data_1SDV # _entry.id 1SDV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1SDV RCSB RCSB021625 WWPDB D_1000021625 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1FF0 'This entry has the same mutations as 1FF0 entry to stabilize it from autoproteolysis' unspecified PDB 1SDT . unspecified PDB 1SDU . unspecified # _pdbx_database_status.entry_id 1SDV _pdbx_database_status.status_code REL _pdbx_database_status.recvd_initial_deposition_date 2004-02-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mahalingam, B.' 1 'Wang, Y.-F.' 2 'Boross, P.I.' 3 'Tozser, J.' 4 'Louis, J.M.' 5 'Harrison, R.W.' 6 'Weber, I.T.' 7 # _citation.id primary _citation.title ;Crystal structures of HIV protease V82A and L90M mutants reveal changes in the indinavir-binding site ; _citation.journal_abbrev Eur.J.Biochem. _citation.journal_volume 271 _citation.page_first 1516 _citation.page_last 1524 _citation.year 2004 _citation.journal_id_ASTM EJBCAI _citation.country IX _citation.journal_id_ISSN 0014-2956 _citation.journal_id_CSD 0262 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15066177 _citation.pdbx_database_id_DOI 10.1111/j.1432-1033.2004.04060.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mahalingam, B.' 1 primary 'Wang, Y.-F.' 2 primary 'Boross, P.I.' 3 primary 'Tozser, J.' 4 primary 'Louis, J.M.' 5 primary 'Harrison, R.W.' 6 primary 'Weber, I.T.' 7 # _cell.entry_id 1SDV _cell.length_a 85.820 _cell.length_b 58.726 _cell.length_c 46.592 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SDV _symmetry.cell_setting orthorhombic _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'protease RETROPEPSIN' 10712.623 2 3.4.23.16 ? ? 'complexed with indinavir' 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn ;N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE ; 613.789 1 ? ? ? ? 4 water nat water 18.015 183 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HIV-1 PROTEASE' # _entity_name_sys.entity_id 1 _entity_name_sys.name E.C.3.4.23.16 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PANIIGRNLLTQIGATLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PANIIGRNLLTQIGATLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 ILE n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 ILE n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 ALA n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 ALA n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 ALA n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lentivirus _entity_src_gen.pdbx_gene_src_gene gag-pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV1BR _struct_ref.pdbx_db_accession P03367 _struct_ref.pdbx_align_begin 69 _struct_ref.pdbx_seq_one_letter_code ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1SDV A 1 ? 99 ? P03367 69 ? 167 ? 1 99 2 1 1SDV B 1 ? 99 ? P03367 69 ? 167 ? 