data_1SBF # _entry.id 1SBF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1SBF pdb_00001sbf 10.2210/pdb1sbf/pdb WWPDB D_1000176300 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1SBF _pdbx_database_status.recvd_initial_deposition_date 1997-10-21 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Olsen, L.R.' 1 'Dessen, A.' 2 'Gupta, D.' 3 'Sabesan, S.' 4 'Brewer, C.F.' 5 'Sacchettini, J.C.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;X-ray crystallographic studies of unique cross-linked lattices between four isomeric biantennary oligosaccharides and soybean agglutinin. ; Biochemistry 36 15073 15080 1997 BICHAW US 0006-2960 0033 ? 9398234 10.1021/bi971828+ 1 'X-Ray Crystal Structure of the Soybean Agglutinin Cross-Linked with a Biantennary Analog of the Blood Group I Carbohydrate Antigen' Biochemistry 34 4933 ? 1995 BICHAW US 0006-2960 0033 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Olsen, L.R.' 1 ? primary 'Dessen, A.' 2 ? primary 'Gupta, D.' 3 ? primary 'Sabesan, S.' 4 ? primary 'Sacchettini, J.C.' 5 ? primary 'Brewer, C.F.' 6 ? 1 'Dessen, A.' 7 ? 1 'Gupta, D.' 8 ? 1 'Sabesan, S.' 9 ? 1 'Brewer, C.F.' 10 ? 1 'Sacchettini, J.C.' 11 ? # _cell.entry_id 1SBF _cell.length_a 122.640 _cell.length_b 122.640 _cell.length_c 90.560 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SBF _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'SOYBEAN AGGLUTININ' 27595.816 1 ? ? ? ? 2 branched man 'beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 383.349 1 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 5 water nat water 18.015 22 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AETVSFSWNKFVPKQPNMILQGDAIVTSSGKLQLNKVDENGTPKPSSLGRALYSTPIHIWDKETGSVASFAASFNFTFYA PDTKRLADGLAFFLAPIDTKPQTHAGYLGLFNENESGDQVVAVEFDTFRNSWDPPNPHIGINVNSIRSIKTTSWDLANNK VAKVLITYDASTSLLVASLVYPSQRTSNILSDVVDLKTSLPEWVRIGFSAATGLDIPGESHDVLSWSFASNLPHASSNID PLDLTSFVLHEAI ; _entity_poly.pdbx_seq_one_letter_code_can ;AETVSFSWNKFVPKQPNMILQGDAIVTSSGKLQLNKVDENGTPKPSSLGRALYSTPIHIWDKETGSVASFAASFNFTFYA PDTKRLADGLAFFLAPIDTKPQTHAGYLGLFNENESGDQVVAVEFDTFRNSWDPPNPHIGINVNSIRSIKTTSWDLANNK VAKVLITYDASTSLLVASLVYPSQRTSNILSDVVDLKTSLPEWVRIGFSAATGLDIPGESHDVLSWSFASNLPHASSNID PLDLTSFVLHEAI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLU n 1 3 THR n 1 4 VAL n 1 5 SER n 1 6 PHE n 1 7 SER n 1 8 TRP n 1 9 ASN n 1 10 LYS n 1 11 PHE n 1 12 VAL n 1 13 PRO n 1 14 LYS n 1 15 GLN n 1 16 PRO n 1 17 ASN n 1 18 MET n 1 19 ILE n 1 20 LEU n 1 21 GLN n 1 22 GLY n 1 23 ASP n 1 24 ALA n 1 25 ILE n 1 26 VAL n 1 27 THR n 1 28 SER n 1 29 SER n 1 30 GLY n 1 31 LYS n 1 32 LEU n 1 33 GLN n 1 34 LEU n 1 35 ASN n 1 36 LYS n 1 37 VAL n 1 38 ASP n 1 39 GLU n 1 40 ASN n 1 41 GLY n 1 42 THR n 1 43 PRO n 1 44 LYS n 1 45 PRO n 1 46 SER n 1 47 SER n 1 48 LEU n 1 49 GLY n 1 50 ARG n 1 51 ALA n 1 52 LEU n 1 53 TYR n 1 54 SER n 1 55 THR n 1 56 PRO n 1 57 ILE n 1 58 HIS n 1 59 ILE n 1 60 TRP n 1 61 ASP n 1 62 LYS n 1 63 GLU n 1 64 THR n 1 65 GLY n 1 66 SER n 1 67 VAL n 1 68 ALA n 1 69 SER n 1 70 PHE n 1 71 ALA n 1 72 ALA n 1 73 SER n 1 74 PHE n 1 75 ASN n 1 76 PHE n 1 77 THR n 1 78 PHE n 1 79 TYR n 1 80 ALA n 1 81 PRO n 1 82 ASP n 1 83 THR n 1 84 LYS n 1 85 ARG n 1 86 LEU n 1 87 ALA n 1 88 ASP n 1 89 GLY n 1 90 LEU n 1 91 ALA n 1 92 PHE n 1 93 PHE n 1 94 LEU n 1 95 ALA n 1 96 PRO n 1 97 ILE n 1 98 ASP n 1 99 THR n 1 100 LYS n 1 101 PRO n 1 102 GLN n 1 103 THR n 1 104 HIS n 1 105 ALA n 1 106 GLY n 1 107 TYR n 1 108 LEU n 1 109 GLY n 1 110 LEU n 1 111 PHE n 1 112 ASN n 1 113 GLU n 1 114 ASN n 1 115 GLU n 1 116 SER n 1 117 GLY n 1 118 ASP n 1 119 GLN n 1 120 VAL n 1 121 VAL n 1 122 ALA n 1 123 VAL n 1 124 GLU n 1 125 PHE n 1 126 ASP n 1 127 THR n 1 128 PHE n 1 129 ARG n 1 130 ASN n 1 131 SER n 1 132 TRP n 1 133 ASP n 1 134 PRO n 1 135 PRO n 1 136 ASN n 1 137 PRO n 1 138 HIS n 1 139 ILE n 1 140 GLY n 1 141 ILE n 1 142 ASN n 1 143 VAL n 1 144 ASN n 1 145 SER n 1 146 ILE n 1 147 ARG n 1 148 SER n 1 149 ILE n 1 150 LYS n 1 151 THR n 1 152 THR n 1 153 SER n 1 154 TRP n 1 155 ASP n 1 156 LEU n 1 157 ALA n 1 158 ASN n 1 159 ASN n 1 160 LYS n 1 161 VAL n 1 