HEADER OXIDOREDUCTASE(SUPEROXIDE ACCEPTOR) 14-JUN-91 1SDY TITLE STRUCTURE SOLUTION AND MOLECULAR DYNAMICS REFINEMENT OF THE YEAST CU, TITLE 2 ZN ENZYME SUPEROXIDE DISMUTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER,ZINC SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS OXIDOREDUCTASE(SUPEROXIDE ACCEPTOR) EXPDTA X-RAY DIFFRACTION AUTHOR K.DJINOVIC,G.GATTI,A.CODA,L.ANTOLINI,G.PELOSI,A.DESIDERI,M.FALCONI, AUTHOR 2 F.MARMOCCHI,G.ROTILIO,M.BOLOGNESI REVDAT 4 29-NOV-17 1SDY 1 REMARK HELIX REVDAT 3 24-FEB-09 1SDY 1 VERSN REVDAT 2 01-APR-03 1SDY 1 JRNL REVDAT 1 31-JAN-94 1SDY 0 JRNL AUTH K.DJINOVIC,G.GATTI,A.CODA,L.ANTOLINI,G.PELOSI,A.DESIDERI, JRNL AUTH 2 M.FALCONI,F.MARMOCCHI,G.ROLILIO,M.BOLOGNESI JRNL TITL STRUCTURE SOLUTION AND MOLECULAR DYNAMICS REFINEMENT OF THE JRNL TITL 2 YEAST CU,ZN ENZYME SUPEROXIDE DISMUTASE. JRNL REF ACTA CRYSTALLOGR.,SECT.B V. 47 918 1991 JRNL REFN ISSN 0108-7681 JRNL PMID 1772629 JRNL DOI 10.1107/S0108768191004949 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.D.GETZOFF,J.A.TAINER,M.M.STEMPIEN,G.I.BELL,R.A.HALLEWELL REMARK 1 TITL EVOLUTION OF CUZN SUPEROXIDE DISMUTASE AND THE GREEK KEY REMARK 1 TITL 2 BETA-BARREL STRUCTURAL MOTIF REMARK 1 REF PROTEINS V. 5 322 1989 REMARK 1 REFN ISSN 0887-3585 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.DESIDERI,M.FALCONI,V.PARISI,G.ROTILIO REMARK 1 TITL CONSERVATION OF LOCAL ELECTRIC FIELDS IN THE EVOLUTION OF REMARK 1 TITL 2 CU,ZN SUPEROXIDE DISMUTASE REMARK 1 REF FEBS LETT. V. 250 45 1989 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 3 REMARK 1 AUTH F.FRIGERIO,M.FALCONI,G.GATTI,M.BOLOGNESI,A.DESIDERI, REMARK 1 AUTH 2 F.MARMOCCHI,G.ROTILIO REMARK 1 TITL CRYSTALLOGRAPHIC CHARACTERIZATION AND THREE-DIMENSIONAL REMARK 1 TITL 2 MODEL OF YEAST CU,ZN SUPEROXIDE DISMUTASE REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 160 677 1989 REMARK 1 REFN ISSN 0006-291X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 513 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.016 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.912 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 27.160; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.019 ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : 0.020 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : 0.098 ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 52.65000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 71.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRANSFORMATION PRESENTED ON *MTRIX 1* RECORDS BELOW REMARK 300 WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *A* WHEN REMARK 300 APPLIED TO CHAIN *B*. THE TRANSFORMATION PRESENTED ON REMARK 300 *MTRIX 2* RECORDS BELOW WILL YIELD APPROXIMATE COORDINATES REMARK 300 FOR CHAIN *C* WHEN APPLIED TO CHAIN *D*. