HEADER PLANT PROTEIN 16-FEB-04 1SE9 TITLE STRUCTURE OF AT3G01050, A UBIQUITIN-FOLD PROTEIN FROM ARABIDOPSIS TITLE 2 THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: AT3G01050 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT3G01050; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PEU-AT3G01050; SOURCE 9 OTHER_DETAILS: WHEAT GERM CELL-FREE, IN VITRO EXPRESSION KEYWDS UBIQUITIN-LIKE, CELL-FREE, WHEAT GERM, STRUCTURAL GENOMICS, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, CESG, PSI, CENTER FOR EUKARYOTIC STRUCTURAL KEYWDS 3 GENOMICS, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.F.VOLKMAN,B.L.LYTLE,F.C.PETERSON,CENTER FOR EUKARYOTIC STRUCTURAL AUTHOR 2 GENOMICS (CESG) REVDAT 8 02-MAR-22 1SE9 1 REMARK SEQADV REVDAT 7 24-FEB-09 1SE9 1 VERSN REVDAT 6 29-APR-08 1SE9 1 SOURCE REVDAT 5 12-FEB-08 1SE9 1 REMARK REVDAT 4 08-AUG-06 1SE9 1 JRNL REVDAT 3 01-FEB-05 1SE9 1 AUTHOR KEYWDS REMARK REVDAT 2 12-OCT-04 1SE9 1 KEYWDS REVDAT 1 24-FEB-04 1SE9 0 JRNL AUTH D.A.VINAROV,B.L.LYTLE,F.C.PETERSON,E.M.TYLER,B.F.VOLKMAN, JRNL AUTH 2 J.L.MARKLEY JRNL TITL CELL-FREE PROTEIN PRODUCTION AND LABELING PROTOCOL FOR JRNL TITL 2 NMR-BASED STRUCTURAL PROTEOMICS. JRNL REF NAT.METHODS V. 1 149 2004 JRNL REFN ISSN 1548-7091 JRNL PMID 15782178 JRNL DOI 10.1038/NMETH716 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.6, XPLOR-NIH 2.0.6 REMARK 3 AUTHORS : PETER GUENTERT (CYANA), MARIUS CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CANDID AUTOMATED REFINEMENT REMARK 3 CYANA REFINEMENT REMARK 3 XPLOR WATER REFINEMENT REMARK 4 REMARK 4 1SE9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000021635. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 MM NACL + 10 MM KPO4 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM U-15N,13C AT3G01050; 10MM REMARK 210 PHOSPHATE BUFFER, 50MM KCL, 1MM REMARK 210 DTT, PH 6.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D 13C- REMARK 210 SEPARATED NOESY-AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, NMRPIPE 2.1, XEASY REMARK 210 1.3.1, SPSCAN 1.1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS FOLLOWED REMARK 210 BY CARTESIAN MOLECULAR DYNAMICS REMARK 210 IN EXPLICIT SOLVENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: CHEMICAL SHIFT ASSIGNMENTS WERE OBTAINED FROM STANDARD 3D REMARK 210 TRIPLE-RESONANCE EXPERIMENTS, USING THE AUTOMATED METHOD OF REMARK 210 GARANT (CHRISTIAN BARTELS). REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -8 REMARK 465 GLY A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 LEU A 0 REMARK 465 LYS A 102 REMARK 465 PRO A 103 REMARK 465 LYS A 104 REMARK 465 GLY A 105 REMARK 465 ASP A 106 REMARK 465 PRO A 107 REMARK 465 LYS A 108 REMARK 465 MET A 109 REMARK 465 ASN A 110 REMARK 465 LYS A 111 REMARK 465 CYS A 112 REMARK 465 VAL A 113 REMARK 465 CYS A 114 REMARK 465 SER A 115 REMARK 465 VAL A 116 REMARK 465 MET A 117 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 70 OD1 ASP A 73 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 4 97.27 49.68 REMARK 500 1 GLN A 7 -168.74 -109.97 REMARK 500 1 ASN A 48 74.47 62.09 REMARK 500 1 PRO A 50 172.06 -55.47 REMARK 500 1 LYS A 51 -16.63 175.98 REMARK 500 1 PRO A 77 -177.63 -63.93 REMARK 