101 199 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1SDV LYS A 7 ? UNP P03367 GLN 75 VARIANT 7 1 1 1SDV ILE A 33 ? UNP P03367 LEU 101 VARIANT 33 2 1 1SDV ILE A 63 ? UNP P03367 LEU 131 VARIANT 63 3 1 1SDV ALA A 67 ? UNP P03367 CYS 135 VARIANT 67 4 1 1SDV ALA A 82 ? UNP P03367 VAL 150 VARIANT 82 5 1 1SDV ALA A 95 ? UNP P03367 CYS 163 VARIANT 95 6 2 1SDV LYS B 7 ? UNP P03367 GLN 75 VARIANT 107 7 2 1SDV ILE B 33 ? UNP P03367 LEU 101 VARIANT 133 8 2 1SDV ILE B 63 ? UNP P03367 LEU 131 VARIANT 163 9 2 1SDV ALA B 67 ? UNP P03367 CYS 135 VARIANT 167 10 2 1SDV ALA B 82 ? UNP P03367 VAL 150 VARIANT 182 11 2 1SDV ALA B 95 ? UNP P03367 CYS 163 VARIANT 195 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MK1 non-polymer . ;N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE ; INDINAVIR 'C36 H47 N5 O4' 613.789 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1SDV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 46.5 _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_meas ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details 'Citrate/phosphate buffer, NaCl , pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-06-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97903 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X26C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X26C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97903 # _reflns.entry_id 1SDV _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 1.4 _reflns.number_obs ? _reflns.number_all 41646 _reflns.percent_possible_obs 88.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.4 _reflns_shell.d_res_low 1.43 _reflns_shell.percent_possible_all 91.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1SDV _refine.ls_number_reflns_obs 41492 _refine.ls_number_reflns_all 41492 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 88.6 _refine.ls_R_factor_obs 0.1597 _refine.ls_R_factor_all 0.1604 _refine.ls_R_factor_R_work 0.1597 _refine.ls_R_factor_R_free 0.2054 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2074 _refine.ls_number_parameters 15701 _refine.ls_number_restraints 19180 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model 1DAZ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1SDV _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 2 _refine_analyze.occupancy_sum_hydrogen 1627.00 _refine_analyze.occupancy_sum_non_hydrogen 1738.00 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1513 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 184 _refine_hist.number_atoms_total 1744 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.028 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0280 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.055 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.066 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.043 