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 3 OE1 REMARK 480 ALA A 23 CB REMARK 480 SER A 25A CB OG REMARK 480 GLU A 75 CD OE1 OE2 REMARK 480 ASP A 128 CB CG OD1 OD2 REMARK 480 THR A 129 N CA CB OG1 CG2 REMARK 480 GLU A 130 OE1 OE2 REMARK 480 LYS A 134 CD CE NZ REMARK 480 LYS B 19 CD CE NZ REMARK 480 GLU B 21 CD OE1 OE2 REMARK 480 GLU B 25 CG REMARK 480 LYS B 66 CE NZ REMARK 480 GLU B 89 CB CG CD OE1 OE2 REMARK 480 ASN B 90 CB REMARK 480 LYS B 98 NZ REMARK 480 ASN B 151 O OXT REMARK 480 LYS C 66 NZ REMARK 480 GLU C 75 CB CG CD OE1 OE2 REMARK 480 LYS C 86 CD REMARK 480 SER C 96 OG REMARK 480 LYS C 126 CE NZ REMARK 480 ASP C 128 O CB CG OD1 OD2 REMARK 480 THR C 129 N CG2 REMARK 480 GLU C 130 CG REMARK 480 LYS D 19 CD REMARK 480 GLU D 25B OE2 REMARK 480 GLU D 75 CB CG CD OE1 OE2 REMARK 480 LYS D 86 CD CE NZ REMARK 480 SER D 96 OG REMARK 480 GLU D 130 CD OE1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL D 2 C GLN D 3 N 0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 77 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 141 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASN A 151 N - CA - CB ANGL. DEV. = 12.4 DEGREES REMARK 500 THR B 28 CA - CB - CG2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG B 113 CD - NE - CZ ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG B 113 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG B 113 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 SER B 114 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 VAL C 17 CG1 - CB - CG2 ANGL. DEV. = -14.5 DEGREES REMARK 500 ARG C 41 CD - NE - CZ ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG C 41 NE - CZ - NH1 ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG C 41 NE - CZ - NH2 ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG C 77 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 THR C 87 CA - CB - CG2 ANGL. DEV. = -9.0 DEGREES REMARK 500 LEU C 101 CB - CG - CD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 PRO C 107 C - N - CA ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG C 141 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG C 141 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 VAL D 2 O - C - N ANGL. DEV. = -19.3 DEGREES REMARK 500 VAL D 17 CA - CB - CG1 ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG D 41 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG D 41 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG D 77 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG D 77 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP D 88 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG D 113 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG D 141 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG D 141 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 126 30.63 -99.62 REMARK 500 LYS B 67 -169.02 -111.48 REMARK 500 LEU B 124 22.99 44.91 REMARK 500 PRO B 140 -179.87 -64.63 REMARK 500 ARG B 141 78.97 -118.19 REMARK 500 ASN C 63 68.81 -151.62 REMARK 500 LYS C 66 41.99 38.87 REMARK 500 LEU C 124 16.06 55.19 REMARK 500 PRO C 140 174.02 -58.20 REMARK 500 PRO D 140 177.60 -56.