162 ALA n 1 163 LYS n 1 164 VAL n 1 165 LEU n 1 166 ILE n 1 167 THR n 1 168 TYR n 1 169 ASP n 1 170 ALA n 1 171 SER n 1 172 THR n 1 173 SER n 1 174 LEU n 1 175 LEU n 1 176 VAL n 1 177 ALA n 1 178 SER n 1 179 LEU n 1 180 VAL n 1 181 TYR n 1 182 PRO n 1 183 SER n 1 184 GLN n 1 185 ARG n 1 186 THR n 1 187 SER n 1 188 ASN n 1 189 ILE n 1 190 LEU n 1 191 SER n 1 192 ASP n 1 193 VAL n 1 194 VAL n 1 195 ASP n 1 196 LEU n 1 197 LYS n 1 198 THR n 1 199 SER n 1 200 LEU n 1 201 PRO n 1 202 GLU n 1 203 TRP n 1 204 VAL n 1 205 ARG n 1 206 ILE n 1 207 GLY n 1 208 PHE n 1 209 SER n 1 210 ALA n 1 211 ALA n 1 212 THR n 1 213 GLY n 1 214 LEU n 1 215 ASP n 1 216 ILE n 1 217 PRO n 1 218 GLY n 1 219 GLU n 1 220 SER n 1 221 HIS n 1 222 ASP n 1 223 VAL n 1 224 LEU n 1 225 SER n 1 226 TRP n 1 227 SER n 1 228 PHE n 1 229 ALA n 1 230 SER n 1 231 ASN n 1 232 LEU n 1 233 PRO n 1 234 HIS n 1 235 ALA n 1 236 SER n 1 237 SER n 1 238 ASN n 1 239 ILE n 1 240 ASP n 1 241 PRO n 1 242 LEU n 1 243 ASP n 1 244 LEU n 1 245 THR n 1 246 SER n 1 247 PHE n 1 248 VAL n 1 249 LEU n 1 250 HIS n 1 251 GLU n 1 252 ALA n 1 253 ILE n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name soybean _entity_src_nat.pdbx_organism_scientific 'Glycine max' _entity_src_nat.pdbx_ncbi_taxonomy_id 3847 _entity_src_nat.genus Glycine _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LEC_SOYBN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P05046 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MATSKLKTQNVVVSLSLTLTLVLVLLTSKANSAETVSFSWNKFVPKQPNMILQGDAIVTSSGKLQLNKVDENGTPKPSSL GRALYSTPIHIWDKETGSVASFAASFNFTFYAPDTKRLADGLAFFLAPIDTKPQTHAGYLGLFNENESGDQVVAVEFDTF RNSWDPPNPHIGINVNSIRSIKTTSWDLANNKVAKVLITYDASTSLLVASLVYPSQRTSNILSDVVDLKTSLPEWVRIGF SAATGLDIPGESHDVLSWSFASNLPHASSNIDPLDLTSFVLHEAI ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1SBF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 253 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P05046 _struct_ref_seq.db_align_beg 33 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 285 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 253 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1SBF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_percent_sol 56.7 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;PROTEIN WAS CRYSTALLIZED USING 3 MICROLITERS OF LECTIN SOLUTION (34 MG/ML) AND 755 MICROMOLAR SUGAR IN 0.1 M HEPES, PH 7.2, 1MM CACL2, 1MM MNCL2, AND 0.15 M NACL, WHICH WERE MIXED WITH 3 MICROLITER OF PRECIPITANT SOLUTION (SAME BUFFER, EXCEPT THAT THE SALT CONCENTRATION WAS 0.5M ; # _diffrn.id 1 _diffrn.ambient_temp 287 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date 1995-10 _diffrn_detector.details COLLIMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1SBF _reflns.observed_criterion_sigma_I 2. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25. _reflns.d_resolution_high 2.42 _reflns.number_obs 12224 _reflns.number_all ? _reflns.percent_possible_obs 91. _reflns.pdbx_Rmerge_I_obs 0.0128000 _reflns.pdbx_Rsym_value 0.0128000 _reflns.pdbx_netI_over_sigmaI 13.9 _reflns.B_iso_Wilson_estimate 26.2 _reflns.pdbx_redundancy 4.74 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.42 _reflns_shell.d_res_low 2.77 _reflns_shell.percent_possible_all 85. _reflns_shell.Rmerge_I_obs 0.0299900 _reflns_shell.pdbx_Rsym_value 0.0299900 _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_redundancy 3.92 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1SBF _refine.ls_number_reflns_obs 11777 _refine.ls_number_reflns_all 11777 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 99. _refine.ls_d_res_high 2.43 _refine.ls_percent_reflns_obs 88. _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1870000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'TNT DEFAULT' _refine.solvent_model_param_ksol 0.75 _refine.solvent_model_param_bsol 122. _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1SBA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'TNT BCORREL' _refine.pdbx_stereochemistry_target_values 'TNT PROTGEO' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1707 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 1756 _refine_hist.d_res_high 2.43 _refine_hist.d_res_low 99. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.011 ? 2.2 3538 'X-RAY DIFFRACTION' ? t_angle_deg 1.946 ? 4.2 4848 'X-RAY DIFFRACTION' ? t_dihedral_angle_d 18.686 ? 0 1980 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct 0 ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes 0.017 ? 2 77 'X-RAY DIFFRACTION' ? t_gen_planes 0.024 ? 5 528 'X-RAY DIFFRACTION' ? t_it ? ? ? ? 'X-RAY DIFFRACTION' ? t_nbd 0.062 ? 10 29 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1SBF _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1870000 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1SBF _struct.title 'SOYBEAN AGGLUTININ' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1SBF _struct_keywords.pdbx_keywords LECTIN _struct_keywords.text 'LECTIN, AGGLUTININ' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 105 ? TYR A 107 ? ALA A 105 TYR A 107 5 ? 3 HELX_P HELX_P2 2 LEU A 196 ? SER A 199 ? LEU A 196 SER A 199 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B NAG . O4 ? ? ? 1_555 B GAL . C1 ? ? B NAG 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.641 ? ? metalc1 metalc ? ? A GLU 124 OE2 ? ? ? 1_555 C MN . MN ? ? A GLU 124 A MN 600 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc2 metalc ? ? A ASP 126 OD2 ? ? ? 1_555 C MN . MN ? ? A ASP 126 A MN 600 1_555 ? ? ? ? ? ? ? 2.041 ? ? metalc3 metalc ? ? A ASP 126 OD2 ? ? ? 1_555 D CA . CA ? ? A ASP 126 A CA 601 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc4 metalc ? ? A ASP 126 OD1 ? ? ? 1_555 D CA . CA ? ? A ASP 126 A CA 601 1_555 ? ? ? ? ? ? ? 2.481 ? ? metalc5 metalc ? ? A PHE 128 O ? ? ? 1_555 D CA . CA ? ? A PHE 128 A CA 601 1_555 ? ? ? ? ? ? ? 2.211 ? ? metalc6 metalc ? ? A ASN 130 OD1 ? ? ? 1_555 D CA . CA ? ? A ASN 130 A CA 601 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc7 metalc ? ? A ASP 133 OD1 ? ? ? 1_555 C MN . MN ? ? A ASP 133 A MN 600 1_555 ? ? ? ? ? ? ? 2.124 ? ? metalc8 metalc ? ? A ASP 133 OD2 ? ? ? 1_555 D CA . CA ? ? A ASP 133 A CA 601 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc9 metalc ? ? A HIS 138 NE2 ? ? ? 1_555 C MN . MN ? ? A HIS 138 A MN 600 1_555 ? ? ? ? ? ? ? 2.248 ? ? metalc10 metalc ? ? C MN . MN ? ? ? 1_555 E HOH . O ? ? A MN 600 A HOH 901 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc11 metalc ? ? C MN . MN ? ? ? 1_555 E HOH . O ? ? A MN 600 A HOH 902 1_555 ? ? ? ? ? ? ? 1.994 ? ? metalc12 metalc ? ? D CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 601 A HOH 903 1_555 ? ? ? ? ? ? ? 2.337 ? ? metalc13 metalc ? ? D CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 601 A HOH 927 1_555 ? ? ? ? ? ? ? 2.087 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 87 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 87 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ASP _struct_mon_prot_cis.pdbx_label_seq_id_2 88 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASP _struct_mon_prot_cis.pdbx_auth_seq_id_2 88 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 2 ? TRP A 8 ? GLU A 2 TRP A 8 A 2 SER A 220 ? LEU A 232 ? SER A 220 LEU A 232 A 3 SER A 69 ? TYR A 79 ? SER A 69 TYR A 79 A 4 ALA A 162 ? ASP A 169 ? ALA A 162 ASP A 169 A 5 LEU A 174 ? TYR A 181 ? LEU A 174 TYR A 181 A 6 THR A 186 ? VAL A 193 ? THR A 186 VAL A 193 B 1 MET A 18 ? GLY A 22 ? MET A 18 GLY A 22 B 2 LEU A 48 ? TYR A 53 ? LEU A 48 TYR A 53 B 3 VAL A 204 ? THR A 212 ? VAL A 204 THR A 212 B 4 ASP A 88 ? PRO A 96 ? ASP A 88 PRO A 96 B 5 VAL A 121 ? ASP A 126 ? VAL A 121 ASP A 126 B 6 HIS A 138 ? VAL A 143 ? HIS A 138 VAL A 143 B 7 LYS A 150 ? SER A 153 ? LYS A 150 SER A 153 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 2 ? O GLU A 2 N LEU A 232 ? N LEU A 232 A 2 3 O SER A 220 ? O SER A 220 N TYR A 79 ? N TYR A 79 A 3 4 O PHE A 70 ? O PHE A 70 N TYR A 168 ? N TYR A 168 A 4 5 O LYS A 163 ? O LYS A 163 N VAL A 180 ? N VAL A 180 A 5 6 O LEU A 175 ? O LEU A 175 N ASP A 192 ? N ASP A 192 B 1 2 O ILE A 19 ? O ILE A 19 N LEU A 52 ? N LEU A 52 