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.003 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.034 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.070 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1SDV _pdbx_refine.R_factor_all_no_cutoff 0.1604 _pdbx_refine.R_factor_obs_no_cutoff 0.1597 _pdbx_refine.free_R_factor_no_cutoff 0.2054 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 2074 _pdbx_refine.R_factor_all_4sig_cutoff 0.1503 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1496 _pdbx_refine.free_R_factor_4sig_cutoff 0.1909 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1872 _pdbx_refine.number_reflns_obs_4sig_cutoff 37584 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1SDV _struct.title 'Crystal structures of HIV protease V82A and L90M mutants reveal changes in indinavir binding site.' _struct.pdbx_descriptor 'PROTEASE RETROPEPSIN (E.C.3.4.23.16)/indinavir complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1SDV _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Drug resistance; HIV-1 Protease, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details 'Subunits A and B form a homodimer in the asymmetric unit' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLY B 86 ? ILE B 93 ? GLY B 186 ILE B 193 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 196 ASN B 198 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 102 ILE B 103 B 1 LYS A 43 ? GLY A 49 ? LYS A 43 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? ILE A 33 ? VAL A 32 ILE A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 143 GLY B 149 C 2 GLY B 52 ? ILE B 66 ? GLY B 152 ILE B 166 C 3 HIS B 69 ? VAL B 77 ? HIS B 169 VAL B 177 C 4 VAL B 32 ? ILE B 33 ? VAL B 132 ILE B 133 C 5 ILE B 84 ? ILE B 85 ? ILE B 184 ILE B 185 C 6 GLN B 18 ? LEU B 24 ? GLN B 118 LEU B 124 C 7 LEU B 10 ? ILE B 15 ? LEU B 110 ILE B 115 C 8 GLY B 52 ? ILE B 66 ? GLY B 152 ILE B 166 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 197 A 2 3 O THR B 96 ? O THR B 196 N ASN A 98 ? N ASN A 98 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 103 B 1 2 N GLY A 49 ? N GLY A 49 O GLY A 52 ? O GLY A 52 B 2 3 N ILE A 64 ? N ILE A 64 O ALA A 71 ? O ALA A 71 B 3 4 O LEU A 76 ? O LEU A 76 N ILE A 33 ? N ILE A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 43 ? N LYS B 143 O GLN B 58 ? O GLN B 158 C 2 3 N ARG B 57 ? N ARG B 157 O VAL B 77 ? O VAL B 177 C 3 4 O LEU B 76 ? O LEU B 176 N ILE B 33 ? N ILE B 133 C 4 5 N VAL B 32 ? N VAL B 132 O ILE B 84 ? O ILE B 184 C 5 6 O ILE B 85 ? O ILE B 185 N LEU B 23 ? N LEU B 123 C 6 7 O LYS B 20 ? O LYS B 120 N ILE B 13 ? N ILE B 113 C 7 8 N LYS B 14 ? N LYS B 114 O GLU B 65 ? O GLU B 165 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CL B 500' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 501' AC3 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE MK1 B 902' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 TRP B 6 ? TRP B 106 . ? 