 ASP B 324 -135.76 -81.43 REMARK 500 30 LYS C 320 116.28 62.72 REMARK 500 30 LYS C 321 71.68 59.85 REMARK 500 30 PRO C 322 -81.88 -61.51 REMARK 500 30 ASP C 324 -134.93 -81.23 REMARK 500 30 LYS D 320 116.47 62.57 REMARK 500 30 LYS D 321 71.71 59.81 REMARK 500 30 PRO D 322 -81.84 -61.62 REMARK 500 30 ASP D 324 -134.87 -81.27 REMARK 500 31 LYS A 321 138.32 61.80 REMARK 500 31 ASP A 324 -157.99 -81.19 REMARK 500 REMARK 500 THIS ENTRY HAS 384 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SAF RELATED DB: PDB REMARK 900 RELATED ID: 1SAJ RELATED DB: PDB REMARK 900 RELATED ID: 1SAL RELATED DB: PDB DBREF 1SAH A 319 360 UNP P04637 P53_HUMAN 319 360 DBREF 1SAH B 319 360 UNP P04637 P53_HUMAN 319 360 DBREF 1SAH C 319 360 UNP P04637 P53_HUMAN 319 360 DBREF 1SAH D 319 360 UNP P04637 P53_HUMAN 319 360 SEQRES 1 A 42 LYS LYS LYS PRO LEU ASP GLY GLU TYR PHE THR LEU GLN SEQRES 2 A 42 ILE ARG GLY ARG GLU ARG PHE GLU MET PHE ARG GLU LEU SEQRES 3 A 42 ASN GLU ALA LEU GLU LEU LYS ASP ALA GLN ALA GLY LYS SEQRES 4 A 42 GLU PRO GLY SEQRES 1 B 42 LYS LYS LYS PRO LEU ASP GLY GLU TYR PHE THR LEU GLN SEQRES 2 B 42 ILE ARG GLY ARG GLU ARG PHE GLU MET PHE ARG GLU LEU SEQRES 3 B 42 ASN GLU ALA LEU GLU LEU LYS ASP ALA GLN ALA GLY LYS SEQRES 4 B 42 GLU PRO GLY SEQRES 1 C 42 LYS LYS LYS PRO LEU ASP GLY GLU TYR PHE THR LEU GLN SEQRES 2 C 42 ILE ARG GLY ARG GLU ARG PHE GLU MET PHE ARG GLU LEU SEQRES 3 C 42 ASN GLU ALA LEU GLU LEU LYS ASP ALA GLN ALA GLY LYS SEQRES 4 C 42 GLU PRO GLY SEQRES 1 D 42 LYS LYS LYS PRO LEU ASP GLY GLU TYR PHE THR LEU GLN SEQRES 2 D 42 ILE ARG GLY ARG GLU ARG PHE GLU MET PHE ARG GLU LEU SEQRES 3 D 42 ASN GLU ALA LEU GLU LEU LYS ASP ALA GLN ALA GLY LYS SEQRES 4 D 42 GLU PRO GLY FORMUL 5 HOH *4(H2 O) HELIX 1 1 ARG A 335 ALA A 355 1 21 HELIX 2 2 ARG B 335 ALA B 355 1 21 HELIX 3 3 ARG C 335 ALA C 355 1 21 HELIX 4 4 ARG D 335 ALA D 355 1 21 SHEET 1 A 2 TYR A 327 ARG A 333 0 SHEET 2 A 2 TYR C 327 ARG C 333 -1 N ILE C 332 O PHE A 328 SHEET 1 B 2 TYR B 327 ARG B 333 0 SHEET 2 B 2 TYR D 327 ARG D 333 -1 N ILE D 332 O PHE B 328 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 27