B 2 3 O GLY A 49 ? O GLY A 49 N ALA A 210 ? N ALA A 210 B 3 4 O ARG A 205 ? O ARG A 205 N ALA A 95 ? N ALA A 95 B 4 5 O LEU A 90 ? O LEU A 90 N PHE A 125 ? N PHE A 125 B 5 6 O ALA A 122 ? O ALA A 122 N ASN A 142 ? N ASN A 142 B 6 7 O ILE A 139 ? O ILE A 139 N THR A 152 ? N THR A 152 # _database_PDB_matrix.entry_id 1SBF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1SBF _atom_sites.fract_transf_matrix[1][1] 0.008154 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008154 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011042 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA MN N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 MET 18 18 18 MET MET A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 TRP 60 60 60 TRP TRP A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 HIS 104 104 104 HIS HIS A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 GLN 119 119 119 GLN GLN A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 PHE 125 125 125 PHE PHE A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 THR 127 127 127 THR THR A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 TRP 132 132 132 TRP TRP A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 PRO 134 134 134 PRO PRO A . n A 1 135 PRO 135 135 135 PRO PRO A . n A 1 136 ASN 136 136 136 ASN ASN A . n A 1 137 PRO 137 137 137 PRO PRO A . n A 1 138 HIS 138 138 138 HIS HIS A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 ASN 144 144 144 ASN ASN A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 THR 151 151 151 THR THR A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 SER 153 153 153 SER SER A . n A 1 154 TRP 154 154 154 TRP TRP A . n A 1 155 ASP 155 155 155 ASP ASP A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 ASN 158 158 158 ASN ASN A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 VAL 161 161 161 VAL VAL A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 TYR 168 168 168 TYR TYR A . n A 1 169 ASP 169 169 169 ASP ASP A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 THR 172 172 172 THR THR A . n A 1 173 SER 173 173 173 SER SER A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 ALA 177 177 177 ALA ALA A . n A 1 178 SER 178 178 178 SER SER A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 TYR 181 181 181 TYR TYR A . n A 1 182 PRO 182 182 182 PRO PRO A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 GLN 184 184 184 GLN GLN A . n A 1 185 ARG 185 185 185 ARG ARG A . n A 1 186 THR 186 186 186 THR THR A . n A 1 187 SER 187 187 187 SER SER A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 LEU 190 190 190 LEU LEU A . n A 1 191 SER 191 191 191 SER SER A . n A 1 192 ASP 192 192 192 ASP ASP A . n A 1 193 VAL 193 193 193 VAL VAL A . n A 1 194 VAL 194 194 194 VAL VAL A . n A 1 195 ASP 195 195 195 ASP ASP A . n A 1 196 LEU 196 196 196 LEU LEU A . n A 1 197 LYS 197 197 197 LYS LYS A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 SER 199 199 199 SER SER A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 PRO 201 201 201 PRO PRO A . n A 1 202 GLU 202 202 202 GLU GLU A . n A 1 203 TRP 203 203 203 TRP TRP A . n A 1 204 VAL 204 204 204 VAL VAL A . n A 1 205 ARG 205 205 205 ARG ARG A . n A 1 206 ILE 206 206 206 ILE ILE A . n A 1 207 GLY 207 207 207 GLY GLY A . n A 1 208 PHE 208 208 208 PHE PHE A . n A 1 209 SER 209 209 209 SER SER A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 THR 212 212 212 THR THR A . n A 1 213 GLY 213 213 213 GLY GLY A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 ASP 215 215 215 ASP ASP A . n A 1 216 ILE 216 216 216 ILE ILE A . n A 1 217 PRO 217 217 217 PRO PRO A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 GLU 219 219 219 GLU GLU A . n A 1 220 SER 220 220 220 SER SER A . n A 1 221 HIS 221 221 221 HIS HIS A . n A 1 222 ASP 222 222 222 ASP ASP A . n A 1 223 VAL 223 223 223 VAL VAL A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 SER 225 225 225 SER SER A . n A 1 226 TRP 226 226 226 TRP TRP A . n A 1 227 SER 227 227 227 SER SER A . n A 1 228 PHE 228 228 228 PHE PHE A . n A 1 229 ALA 229 229 229 ALA ALA A . n A 1 