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL D 2 GLN D 3 149.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL D 2 -18.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 152 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 154 O REMARK 620 2 HIS A 44 ND1 120.3 REMARK 620 3 HIS A 61 NE2 73.3 78.7 REMARK 620 4 HIS A 46 NE2 88.0 148.2 98.0 REMARK 620 5 HIS A 118 NE2 83.2 90.4 143.7 108.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 153 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 ND1 REMARK 620 2 HIS A 61 ND1 104.4 REMARK 620 3 HIS A 69 ND1 129.3 112.8 REMARK 620 4 ASP A 81 OD1 110.7 104.0 92.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 152 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 61 NE2 REMARK 620 2 HIS B 46 NE2 95.5 REMARK 620 3 HIS B 44 ND1 84.1 143.0 REMARK 620 4 HIS B 118 NE2 155.8 104.0 88.8 REMARK 620 5 HOH B 154 O 76.0 103.8 111.8 85.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 153 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 78 ND1 REMARK 620 2 HIS B 69 ND1 121.3 REMARK 620 3 HIS B 61 ND1 107.0 103.7 REMARK 620 4 ASP B 81 OD1 115.0 96.0 113.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 152 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 44 ND1 REMARK 620 2 HIS C 46 NE2 139.5 REMARK 620 3 HOH C 154 O 124.0 89.6 REMARK 620 4 HIS C 118 NE2 98.7 101.3 93.3 REMARK 620 5 HIS C 61 NE2 79.0 90.0 75.6 164.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 153 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 61 ND1 REMARK 620 2 HIS C 78 ND1 111.1 REMARK 620 3 HIS C 69 ND1 110.7 126.2 REMARK 620 4 ASP C 81 OD1 102.3 107.8 94.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 152 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 46 NE2 REMARK 620 2 HIS D 118 NE2 109.6 REMARK 620 3 HOH D 154 O 103.7 77.0 REMARK 620 4 HIS D 61 NE2 93.4 149.9 78.9 REMARK 620 5 HIS D 44 ND1 140.0 96.3 111.6 76.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 153 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 78 ND1 REMARK 620 2 ASP D 81 OD1 103.6 REMARK 620 3 HIS D 61 ND1 115.0 110.2 REMARK 620 4 HIS D 69 ND1 124.7 91.6 108.2 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 THE HELIX EXTENDS TO RESIDUE 129 AND TO RESIDUES 136, 137 REMARK 650 AND 138 WITH BETA-TURNS. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: A REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: B REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: C REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: D REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU D 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 153 DBREF 1SDY A 2 151 UNP P00445 SODC_YEAST 1 153 DBREF 1SDY B 2 151 UNP P00445 SODC_YEAST 1 153 DBREF 1SDY C 2 151 UNP P00445 SODC_YEAST 1 153 DBREF 1SDY D 