1_555 ? 2 AC2 4 THR A 74 ? THR A 74 . ? 1_555 ? 3 AC2 4 ASN A 88 ? ASN A 88 . ? 1_555 ? 4 AC2 4 HOH F . ? HOH A 357 . ? 1_555 ? 5 AC2 4 ARG B 41 ? ARG B 141 . ? 4_555 ? 6 AC3 15 LEU A 23 ? LEU A 23 . ? 1_555 ? 7 AC3 15 ASP A 25 ? ASP A 25 . ? 1_555 ? 8 AC3 15 GLY A 27 ? GLY A 27 . ? 1_555 ? 9 AC3 15 GLY A 48 ? GLY A 48 . ? 1_555 ? 10 AC3 15 GLY A 49 ? GLY A 49 . ? 1_555 ? 11 AC3 15 ILE A 84 ? ILE A 84 . ? 1_555 ? 12 AC3 15 ASP B 25 ? ASP B 125 . ? 1_555 ? 13 AC3 15 GLY B 27 ? GLY B 127 . ? 1_555 ? 14 AC3 15 ALA B 28 ? ALA B 128 . ? 1_555 ? 15 AC3 15 ASP B 29 ? ASP B 129 . ? 1_555 ? 16 AC3 15 ASP B 30 ? ASP B 130 . ? 1_555 ? 17 AC3 15 GLY B 48 ? GLY B 148 . ? 1_555 ? 18 AC3 15 GLY B 49 ? GLY B 149 . ? 1_555 ? 19 AC3 15 PRO B 81 ? PRO B 181 . ? 1_555 ? 20 AC3 15 HOH G . ? HOH B 316 . ? 1_555 ? # _atom_sites.entry_id 1SDV _atom_sites.fract_transf_matrix[1][1] 0.011652 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017028 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021463 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 101 101 PRO PRO B . n B 1 2 GLN 2 102 102 GLN GLN B . n B 1 3 ILE 3 103 103 ILE ILE B . n B 1 4 THR 4 104 104 THR THR B . n B 1 5 LEU 5 105 105 LEU LEU B . n B 1 6 TRP 6 106 106 TRP TRP B . n B 1 7 LYS 7 107 107 LYS LYS B . n B 1 8 ARG 8 108 108 ARG ARG B . n B 1 9 PRO 9 109 109 PRO PRO B . n B 1 10 LEU 10 110 110 LEU LEU B . n B 1 11 VAL 11 111 111 VAL VAL B . n B 1 12 THR 12 112 112 THR THR B . n B 1 13 ILE 13 113 113 ILE ILE B . n B 1 14 LYS 14 114 114 LYS LYS B . n B 1 15 ILE 15 115 115 ILE ILE B . n B 1 16 GLY 16 116 116 GLY GLY B . n B 1 17 GLY 17 117 117 GLY GLY B . n B 1 18 GLN 18 118 118 GLN GLN B . n B 1 19 LEU 19 119 119 LEU LEU B . n B 1 20 LYS 20 120 120 LYS LYS B . n B 1 21 GLU 21 121 121 GLU GLU B . n B 1 22 ALA 22 122 122 ALA ALA B . n B 1 23 LEU 23 123 123 LEU LEU B . n B 1 24 LEU 24 124 124 LEU LEU B . n B 1 25 ASP 25 125 125 ASP ASP B . n B 1 26 THR 26 126 126 THR THR B . n B 1 27 GLY 27 127 127 GLY GLY B . n B 1 28 ALA 28 128 128 ALA ALA B . n B 1 29 ASP 29 129 129 ASP ASP B . n B 1 30 ASP 30 130 130 ASP ASP B . n B 1 31 THR 31 131 131 THR THR B . n B 1 32 VAL 32 132 132 VAL VAL B . n B 1 33 ILE 33 133 133 ILE ILE B . n B 1 34 GLU 34 134 134 GLU GLU B . n B 1 35 GLU 35 135 135 GLU GLU B . n B 1 36 MET 36 136 136 MET MET B . n B 1 37 SER 37 137 137 SER SER B . n B 1 38 LEU 38 138 138 LEU LEU B . n B 1 39 PRO 39 139 139 PRO PRO B . n B 1 40 GLY 40 140 140 GLY GLY B . n B 1 41 ARG 41 141 141 ARG ARG B . n B 1 42 TRP 42 142 142 TRP TRP B . n B 1 43 LYS 43 143 143 LYS LYS B . n B 1 44 PRO 44 144 144 PRO PRO B . n B 1 45 LYS 45 145 145 LYS LYS B . n B 1 46 MET 46 146 146 MET MET B . n B 1 47 