500 1 THR A 97 84.86 57.07 REMARK 500 1 LYS A 99 109.56 -174.00 REMARK 500 1 GLU A 100 -94.10 38.64 REMARK 500 2 HIS A 5 -52.16 -135.55 REMARK 500 2 PRO A 50 94.39 -61.19 REMARK 500 2 LYS A 51 -64.60 -93.85 REMARK 500 2 GLU A 98 100.18 172.88 REMARK 500 3 GLU A 3 82.30 43.29 REMARK 500 3 LYS A 51 -35.48 -130.19 REMARK 500 3 GLU A 100 -93.31 -100.63 REMARK 500 4 ASN A 48 69.37 -62.68 REMARK 500 4 LYS A 51 -36.87 -168.36 REMARK 500 4 PRO A 77 136.39 -39.20 REMARK 500 4 VAL A 78 -3.99 74.75 REMARK 500 4 SER A 79 103.01 69.84 REMARK 500 5 ASN A 48 38.78 -70.47 REMARK 500 5 LYS A 51 -20.58 -148.84 REMARK 500 5 VAL A 78 89.14 49.29 REMARK 500 5 ASN A 80 -65.93 -97.00 REMARK 500 5 ALA A 82 91.27 63.57 REMARK 500 5 GLU A 98 99.11 -164.86 REMARK 500 5 LYS A 99 99.87 66.83 REMARK 500 6 GLU A 3 108.77 -43.07 REMARK 500 6 PRO A 43 117.51 -33.70 REMARK 500 6 PRO A 50 47.53 -72.24 REMARK 500 6 PRO A 77 107.92 -56.14 REMARK 500 6 VAL A 78 -75.91 -127.39 REMARK 500 6 LYS A 99 98.95 68.29 REMARK 500 7 ASN A 6 -31.92 179.40 REMARK 500 7 GLU A 47 -160.74 -70.99 REMARK 500 7 PRO A 50 -179.20 -58.61 REMARK 500 7 LYS A 51 -68.92 -167.31 REMARK 500 7 ALA A 82 129.32 -179.17 REMARK 500 7 GLU A 98 94.15 -67.09 REMARK 500 7 LYS A 99 81.28 177.83 REMARK 500 7 GLU A 100 -37.20 -146.12 REMARK 500 8 ALA A 2 120.37 68.36 REMARK 500 8 LYS A 51 -60.71 -159.43 REMARK 500 8 VAL A 78 109.18 58.64 REMARK 500 8 LYS A 99 115.23 72.98 REMARK 500 9 HIS A 5 -9.80 82.27 REMARK 500 9 GLN A 7 -100.39 -73.20 REMARK 500 9 PRO A 50 157.49 -43.70 REMARK 500 9 LYS A 51 -53.46 -135.61 REMARK 500 REMARK 500 THIS ENTRY HAS 115 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.15176 RELATED DB: TARGETDB DBREF 1SE9 A 2 117 UNP Q9MAB9 Y3105_ARATH 2 117 SEQADV 1SE9 MET A -8 UNP Q9MAB9 INSERTION SEQADV 1SE9 GLY A -7 UNP Q9MAB9 INSERTION SEQADV 1SE9 HIS A -6 UNP Q9MAB9 INSERTION SEQADV 1SE9 HIS A -5 UNP Q9MAB9 INSERTION SEQADV 1SE9 HIS A -4 UNP Q9MAB9 INSERTION SEQADV 1SE9 HIS A -3 UNP Q9MAB9 INSERTION SEQADV 1SE9 HIS A -2 UNP Q9MAB9 INSERTION SEQADV 1SE9 HIS A -1 UNP Q9MAB9 INSERTION SEQADV 1SE9 LEU A 0 UNP Q9MAB9 INSERTION SEQADV 1SE9 GLU A 1 UNP Q9MAB9 INSERTION SEQRES 1 A 126 MET GLY HIS HIS HIS HIS HIS HIS LEU GLU ALA GLU VAL SEQRES 2 A 126 HIS ASN GLN LEU GLU ILE LYS PHE ARG LEU THR ASP GLY SEQRES 3 A 126 SER ASP ILE GLY PRO LYS ALA PHE PRO ASP ALA THR THR SEQRES 4 A 126 VAL SER ALA LEU LYS GLU THR VAL ILE SER GLU TRP PRO SEQRES 5 A 126 ARG GLU LYS GLU ASN GLY PRO LYS THR VAL LYS GLU VAL SEQRES 6 A 126 LYS LEU ILE SER ALA GLY LYS VAL LEU GLU ASN SER LYS SEQRES 7 A 126 THR VAL LYS ASP TYR ARG SER PRO VAL SER ASN LEU ALA SEQRES 8 A 126 GLY ALA VAL THR THR MET HIS VAL ILE ILE GLN ALA PRO SEQRES 9 A 126 VAL THR GLU LYS GLU LYS LYS PRO LYS GLY ASP PRO LYS SEQRES 10 A 126 MET ASN LYS CYS VAL CYS SER VAL MET HELIX 1 1 THR A 30 TRP A 42 1 13 HELIX 2 2 THR A 52 LYS A 54 5 3 HELIX 3 3 THR A 70 ARG A 75 5 6 SHEET 1 A 5 ASP A 19 PHE A 25 0 SHEET 2 A 5 LEU A 8 LEU A 14 -1 N PHE A 12 O ILE A 20 SHEET 3 A 5 THR A 86 ILE A 92 1 O THR A 86 N GLU A 9 SHEET 4 A 5 VAL A 56 SER A 60 -1 N ILE A 59 O HIS A 89 SHEET 5 A 5 LYS A 63 VAL A 64 -1 O LYS A 63 N SER A 60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1