2 151 UNP P00445 SODC_YEAST 1 153 SEQRES 1 A 153 VAL GLN ALA VAL ALA VAL LEU LYS GLY ASP ALA GLY VAL SEQRES 2 A 153 SER GLY VAL VAL LYS PHE GLU GLN ALA SER GLU SER GLU SEQRES 3 A 153 PRO THR THR VAL SER TYR GLU ILE ALA GLY ASN SER PRO SEQRES 4 A 153 ASN ALA GLU ARG GLY PHE HIS ILE HIS GLU PHE GLY ASP SEQRES 5 A 153 ALA THR ASN GLY CYS VAL SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO PHE LYS LYS THR HIS GLY ALA PRO THR ASP GLU VAL SEQRES 7 A 153 ARG HIS VAL GLY ASP MET GLY ASN VAL LYS THR ASP GLU SEQRES 8 A 153 ASN GLY VAL ALA LYS GLY SER PHE LYS ASP SER LEU ILE SEQRES 9 A 153 LYS LEU ILE GLY PRO THR SER VAL VAL GLY ARG SER VAL SEQRES 10 A 153 VAL ILE HIS ALA GLY GLN ASP ASP LEU GLY LYS GLY ASP SEQRES 11 A 153 THR GLU GLU SER LEU LYS THR GLY ASN ALA GLY PRO ARG SEQRES 12 A 153 PRO ALA CYS GLY VAL ILE GLY LEU THR ASN SEQRES 1 B 153 VAL GLN ALA VAL ALA VAL LEU LYS GLY ASP ALA GLY VAL SEQRES 2 B 153 SER GLY VAL VAL LYS PHE GLU GLN ALA SER GLU SER GLU SEQRES 3 B 153 PRO THR THR VAL SER TYR GLU ILE ALA GLY ASN SER PRO SEQRES 4 B 153 ASN ALA GLU ARG GLY PHE HIS ILE HIS GLU PHE GLY ASP SEQRES 5 B 153 ALA THR ASN GLY CYS VAL SER ALA GLY PRO HIS PHE ASN SEQRES 6 B 153 PRO PHE LYS LYS THR HIS GLY ALA PRO THR ASP GLU VAL SEQRES 7 B 153 ARG HIS VAL GLY ASP MET GLY ASN VAL LYS THR ASP GLU SEQRES 8 B 153 ASN GLY VAL ALA LYS GLY SER PHE LYS ASP SER LEU ILE SEQRES 9 B 153 LYS LEU ILE GLY PRO THR SER VAL VAL GLY ARG SER VAL SEQRES 10 B 153 VAL ILE HIS ALA GLY GLN ASP ASP LEU GLY LYS GLY ASP SEQRES 11 B 153 THR GLU GLU SER LEU LYS THR GLY ASN ALA GLY PRO ARG SEQRES 12 B 153 PRO ALA CYS GLY VAL ILE GLY LEU THR ASN SEQRES 1 C 153 VAL GLN ALA VAL ALA VAL LEU LYS GLY ASP ALA GLY VAL SEQRES 2 C 153 SER GLY VAL VAL LYS PHE GLU GLN ALA SER GLU SER GLU SEQRES 3 C 153 PRO THR THR VAL SER TYR GLU ILE ALA GLY ASN SER PRO SEQRES 4 C 153 ASN ALA GLU ARG GLY PHE HIS ILE HIS GLU PHE GLY ASP SEQRES 5 C 153 ALA THR ASN GLY CYS VAL SER ALA GLY PRO HIS PHE ASN SEQRES 6 C 153 PRO PHE LYS LYS THR HIS GLY ALA PRO THR ASP GLU VAL SEQRES 7 C 153 ARG HIS VAL GLY ASP MET GLY ASN VAL LYS THR ASP GLU SEQRES 8 C 153 ASN GLY VAL ALA LYS GLY SER PHE LYS ASP SER LEU ILE SEQRES 9 C 153 LYS LEU ILE GLY PRO THR SER VAL VAL GLY ARG SER VAL SEQRES 10 C 153 VAL ILE HIS ALA GLY GLN ASP ASP LEU GLY LYS GLY ASP SEQRES 11 C 153 THR GLU GLU SER LEU LYS THR GLY ASN ALA GLY PRO ARG SEQRES 12 C 153 PRO ALA CYS GLY VAL ILE GLY LEU THR ASN SEQRES 1 D 153 VAL GLN ALA VAL ALA VAL LEU LYS GLY ASP ALA GLY VAL SEQRES 2 D 153 SER GLY VAL VAL LYS PHE GLU GLN ALA SER GLU SER GLU SEQRES 3 D 153 PRO THR THR VAL SER TYR GLU ILE ALA GLY ASN SER PRO SEQRES 4 D 153 ASN ALA GLU ARG GLY PHE HIS ILE HIS GLU PHE GLY ASP SEQRES 5 D 153 ALA THR ASN GLY CYS VAL SER ALA GLY PRO HIS PHE ASN SEQRES 6 D 153 PRO PHE LYS LYS THR HIS GLY ALA PRO THR ASP GLU VAL SEQRES 7 D 153 ARG HIS VAL GLY ASP MET GLY ASN VAL LYS THR ASP GLU SEQRES 8 D 