ILE 47 147 147 ILE ILE B . n B 1 48 GLY 48 148 148 GLY GLY B . n B 1 49 GLY 49 149 149 GLY GLY B . n B 1 50 ILE 50 150 150 ILE ILE B . n B 1 51 GLY 51 151 151 GLY GLY B . n B 1 52 GLY 52 152 152 GLY GLY B . n B 1 53 PHE 53 153 153 PHE PHE B . n B 1 54 ILE 54 154 154 ILE ILE B . n B 1 55 LYS 55 155 155 LYS LYS B . n B 1 56 VAL 56 156 156 VAL VAL B . n B 1 57 ARG 57 157 157 ARG ARG B . n B 1 58 GLN 58 158 158 GLN GLN B . n B 1 59 TYR 59 159 159 TYR TYR B . n B 1 60 ASP 60 160 160 ASP ASP B . n B 1 61 GLN 61 161 161 GLN GLN B . n B 1 62 ILE 62 162 162 ILE ILE B . n B 1 63 ILE 63 163 163 ILE ILE B . n B 1 64 ILE 64 164 164 ILE ILE B . n B 1 65 GLU 65 165 165 GLU GLU B . n B 1 66 ILE 66 166 166 ILE ILE B . n B 1 67 ALA 67 167 167 ALA ALA B . n B 1 68 GLY 68 168 168 GLY GLY B . n B 1 69 HIS 69 169 169 HIS HIS B . n B 1 70 LYS 70 170 170 LYS LYS B . n B 1 71 ALA 71 171 171 ALA ALA B . n B 1 72 ILE 72 172 172 ILE ILE B . n B 1 73 GLY 73 173 173 GLY GLY B . n B 1 74 THR 74 174 174 THR THR B . n B 1 75 VAL 75 175 175 VAL VAL B . n B 1 76 LEU 76 176 176 LEU LEU B . n B 1 77 VAL 77 177 177 VAL VAL B . n B 1 78 GLY 78 178 178 GLY GLY B . n B 1 79 PRO 79 179 179 PRO PRO B . n B 1 80 THR 80 180 180 THR THR B . n B 1 81 PRO 81 181 181 PRO PRO B . n B 1 82 ALA 82 182 182 ALA ALA B . n B 1 83 ASN 83 183 183 ASN ASN B . n B 1 84 ILE 84 184 184 ILE ILE B . n B 1 85 ILE 85 185 185 ILE ILE B . n B 1 86 GLY 86 186 186 GLY GLY B . n B 1 87 ARG 87 187 187 ARG ARG B . n B 1 88 ASN 88 188 188 ASN ASN B . n B 1 89 LEU 89 189 189 LEU LEU B . n B 1 90 LEU 90 190 190 LEU LEU B . n B 1 91 THR 91 191 191 THR THR B . n B 1 92 GLN 92 192 192 GLN GLN B . n B 1 93 ILE 93 193 193 ILE ILE B . n B 1 94 GLY 94 194 194 GLY GLY B . n B 1 95 ALA 95 195 195 ALA ALA B . n B 1 96 THR 96 196 196 THR THR B . n B 1 97 LEU 97 197 197 LEU LEU B . n B 1 98 ASN 98 198 198 ASN ASN B . n B 1 99 PHE 99 199 199 PHE PHE B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5320 ? 1 MORE -34 ? 1 'SSA (A^2)' 9520 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-05-25 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 SHELXL-97 refinement . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 29 ? ? CG A ASP 29 ? ? OD2 A ASP 29 ? ? 112.04 118.30 -6.26 0.90 N 2 1 CD A ARG 41 ? ? NE A ARG 41 ? ? CZ A ARG 41 ? ? 132.27 123.60 8.67 1.40 N 3 1 NE A ARG 41 ? ? CZ A ARG 41 ? ? NH2 A ARG 41 ? ? 123.76 120.30 3.46 0.50 N 4 1 CD A ARG 57 ? ? NE A ARG 57 ? ? CZ A ARG 57 ? ? 134.35 123.60 10.75 1.40 N 5 1 C B ARG 141 ? ? N B TRP 142 ? ? CA B TRP 142 ? ? 