230 SER 230 230 230 SER SER A . n A 1 231 ASN 231 231 231 ASN ASN A . n A 1 232 LEU 232 232 232 LEU LEU A . n A 1 233 PRO 233 233 233 PRO PRO A . n A 1 234 HIS 234 234 234 HIS HIS A . n A 1 235 ALA 235 235 ? ? ? A . n A 1 236 SER 236 236 ? ? ? A . n A 1 237 SER 237 237 ? ? ? A . n A 1 238 ASN 238 238 ? ? ? A . n A 1 239 ILE 239 239 ? ? ? A . n A 1 240 ASP 240 240 ? ? ? A . n A 1 241 PRO 241 241 ? ? ? A . n A 1 242 LEU 242 242 ? ? ? A . n A 1 243 ASP 243 243 ? ? ? A . n A 1 244 LEU 244 244 ? ? ? A . n A 1 245 THR 245 245 ? ? ? A . n A 1 246 SER 246 246 ? ? ? A . n A 1 247 PHE 247 247 ? ? ? A . n A 1 248 VAL 248 248 ? ? ? A . n A 1 249 LEU 249 249 ? ? ? A . n A 1 250 HIS 250 250 ? ? ? A . n A 1 251 GLU 251 251 ? ? ? A . n A 1 252 ALA 252 252 ? ? ? A . n A 1 253 ILE 253 253 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN 1 600 600 MN MN A . D 4 CA 1 601 601 CA CA A . E 5 HOH 1 901 901 HOH HOH A . E 5 HOH 2 902 902 HOH HOH A . E 5 HOH 3 903 903 HOH HOH A . E 5 HOH 4 905 905 HOH HOH A . E 5 HOH 5 906 906 HOH HOH A . E 5 HOH 6 909 909 HOH HOH A . E 5 HOH 7 910 910 HOH HOH A . E 5 HOH 8 911 911 HOH HOH A . E 5 HOH 9 912 912 HOH HOH A . E 5 HOH 10 915 915 HOH HOH A . E 5 HOH 11 917 917 HOH HOH A . E 5 HOH 12 921 921 HOH HOH A . E 5 HOH 13 927 927 HOH HOH A . E 5 HOH 14 938 938 HOH HOH A . E 5 HOH 15 939 939 HOH HOH A . E 5 HOH 16 951 951 HOH HOH A . E 5 HOH 17 956 956 HOH HOH A . E 5 HOH 18 963 963 HOH HOH A . E 5 HOH 19 966 966 HOH HOH A . E 5 HOH 20 967 967 HOH HOH A . E 5 HOH 21 969 969 HOH HOH A . E 5 HOH 22 973 973 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_755 -x+2,-y,z -1.0000000000 0.0000000000 0.0000000000 245.2800000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0.0000000000 -1.0000000000 0.0000000000 122.6400000000 -1.0000000000 0.0000000000 0.0000000000 122.6400000000 0.0000000000 0.0000000000 -1.0000000000 90.5600000000 4 'crystal symmetry operation' 15_646 y+1,x-1,-z+1 0.0000000000 1.0000000000 0.0000000000 122.6400000000 1.0000000000 0.0000000000 0.0000000000 -122.6400000000 0.0000000000 0.0000000000 -1.0000000000 90.5600000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 124 ? A GLU 124 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 OD2 ? A ASP 126 ? A ASP 126 ? 1_555 90.5 ? 2 OE2 ? A GLU 124 ? A GLU 124 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 OD1 ? A ASP 133 ? A ASP 133 ? 1_555 160.7 ? 3 OD2 ? A ASP 126 ? A ASP 126 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 OD1 ? A ASP 133 ? A ASP 133 ? 1_555 100.8 ? 4 OE2 ? A GLU 124 ? A GLU 124 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 NE2 ? A HIS 138 ? A HIS 138 ? 1_555 79.4 ? 5 OD2 ? A ASP 126 ? A ASP 126 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 NE2 ? A HIS 138 ? A HIS 138 ? 1_555 96.0 ? 6 OD1 ? A ASP 133 ? A ASP 133 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 NE2 ? A HIS 138 ? A HIS 138 ? 1_555 83.8 ? 7 OE2 ? A GLU 124 ? A GLU 124 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 O ? E HOH . ? A HOH 901 ? 1_555 96.9 ? 8 OD2 ? A ASP 126 ? A ASP 126 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 O ? E HOH . ? A HOH 901 ? 1_555 86.7 ? 9 OD1 ? A ASP 133 ? A ASP 133 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 O ? E HOH . ? A HOH 901 ? 1_555 99.3 ? 10 NE2 ? A HIS 138 ? A HIS 138 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 O ? E HOH . ? A HOH 901 ? 1_555 175.4 ? 11 OE2 ? A GLU 124 ? A GLU 124 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 O ? E HOH . ? A HOH 902 ? 1_555 87.3 ? 12 OD2 ? A ASP 126 ? A ASP 126 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 O ? E HOH . ? A HOH 902 ? 1_555 174.8 ? 13 OD1 ? A ASP 133 ? A ASP 133 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 O ? E HOH . ? A HOH 902 ? 1_555 82.7 ? 14 NE2 ? A HIS 138 ? A HIS 138 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 O ? E HOH . ? A HOH 902 ? 1_555 88.2 ? 15 O ? E HOH . ? A HOH 901 ? 1_555 MN ? C MN . ? A MN 600 ? 1_555 O ? E HOH . ? A HOH 902 ? 1_555 88.9 ? 16 OD2 ? A ASP 126 ? A ASP 126 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 OD1 ? A ASP 126 ? A ASP 126 ? 