153 ASN GLY VAL ALA LYS GLY SER PHE LYS ASP SER LEU ILE SEQRES 9 D 153 LYS LEU ILE GLY PRO THR SER VAL VAL GLY ARG SER VAL SEQRES 10 D 153 VAL ILE HIS ALA GLY GLN ASP ASP LEU GLY LYS GLY ASP SEQRES 11 D 153 THR GLU GLU SER LEU LYS THR GLY ASN ALA GLY PRO ARG SEQRES 12 D 153 PRO ALA CYS GLY VAL ILE GLY LEU THR ASN HET CU A 152 1 HET ZN A 153 1 HET CU B 152 1 HET ZN B 153 1 HET CU C 152 1 HET ZN C 153 1 HET CU D 152 1 HET ZN D 153 1 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION FORMUL 5 CU 4(CU 2+) FORMUL 6 ZN 4(ZN 2+) FORMUL 13 HOH *513(H2 O) HELIX 1 HAA GLU A 130 THR A 135 1SEE REMARK 5 6 HELIX 2 HAB GLU B 130 THR B 135 1SEE REMARK 5 6 HELIX 3 HAC GLU C 130 THR C 135 1SEE REMARK 5 6 HELIX 4 HAD GLU D 130 THR D 135 1SEE REMARK 5 6 SHEET 1 BGA 4 GLN A 3 LEU A 8 0 SHEET 2 BGA 4 SER A 15 GLU A 21 -1 O PHE A 20 N ALA A 4 SHEET 3 BGA 4 THR A 27 GLY A 35 -1 O THR A 28 N GLU A 21 SHEET 4 BGA 4 ALA A 93 ASP A 99 -1 O PHE A 97 N VAL A 29 SHEET 1 SMA 5 ASP A 81 LYS A 86 0 SHEET 2 SMA 5 GLU A 40 HIS A 46 -1 O ARG A 41 N VAL A 85 SHEET 3 SMA 5 SER A 114 ILE A 117 -1 O VAL A 116 N HIS A 44 SHEET 4 SMA 5 ALA A 143 LEU A 149 -1 O GLY A 145 N VAL A 115 SHEET 5 SMA 5 GLN A 3 LEU A 8 -1 O VAL A 5 N GLY A 148 SHEET 1 BGB 4 GLN B 3 LEU B 8 0 SHEET 2 BGB 4 SER B 15 GLU B 21 -1 O PHE B 20 N ALA B 4 SHEET 3 BGB 4 THR B 27 GLY B 35 -1 O THR B 28 N GLU B 21 SHEET 4 BGB 4 ALA B 93 ASP B 99 -1 O PHE B 97 N VAL B 29 SHEET 1 SMB 5 ASP B 81 LYS B 86 0 SHEET 2 SMB 5 GLU B 40 HIS B 46 -1 O ARG B 41 N VAL B 85 SHEET 3 SMB 5 SER B 114 ILE B 117 -1 O VAL B 116 N HIS B 44 SHEET 4 SMB 5 ALA B 143 LEU B 149 -1 O GLY B 145 N VAL B 115 SHEET 5 SMB 5 GLN B 3 LEU B 8 -1 O VAL B 5 N GLY B 148 SHEET 1 BGC 4 GLN C 3 LEU C 8 0 SHEET 2 BGC 4 SER C 15 GLU C 21 -1 O PHE C 20 N ALA C 4 SHEET 3 BGC 4 THR C 27 GLY C 35 -1 O THR C 28 N GLU C 21 SHEET 4 BGC 4 ALA C 93 ASP C 99 -1 O PHE C 97 N VAL C 29 SHEET 1 SMC 5 ASP C 81 LYS C 86 0 SHEET 2 SMC 5 GLU C 40 HIS C 46 -1 O ARG C 41 N VAL C 85 SHEET 3 SMC 5 SER C 114 ILE C 117 -1 O VAL C 116 N HIS C 44 SHEET 4 SMC 5 ALA C 143 LEU C 149 -1 O GLY C 145 N VAL C 115 SHEET 5 SMC 5 GLN C 3 LEU C 8 -1 O VAL C 5 N GLY C 148 SHEET 1 BGD 4 GLN D 3 LEU D 8 0 SHEET 2 BGD 4 SER D 15 GLU D 21 -1 O PHE D 20 N ALA D 4 SHEET 3 BGD 4 THR D 27 GLY D 35 -1 O THR D 28 N GLU D 21 SHEET 4 BGD 4 ALA D 93 ASP D 99 -1 O PHE D 97 N VAL D 29 SHEET 1 SMD 5 ASP D 81 LYS D 86 0 SHEET 2 SMD 5 GLU D 40 HIS D 46 -1 O ARG D 41 N VAL D 85 SHEET 3 SMD 5 SER D 114 ILE D 117 -1 O VAL D 116 N HIS D 44 SHEET 4 SMD 5 ALA D 143 LEU D 149 -1 O GLY D 145 N VAL D 115 SHEET 5 SMD 5 GLN D 3 LEU D 8 -1 O VAL D 5 N GLY D 148 SSBOND 1 CYS A 55 CYS A 144 1555 1555 2.03 SSBOND 2 CYS B 55 CYS B 144 1555 1555 2.04 SSBOND 3 CYS C 55 CYS C 144 1555 1555 2.08 SSBOND 4 CYS D 55 CYS D 144 1555 1555 2.04 LINK CU CU A 152 O HOH A 154 1555 1555 1.86 LINK CU CU A 152 ND1 HIS A 44 1555 1555 1.85 LINK CU CU A 152 NE2 