140.86 121.70 19.16 2.50 Y # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 ;N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE ; MK1 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 501 501 CL CL A . D 2 CL 1 500 500 CL CL B . E 3 MK1 1 902 902 MK1 MK1 B . F 4 HOH 1 304 304 HOH HOH A . F 4 HOH 2 305 305 HOH HOH A . F 4 HOH 3 306 306 HOH HOH A . F 4 HOH 4 307 307 HOH HOH A . F 4 HOH 5 308 308 HOH HOH A . F 4 HOH 6 309 309 HOH HOH A . F 4 HOH 7 310 310 HOH HOH A . F 4 HOH 8 315 315 HOH HOH A . F 4 HOH 9 321 321 HOH HOH A . F 4 HOH 10 323 323 HOH HOH A . F 4 HOH 11 331 331 HOH HOH A . F 4 HOH 12 332 332 HOH HOH A . F 4 HOH 13 334 334 HOH HOH A . F 4 HOH 14 336 336 HOH HOH A . F 4 HOH 15 338 338 HOH HOH A . F 4 HOH 16 339 339 HOH HOH A . F 4 HOH 17 340 340 HOH HOH A . F 4 HOH 18 342 342 HOH HOH A . F 4 HOH 19 344 344 HOH HOH A . F 4 HOH 20 348 348 HOH HOH A . F 4 HOH 21 354 354 HOH HOH A . F 4 HOH 22 355 355 HOH HOH A . F 4 HOH 23 357 357 HOH HOH A . F 4 HOH 24 361 361 HOH HOH A . F 4 HOH 25 363 363 HOH HOH A . F 4 HOH 26 365 365 HOH HOH A . F 4 HOH 27 369 369 HOH HOH A . F 4 HOH 28 370 370 HOH HOH A . F 4 HOH 29 371 371 HOH HOH A . F 4 HOH 30 372 372 HOH HOH A . F 4 HOH 31 375 375 HOH HOH A . F 4 HOH 32 376 376 HOH HOH A . F 4 HOH 33 377 377 HOH HOH A . F 4 HOH 34 378 378 HOH HOH A . F 4 HOH 35 380 380 HOH HOH A . F 4 HOH 36 386 386 HOH HOH A . F 4 HOH 37 389 389 HOH HOH A . F 4 HOH 38 390 390 HOH HOH A . F 4 HOH 39 391 391 HOH HOH A . F 4 HOH 40 392 392 HOH HOH A . F 4 HOH 41 395 395 HOH HOH A . F 4 HOH 42 399 399 HOH HOH A . F 4 HOH 43 400 400 HOH HOH A . F 4 HOH 44 401 401 HOH HOH A . F 4 HOH 45 402 402 HOH HOH A . F 4 HOH 46 404 404 HOH HOH A . F 4 HOH 47 405 405 HOH HOH A . F 4 HOH 48 407 407 HOH HOH A . F 4 HOH 49 410 410 HOH HOH A . F 4 HOH 50 411 411 HOH HOH A . F 4 HOH 51 412 412 HOH HOH A . F 4 HOH 52 413 413 HOH HOH A . F 4 HOH 53 414 414 HOH HOH A . F 4 HOH 54 416 416 HOH HOH A . F 4 HOH 55 418 418 HOH HOH A . F 4 HOH 56 420 420 HOH HOH A . F 4 HOH 57 421 421 HOH HOH A . F 4 HOH 58 423 423 HOH HOH A . F 4 HOH 59 424 424 HOH HOH A . F 4 HOH 60 426 426 HOH HOH A . F 4 HOH 61 428 428 HOH HOH A . F 4 HOH 62 429 429 HOH HOH A . F 4 HOH 63 435 435 HOH HOH A . F 4 HOH 64 439 439 HOH HOH A . F 4 HOH 65 440 440 HOH HOH A . F 4 HOH 66 441 441 HOH HOH A . F 4 HOH 67 442 442 HOH HOH A . F 4 HOH 68 444 444 HOH HOH A . F 4 HOH 69 446 446 HOH HOH A . F 4 HOH 70 449 449 HOH HOH A . F 4 HOH 71 451 451 HOH HOH A . F 4 HOH 72 455 455 HOH HOH A . F 4 HOH 73 457 457 HOH HOH A . F 4 HOH 74 459 459 HOH HOH A . F 4 HOH 75 464 464 HOH HOH A . F 4 HOH 76 465 465 HOH HOH A . F 4 HOH 77 466 466 HOH HOH A . F 4 HOH 78 467 467 HOH HOH A . F 4 HOH 79 468 468 HOH HOH A . F 4 HOH 80 469 469 HOH HOH A . F 4 HOH 81 471 471 HOH HOH A . F 4 HOH 82 472 472 HOH HOH A . F 4 HOH 83 473 473 HOH HOH A . F 4 HOH 84 478 478 HOH HOH A . F 4 HOH 85 480 480 HOH HOH A . F 4 HOH 86 481 481 HOH HOH A . F 4 HOH 87 482 482 HOH HOH A . G 4 HOH 1 301 301 HOH HOH B . G 4 HOH 2 302 302 HOH HOH B . G 4 HOH 3 303 303 HOH HOH B . G 4 HOH 4 311 311 HOH HOH B . G 4 HOH 5 312 312 HOH HOH