1_555 55.3 ? 17 OD2 ? A ASP 126 ? A ASP 126 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? A PHE 128 ? A PHE 128 ? 1_555 119.7 ? 18 OD1 ? A ASP 126 ? A ASP 126 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? A PHE 128 ? A PHE 128 ? 1_555 78.6 ? 19 OD2 ? A ASP 126 ? A ASP 126 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 OD1 ? A ASN 130 ? A ASN 130 ? 1_555 152.1 ? 20 OD1 ? A ASP 126 ? A ASP 126 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 OD1 ? A ASN 130 ? A ASN 130 ? 1_555 152.4 ? 21 O ? A PHE 128 ? A PHE 128 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 OD1 ? A ASN 130 ? A ASN 130 ? 1_555 82.1 ? 22 OD2 ? A ASP 126 ? A ASP 126 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 OD2 ? A ASP 133 ? A ASP 133 ? 1_555 89.6 ? 23 OD1 ? A ASP 126 ? A ASP 126 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 OD2 ? A ASP 133 ? A ASP 133 ? 1_555 124.9 ? 24 O ? A PHE 128 ? A PHE 128 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 OD2 ? A ASP 133 ? A ASP 133 ? 1_555 87.3 ? 25 OD1 ? A ASN 130 ? A ASN 130 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 OD2 ? A ASP 133 ? A ASP 133 ? 1_555 73.3 ? 26 OD2 ? A ASP 126 ? A ASP 126 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? E HOH . ? A HOH 903 ? 1_555 78.1 ? 27 OD1 ? A ASP 126 ? A ASP 126 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? E HOH . ? A HOH 903 ? 1_555 119.2 ? 28 O ? A PHE 128 ? A PHE 128 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? E HOH . ? A HOH 903 ? 1_555 161.2 ? 29 OD1 ? A ASN 130 ? A ASN 130 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? E HOH . ? A HOH 903 ? 1_555 79.0 ? 30 OD2 ? A ASP 133 ? A ASP 133 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? E HOH . ? A HOH 903 ? 1_555 86.6 ? 31 OD2 ? A ASP 126 ? A ASP 126 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? E HOH . ? A HOH 927 ? 1_555 110.9 ? 32 OD1 ? A ASP 126 ? A ASP 126 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? E HOH . ? A HOH 927 ? 1_555 69.2 ? 33 O ? A PHE 128 ? A PHE 128 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? E HOH . ? A HOH 927 ? 1_555 80.8 ? 34 OD1 ? A ASN 130 ? A ASN 130 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? E HOH . ? A HOH 927 ? 1_555 88.4 ? 35 OD2 ? A ASP 133 ? A ASP 133 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? E HOH . ? A HOH 927 ? 1_555 159.3 ? 36 O ? E HOH . ? A HOH 903 ? 1_555 CA ? D CA . ? A CA 601 ? 1_555 O ? E HOH . ? A HOH 927 ? 1_555 99.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-04-22 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-08-09 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Refinement description' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly_gen 13 4 'Structure model' pdbx_struct_conn_angle 14 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 15 4 'Structure model' pdbx_validate_symm_contact 16 4 'Structure model' struct_asym 17 4 'Structure model' struct_conn 18 4 'Structure model' struct_conn_type 19 4 'Structure model' struct_site 20 4 'Structure model' struct_site_gen 21 5 'Structure model' chem_comp 22 5 'Structure model' database_2 23 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_asym_id' 2 4 'Structure model' '_atom_site.auth_seq_id' 3 4 'Structure model' '_atom_site.label_asym_id' 4 4 'Structure model' '_atom_site.label_entity_id' 5 4 'Structure model' '_chem_comp.name' 6 4 'Structure model' '_chem_comp.type' 7 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.value' 22 4 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_asym_id' 23 4 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_seq_id' 24 4 'Structure model' '_pdbx_validate_symm_contact.auth_asym_id_1' 25 4 'Structure model' '_pdbx_validate_symm_contact.auth_asym_id_2' 26 4 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_1' 27 4 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_2' 28 4 'Structure model' '_struct_conn.conn_type_id' 29 4 'Structure model' '_struct_conn.id' 30 4 'Structure model' '_struct_conn.pdbx_dist_value' 31 