HIS A 61 1555 1555 2.44 LINK CU CU A 152 NE2 HIS A 46 1555 1555 2.17 LINK CU CU A 152 NE2 HIS A 118 1555 1555 2.24 LINK ZN ZN A 153 ND1 HIS A 78 1555 1555 2.03 LINK ZN ZN A 153 ND1 HIS A 61 1555 1555 1.94 LINK ZN ZN A 153 ND1 HIS A 69 1555 1555 1.90 LINK ZN ZN A 153 OD1 ASP A 81 1555 1555 1.85 LINK CU CU B 152 NE2 HIS B 61 1555 1555 2.08 LINK CU CU B 152 NE2 HIS B 46 1555 1555 2.28 LINK CU CU B 152 ND1 HIS B 44 1555 1555 1.87 LINK CU CU B 152 NE2 HIS B 118 1555 1555 2.01 LINK CU CU B 152 O HOH B 154 1555 1555 2.06 LINK ZN ZN B 153 ND1 HIS B 78 1555 1555 2.03 LINK ZN ZN B 153 ND1 HIS B 69 1555 1555 1.92 LINK ZN ZN B 153 ND1 HIS B 61 1555 1555 2.03 LINK ZN ZN B 153 OD1 ASP B 81 1555 1555 2.02 LINK CU CU C 152 ND1 HIS C 44 1555 1555 1.91 LINK CU CU C 152 NE2 HIS C 46 1555 1555 2.30 LINK CU CU C 152 O HOH C 154 1555 1555 1.83 LINK CU CU C 152 NE2 HIS C 118 1555 1555 2.14 LINK CU CU C 152 NE2 HIS C 61 1555 1555 2.00 LINK ZN ZN C 153 ND1 HIS C 61 1555 1555 2.20 LINK ZN ZN C 153 ND1 HIS C 78 1555 1555 1.91 LINK ZN ZN C 153 ND1 HIS C 69 1555 1555 1.93 LINK ZN ZN C 153 OD1 ASP C 81 1555 1555 2.06 LINK CU CU D 152 NE2 HIS D 46 1555 1555 2.14 LINK CU CU D 152 NE2 HIS D 118 1555 1555 2.26 LINK CU CU D 152 O HOH D 154 1555 1555 2.37 LINK CU CU D 152 NE2 HIS D 61 1555 1555 2.16 LINK CU CU D 152 ND1 HIS D 44 1555 1555 1.82 LINK ZN ZN D 153 ND1 HIS D 78 1555 1555 1.91 LINK ZN ZN D 153 OD1 ASP D 81 1555 1555 1.79 LINK ZN ZN D 153 ND1 HIS D 61 1555 1555 1.96 LINK ZN ZN D 153 ND1 HIS D 69 1555 1555 2.13 SITE 1 A 9 HIS A 44 HIS A 46 HIS A 61 HIS A 118 SITE 2 A 9 HIS A 69 HIS A 78 ASP A 81 CU A 152 SITE 3 A 9 ZN A 153 SITE 1 B 9 HIS B 44 HIS B 46 HIS B 61 HIS B 118 SITE 2 B 9 HIS B 69 HIS B 78 ASP B 81 CU B 152 SITE 3 B 9 ZN B 153 SITE 1 C 9 HIS C 44 HIS C 46 HIS C 61 HIS C 118 SITE 2 C 9 HIS C 69 HIS C 78 ASP C 81 CU C 152 SITE 3 C 9 ZN C 153 SITE 1 D 9 HIS D 44 HIS D 46 HIS D 61 HIS D 118 SITE 2 D 9 HIS D 69 HIS D 78 ASP D 81 CU D 152 SITE 3 D 9 ZN D 153 SITE 1 AC1 5 HIS A 44 HIS A 46 HIS A 61 HIS A 118 SITE 2 AC1 5 HOH A 154 SITE 1 AC2 4 HIS A 61 HIS A 69 HIS A 78 ASP A 81 SITE 1 AC3 5 HIS B 44 HIS B 46 HIS B 61 HIS B 118 SITE 2 AC3 5 HOH B 154 SITE 1 AC4 4 HIS B 61 HIS B 69 HIS B 78 ASP B 81 SITE 1 AC5 5 HIS C 44 HIS C 46 HIS C 61 HIS C 118 SITE 2 AC5 5 HOH C 154 SITE 1 AC6 4 HIS C 61 HIS C 69 HIS C 78 ASP C 81 SITE 1 AC7 5 HIS D 44 HIS D 46 HIS D 61 HIS D 118 SITE 2 AC7 5 HOH D 154 SITE 1 AC8 4 HIS D 61 HIS D 69 HIS D 78 ASP D 81 CRYST1 105.300 143.000 62.100 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009497 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016103 0.00000 MTRIX1 1 -0.608980 -0.793150 0.008050 66.12000 1 MTRIX2 1 -0.791750 0.608450 0.054010 32.64200 1 MTRIX3 1 -0.047740 0.026520 -0.998510 1.61800 1 MTRIX1 2 -0.982760 0.172050 -0.067710 12.74300 1 MTRIX2 2 0.147180 0.506310 -0.849700 31.96600 1 MTRIX3 2 -0.111910 -0.845020 -0.522900 59.01400 1