B . G 4 HOH 6 313 313 HOH HOH B . G 4 HOH 7 314 314 HOH HOH B . G 4 HOH 8 316 316 HOH HOH B . G 4 HOH 9 317 317 HOH HOH B . G 4 HOH 10 318 318 HOH HOH B . G 4 HOH 11 319 319 HOH HOH B . G 4 HOH 12 320 320 HOH HOH B . G 4 HOH 13 322 322 HOH HOH B . G 4 HOH 14 324 324 HOH HOH B . G 4 HOH 15 325 325 HOH HOH B . G 4 HOH 16 326 326 HOH HOH B . G 4 HOH 17 327 327 HOH HOH B . G 4 HOH 18 328 328 HOH HOH B . G 4 HOH 19 329 329 HOH HOH B . G 4 HOH 20 330 330 HOH HOH B . G 4 HOH 21 333 333 HOH HOH B . G 4 HOH 22 335 335 HOH HOH B . G 4 HOH 23 337 337 HOH HOH B . G 4 HOH 24 341 341 HOH HOH B . G 4 HOH 25 343 343 HOH HOH B . G 4 HOH 26 345 345 HOH HOH B . G 4 HOH 27 346 346 HOH HOH B . G 4 HOH 28 347 347 HOH HOH B . G 4 HOH 29 349 349 HOH HOH B . G 4 HOH 30 350 350 HOH HOH B . G 4 HOH 31 351 351 HOH HOH B . G 4 HOH 32 352 352 HOH HOH B . G 4 HOH 33 353 353 HOH HOH B . G 4 HOH 34 356 356 HOH HOH B . G 4 HOH 35 358 358 HOH HOH B . G 4 HOH 36 359 359 HOH HOH B . G 4 HOH 37 360 360 HOH HOH B . G 4 HOH 38 362 362 HOH HOH B . G 4 HOH 39 364 364 HOH HOH B . G 4 HOH 40 366 366 HOH HOH B . G 4 HOH 41 367 367 HOH HOH B . G 4 HOH 42 368 368 HOH HOH B . G 4 HOH 43 373 373 HOH HOH B . G 4 HOH 44 374 374 HOH HOH B . G 4 HOH 45 379 379 HOH HOH B . G 4 HOH 46 381 381 HOH HOH B . G 4 HOH 47 382 382 HOH HOH B . G 4 HOH 48 383 383 HOH HOH B . G 4 HOH 49 384 384 HOH HOH B . G 4 HOH 50 385 385 HOH HOH B . G 4 HOH 51 387 387 HOH HOH B . G 4 HOH 52 388 388 HOH HOH B . G 4 HOH 53 393 393 HOH HOH B . G 4 HOH 54 394 394 HOH HOH B . G 4 HOH 55 396 396 HOH HOH B . G 4 HOH 56 397 397 HOH HOH B . G 4 HOH 57 398 398 HOH HOH B . G 4 HOH 58 403 403 HOH HOH B . G 4 HOH 59 406 406 HOH HOH B . G 4 HOH 60 408 408 HOH HOH B . G 4 HOH 61 409 409 HOH HOH B . G 4 HOH 62 415 415 HOH HOH B . G 4 HOH 63 417 417 HOH HOH B . G 4 HOH 64 419 419 HOH HOH B . G 4 HOH 65 422 422 HOH HOH B . G 4 HOH 66 425 425 HOH HOH B . G 4 HOH 67 427 427 HOH HOH B . G 4 HOH 68 430 430 HOH HOH B . G 4 HOH 69 431 431 HOH HOH B . G 4 HOH 70 432 432 HOH HOH B . G 4 HOH 71 433 433 HOH HOH B . G 4 HOH 72 434 434 HOH HOH B . G 4 HOH 73 436 436 HOH HOH B . G 4 HOH 74 437 437 HOH HOH B . G 4 HOH 75 438 438 HOH HOH B . G 4 HOH 76 443 443 HOH HOH B . G 4 HOH 77 445 445 HOH HOH B . G 4 HOH 78 447 447 HOH HOH B . G 4 HOH 79 448 448 HOH HOH B . G 4 HOH 80 450 450 HOH HOH B . G 4 HOH 81 452 452 HOH HOH B . G 4 HOH 82 453 453 HOH HOH B . G 4 HOH 83 454 454 HOH HOH B . G 4 HOH 84 456 456 HOH HOH B . G 4 HOH 85 458 458 HOH HOH B . G 4 HOH 86 460 460 HOH HOH B . G 4 HOH 87 461 461 HOH HOH B . G 4 HOH 88 462 462 HOH HOH B . G 4 HOH 89 463 463 HOH HOH B . G 4 HOH 90 470 470 HOH HOH B . G 4 HOH 91 474 474 HOH HOH B . G 4 HOH 92 475 475 HOH HOH B . G 4 HOH 93 476 476 HOH HOH B . G 4 HOH 94 477 477 HOH HOH B . G 4 HOH 95 479 479 HOH HOH B . G 4 HOH 96 483 483 HOH HOH B . #