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 32 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 33 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 34 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 36 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 37 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 38 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 39 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 40 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 41 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 43 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 44 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 45 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 46 4 'Structure model' '_struct_conn_type.id' 47 5 'Structure model' '_chem_comp.pdbx_synonyms' 48 5 'Structure model' '_database_2.pdbx_DOI' 49 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 TNT refinement 5E ? 2 XENGEN 'data reduction' . ? 3 XENGEN 'data scaling' . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 C8 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 NAG _pdbx_validate_symm_contact.auth_seq_id_1 1 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 C8 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 NAG _pdbx_validate_symm_contact.auth_seq_id_2 1 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_555 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 23 ? ? CG A ASP 23 ? ? OD1 A ASP 23 ? ? 124.34 118.30 6.04 0.90 N 2 1 CB A ASP 61 ? ? CG A ASP 61 ? ? OD1 A ASP 61 ? ? 112.35 118.30 -5.95 0.90 N 3 1 CB A ASP 82 ? ? CG A ASP 82 ? ? OD1 A ASP 82 ? ? 123.78 118.30 5.48 0.90 N 4 1 CB A ASP 82 ? ? CG A ASP 82 ? ? OD2 A ASP 82 ? ? 112.18 118.30 -6.12 0.90 N 5 1 CB A ASP 88 ? ? CG A ASP 88 ? ? OD1 A ASP 88 ? ? 112.04 118.30 -6.26 0.90 N 6 1 CB A ASP 98 ? ? CG A ASP 98 ? ? OD1 A ASP 98 ? ? 124.12 118.30 5.82 0.90 N 7 1 CB A ASP 98 ? ? CG A ASP 98 ? ? OD2 A ASP 98 ? ? 112.04 118.30 -6.26 0.90 N 8 1 CB A ASP 126 ? ? CG A ASP 126 ? ? OD2 A ASP 126 ? ? 112.51 118.30 -5.79 0.90 N 9 1 CB A ASP 133 ? ? CG A ASP 133 ? ? OD1 A ASP 133 ? ? 112.74 118.30 -5.56 0.90 N 10 1 CB A ASP 155 ? ? CG A ASP 155 ? ? OD1 A ASP 155 ? ? 111.09 118.30 -7.21 0.90 N 11 1 CB A ASP 155 ? ? CG A ASP 155 ? ? OD2 A ASP 155 ? ? 124.33 118.30 6.03 0.90 N 12 1 CB A ASP 169 ? ? CG A ASP 169 ? ? OD1 A ASP 169 ? ? 123.92 118.30 5.62 0.90 N 13 1 CB A ASP 169 ? ? CG A ASP 169 ? ? OD2 A ASP 169 ? ? 111.86 118.30 -6.44 0.90 N 14 1 CB A ASP 195 ? ? CG A ASP 195 ? ? OD1 A ASP 195 ? ? 124.12 118.30 5.82 0.90 N 15 1 CB A ASP 195 ? ? CG A ASP 195 ? ? OD2 A ASP 195 ? ? 112.18 118.30 -6.12 0.90 N 16 1 CB A ASP 222 ? ? CG A ASP 222 ? ? OD2 A ASP 222 ? ? 112.30 118.30 -6.00 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 38 ? ? -54.96 176.01 2 1 ASN A 40 ? ? -68.48 3.73 3 1 SER A 46 ? ? 70.82 31.00 4 1 ALA A 87 ? ? -179.17 143.05 5 1 GLN A 102 ? ? -102.99 -146.08 6 1 ALA A 105 ? ? 46.76 -132.79 7 1 ASP A 118 ? ? -56.02 -165.92 8 1 ASN A 136 ? ? 80.64 158.10 9 1 ASN A 159 ? ? 59.32 -5.13 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 7 ? OG ? A SER 7 OG 2 1 Y 1 A ASN 9 ? CG ? A ASN 9 CG 3 1 Y 1 A ASN 9 ? OD1 ? A ASN 9 OD1 4 1 Y 1 A ASN 9 ? ND2 ? A ASN 9 ND2 5 1 Y 1 A LYS 10 ? CG ? A LYS 10 CG 6 1 Y 1 A LYS 10 ? CD ? A LYS 10 CD 7 1 Y 1 A LYS 10 ? CE ? A LYS 10 CE 8 1 Y 1 A LYS 10 ? NZ ? A LYS 10 NZ 9 1 Y 1 A VAL 12 ? CG1 ? A VAL 12 CG1 10 1 Y 1 A VAL 12 ? CG2 ? A VAL 12 CG2 11 1 Y 1 A LYS 14 ? CG ? A LYS 14 CG 12 1 Y 1 A LYS 14 ? CD ? A LYS 14 CD 13 1 Y 1 A LYS 14 ? CE ? A LYS 14 CE 14 1 Y 1 A LYS 14 ? NZ ? A LYS 14 NZ 15 1 Y 1 A MET 18 ? CG ? A MET 18 CG 16 1 Y 1 A MET 18 ? SD ? A MET 18 SD 17 1 Y 1 A MET 18 ? CE ? A MET 18 CE 18 1 Y 1 A LYS 31 ? CG ? A LYS 31 CG 19 1 Y 1 A LYS 31 ? CD ? A LYS 31 CD 20 1 Y 1 A LYS 31 ? CE ? A LYS 31 CE 21 1 Y 1 A LYS 31 ? NZ ? A LYS 31 NZ 22 1 Y 1 A LYS 36 ? CG ? A LYS 36 CG 23 1 Y 1 A LYS 36 ? CD ? A LYS 36 CD 24 1 Y 1 A LYS 36 ? CE ? A LYS 36 CE 25 1 Y 1 A LYS 36 ? NZ ? A LYS 36 NZ 26 1 Y 1 A ASP 38 ? CG ? A ASP 38 CG 27 1 Y 1 A ASP 38 ? OD1 ? A ASP 38 OD1 28 1 Y 1 A ASP 38 ? OD2 ? A ASP 38 OD2 29 1 Y 1 A GLU 39 ? CG ? A GLU 39 CG 30 1 Y 1 A GLU 39 ? CD ? A GLU 39 CD 31 1 Y 1 A GLU 39 ? OE1 ? A GLU 39 OE1 32 1 Y 1 A GLU 39 ? OE2 ? A GLU 39 OE2 33 1 Y 1 A ASN 40 ? CG ? A ASN 40 CG 34 1 Y 1 A ASN 40 ? OD1 ? A ASN 40 OD1 35 1 Y 1 A ASN 40 ? ND2 ? A ASN 40 ND2 36 1 Y 1 A LYS 44 ? CG ? A LYS 44 CG 37 1 Y 1 A LYS 44 ? CD ? A LYS 44 CD 38 1 Y 1 A LYS 44 ? CE ? A LYS 44 CE 39 1 Y 1 A LYS 44 ? NZ ? A LYS 44 NZ 40 1 Y 1 A THR 55 ? OG1 ? A THR 55 OG1 41 1 Y 1 A THR 55 ? CG2 ? A THR 55 CG2 42 1 Y 1 A LYS 62 ? CG ? A LYS 62 CG 43 1 Y 1 A LYS 62 ? CD ? A LYS 62 CD 44 1 Y 1 A LYS 62 ? CE ? A LYS 62 CE 45 1 Y 1 A LYS 62 ? NZ ? A LYS 62 NZ 46 1 Y 1 A GLU 63 ? CG ? A GLU 63 CG 47 1 Y 1 A GLU 63 ? CD ? A GLU 63 CD 48 1 Y 1 A GLU 63 ? OE1 ? A GLU 63 OE1 49 1 Y 1 A GLU 63 ? OE2 ? A GLU 63 OE2 50 1 Y 1 A THR 64 ? OG1 ? A THR 64 OG1 51 1 Y 1 A THR 64 ? CG2 ? A THR 64 CG2 52 1 Y 1 A SER 66 ? OG ? A SER 66 OG 53 1 Y 1 A LYS 84 ? CG ? A LYS 84 CG 54 1 Y 1 A LYS 84 ? CD ? A LYS 84 CD 55 1 Y 1 A LYS 84 ? CE ? A LYS 84 CE 56 1 Y 1 A LYS 84 ? NZ ? A LYS 84 NZ 57 1 Y 1 A ARG 85 ? CG ? A ARG 85 CG 58 1 Y 1 A ARG 85 ? CD ? A ARG 85 CD 59 1 Y 1 A ARG 85 ? NE ? A ARG 85 NE 60 1 Y 1 A ARG 85 ? CZ ? A ARG 85 CZ 61 1 Y 1 A ARG 85 ? NH1 ? A ARG 85 NH1 62 1 Y 1 A ARG 85 ? NH2 ? A ARG 85 NH2 63 1 Y 1 A GLU 113 ? CG ? A GLU 113 CG 64 1 Y 1 A GLU 113 ? CD ? A GLU 113 CD 65 1 Y 1 A GLU 113 ? OE1 ? A GLU 113 OE1 66 1 Y 1 A GLU 113 ? OE2 ? A GLU 113 OE2 67 1 Y 1 A SER 116 ? OG ? A SER 116 OG 68 1 Y 1 A ASP 118 ? CG ? A ASP 118 CG 69 1 Y 1 A ASP 118 ? OD1 ? A ASP 118 OD1 70 1 Y 1 A ASP 118 ? OD2 ? A ASP 118 OD2 71 1 Y 1 A ARG 129 ? CG ? A ARG 129 CG 72 1 Y 1 A ARG 129 ? CD ? A ARG 129 CD 73 1 Y 1 A ARG 129 ? NE ? A ARG 129 NE 74 1 Y 1 A ARG 129 ? CZ ? A ARG 129 CZ 75 1 Y 1 A ARG 129 ? NH1 ? A ARG 129 NH1 76 1 Y 1 A ARG 129 ? NH2 ? A ARG 129 NH2 77 1 Y 1 A ARG 147 ? CG ? A ARG 147 CG 78 1 Y 1 A ARG 147 ? CD ? A ARG 147 CD 79 1 Y 1 A ARG 147 ? NE ? A ARG 147 NE 80 1 Y 1 A ARG 147 ? CZ ? A ARG 147 CZ 81 1 Y 1 A ARG 147 ? NH1 ? A ARG 147 NH1 82 1 Y 1 A ARG 147 ? NH2 ? A ARG 147 NH2 83 1 Y 1 A LYS 163 ? CG ? A LYS 163 CG 84 1 Y 1 A LYS 163 ? CD ? A LYS 163 CD 85 1 Y 1 A LYS 163 ? CE ? A LYS 163 CE 86 1 Y 1 A LYS 163 ? NZ ? A LYS 163 NZ 87 1 Y 1 A SER 183 ? OG ? A SER 183 OG 88 1 Y 1 A ARG 185 ? CG ? A ARG 185 CG 89 1 Y 1 A ARG 185 ? CD ? A ARG 185 CD 90 1 Y 1 A ARG 185 ? NE ? A ARG 185 NE 91 1 Y 1 A ARG 185 ? CZ ? A ARG 185 CZ 92 1 Y 1 A ARG 185 ? NH1 ? A ARG 185 NH1 93 1 Y 1 A ARG 185 ? NH2 ? A ARG 185 NH2 94 1 Y 1 A LYS 197 ? CG ? A LYS 197 CG 95 1 Y 1 A LYS 197 ? CD ? A LYS 197 CD 96 1 Y 1 A LYS 197 ? CE ? A LYS 197 CE 97 1 Y 1 A LYS 197 ? NZ ? A LYS 197 NZ 98 1 Y 1 A HIS 234 ? CG ? A HIS 234 CG 99 1 Y 1 A HIS 234 ? ND1 ? A HIS 234 ND1 100 1 Y 1 A HIS 234 ? CD2 ? A HIS 234 CD2 101 1 Y 1 A HIS 234 ? CE1 ? A HIS 234 CE1 102 1 Y 1 A HIS 234 ? NE2 ? A HIS 234 NE2 103 1 N 1 B NAG 1 ? O1 ? B NAG 1 O1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 235 ? A ALA 235 2 1 Y 1 A SER 236 ? A SER 236 3 1 Y 1 A SER 237 ? A SER 237 4 1 Y 1 A ASN 238 ? A ASN 238 5 1 Y 1 A ILE 239 ? A ILE 239 6 1 Y 1 A ASP 240 ? A ASP 240 7 1 Y 1 A PRO 241 ? A PRO 241 8 1 Y 1 A LEU 242 ? A LEU 242 9 1 Y 1 A ASP 243 ? A ASP 243 10 1 Y 1 A LEU 244 ? A LEU 244 11 1 Y 1 A THR 245 ? A THR 245 12 1 Y 1 A SER 246 ? A SER 246 13 1 Y 1 A PHE 247 ? A PHE 247 14 1 Y 1 A VAL 248 ? A VAL 248 15 1 Y 1 A LEU 249 ? A LEU 249 16 1 Y 1 A HIS 250 ? A HIS 250 17 1 Y 1 A GLU 251 ? A GLU 251 18 1 Y 1 A ALA 252 ? A ALA 252 19 1 Y 1 A ILE 253 ? A ILE 253 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 ? NAG 744 n B 2 GAL 2 B GAL 2 ? GAL 745 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGalpb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-Galp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 GAL 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MANGANESE (II) ION' MN 4 'CALCIUM ION' CA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1SBA _pdbx_initial_refinement_model.details 'PDB ENTRY 1SBA' #