HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-FEB-04 1SF0 TITLE BACKBONE SOLUTION STRUCTURE OF MIXED ALPHA/BETA PROTEIN PF1061 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PF1061; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: DSM 3638; SOURCE 5 GENE: PF1061; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3STAR PRIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24D BAM KEYWDS RESIDUAL DIPOLAR COUPLINGS, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, SOUTHEAST COLLABORATORY FOR STRUCTURAL KEYWDS 3 GENOMICS, SECSG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR AUTHOR J.H.PRESTEGARD,K.L.MAYER,H.VALAFAR,SOUTHEAST COLLABORATORY FOR AUTHOR 2 STRUCTURAL GENOMICS (SECSG) REVDAT 5 13-JUL-11 1SF0 1 VERSN REVDAT 4 24-FEB-09 1SF0 1 VERSN REVDAT 3 08-MAR-05 1SF0 1 JRNL REVDAT 2 01-FEB-05 1SF0 1 AUTHOR KEYWDS REMARK REVDAT 1 13-APR-04 1SF0 0 JRNL AUTH H.VALAFAR,K.L.MAYER,C.M.BOUGAULT,P.D.LEBLOND,F.E.JENNEY, JRNL AUTH 2 P.S.BRERETON,M.W.ADAMS,J.H.PRESTEGARD JRNL TITL BACKBONE SOLUTION STRUCTURES OF PROTEINS USING RESIDUAL JRNL TITL 2 DIPOLAR COUPLINGS: APPLICATION TO A NOVEL STRUCTURAL JRNL TITL 3 GENOMICS TARGET. JRNL REF J.STRUCT.FUNCT.GENOM. V. 5 241 2005 JRNL REFN ISSN 1345-711X JRNL PMID 15704012 JRNL DOI 10.1007/S10969-005-4899-5 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.1 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RDCS WERE USED IN THE INITIAL ASSEMBLY REMARK 3 OF FOUR FRAGMENTS. RDCS FROM TWO MEDIA WERE USED TO SET RELATIVE REMARK 3 ORIENTATIONS OF THE FRAGMENTS. TRANSLATIONAL RELATIONSHIPS OF REMARK 3 FRAGMENTS WERE DICTATED BY SEQUENCE CONNECTIVITIES AND LONG-RANGE REMARK 3 NOES. THE ASSEMBLED STRUCTURE WAS MINIMIZED USING A MOLECULAR REMARK 3 FORCE FIELD AND RDC ERROR FUNCTION. A TOTAL OF 486 RESTRAINTS REMARK 3 WERE USED: 380 RESIDUAL DIPOLAR COUPLING RESTRAINTS, 85 NOE REMARK 3 RESTRAINTS (OF WHICH 64 WERE SEQUENTIAL, 11 SHORT-RANGE AND 10 REMARK 3 LONG-RANGE), AND 21 DIHEDRAL RESTRAINTS. ALL SIDECHAIN ATOMS REMARK 3 BEYOND CB ARE MISSING. REMARK 4 REMARK 4 1SF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-04. REMARK 100 THE RCSB ID CODE IS RCSB021650. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 300; 293 REMARK 210 PH : 5.5; 6; 6 REMARK 210 IONIC STRENGTH : 200 MM KCL; 100 MM KCL; 100 MM REMARK 210 KCL REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM 1016054 U-15N, 16% 13C 50 REMARK 210 MM PHOSPHATE BUFFER; 200 MM KCL; REMARK 210 90% H2O, 10% D2O;; 0.5 MM 1016054 REMARK 210 U-15N, 16% 13C; 50 MM PHOSPHATE REMARK 210 BUFFER; 100 MM KCL; PEG BICELLES REMARK 210 (C12E5-HEXANOL IN 0.98 RATIO); REMARK 210 90% H2O, 10% D2O;; 0.5 MM 1016054 REMARK 210 U-15N, 16% 13C; 50 MM PHOSPHATE REMARK 210 BUFFER; 100 MM KCL; PEG-CTAB (27: REMARK 210 1)BICELLES (C12E5-HEXANOL IN 0.87 REMARK 210 RATIO); 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SOFT HNCA-E.COSY; MODIFIED HNCO; REMARK 210 15N COUPLED HSQC; 3D_15N - REMARK 210 SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_TOCSY; SOFT HNCA- REMARK 210 E.COSY; MODIFIED HNCO; 15N REMARK 210 COUPLED HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 5.0.4, REDCRAFT 1.0, REMARK 210 REDCAT 1.0 REMARK 210 METHOD USED : RDC DIRECTED FRAGMENT ASSEMBLY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING PREDOMINANTLY RESIDUAL REMARK 210 DIPOLAR COUPLINGS FROM BACKBONE ATOM PAIRS. IT IS A BACKBONE REMARK 210 STRUCTURE MODELED AS AN ALA-GLY-PRO POLYPEPTIDE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 12 57.32 79.65 REMARK 500 GLU A 16 156.77 -36.43 REMARK 500 GLU A 18 -133.49 -72.02 REMARK 500 ARG A 20 -91.88 -140.65 REMARK 500 GLU A 21 118.90 157.74 REMARK 500 MET A 23 -167.60 -59.11 REMARK 500 LYS A 24 141.33 -173.39 REMARK 500 ASN A 35 47.68 -77.73 REMARK 500 SER A 38 55.97 -98.32 REMARK 500 ALA A 39 158.42 154.90 REMARK 500 GLU A 53 156.18 -39.20 REMARK 500 LYS A 55 -149.87 -149.20 REMARK 500 ASP A 56 30.77 31.40 REMARK 500 PHE A 59 -148.94 -81.81 REMARK 500 ILE A 63 149.30 152.29 REMARK 500 PRO A 64 84.87 -41.16 REMARK 500 VAL A 65 31.51 -92.48 REMARK 500 SER A 67 139.86 -174.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFU-1016054-001 RELATED DB: TARGETDB DBREF 1SF0 A 2 69 UNP Q8U1Z3 Q8U1Z3_PYRFU 4 71 SEQADV 1SF0 ALA A -7 UNP Q8U1Z3 CLONING ARTIFACT SEQADV 1SF0 HIS A -6 UNP Q8U1Z3 EXPRESSION TAG SEQADV 1SF0 HIS A -5 UNP Q8U1Z3 EXPRESSION TAG SEQADV 1SF0 HIS A -4 UNP Q8U1Z3 EXPRESSION TAG SEQADV 1SF0 HIS A -3 UNP Q8U1Z3 EXPRESSION TAG SEQADV 1SF0 HIS A -2 UNP Q8U1Z3 EXPRESSION TAG SEQADV 1SF0 HIS A -1 UNP Q8U1Z3 EXPRESSION TAG SEQADV 1SF0 GLY A 0 UNP Q8U1Z3 CLONING ARTIFACT SEQADV 1SF0 SER A 1 UNP Q8U1Z3 CLONING ARTIFACT SEQRES 1 A 77 ALA HIS HIS HIS HIS HIS HIS GLY SER LYS MET ILE LYS SEQRES 2 A 77 VAL LYS VAL ILE GLY ARG ASN ILE GLU LYS GLU ILE GLU SEQRES 3 A 77 TRP ARG GLU GLY MET LYS VAL ARG ASP ILE LEU ARG ALA SEQRES 4 A 77 VAL GLY PHE ASN THR GLU SER ALA ILE ALA LYS VAL ASN SEQRES 5 A 77 GLY LYS VAL VAL LEU GLU ASP ASP GLU VAL LYS ASP GLY SEQRES 6 A 77 ASP PHE VAL GLU VAL ILE PRO VAL VAL SER GLY GLY HELIX 1 1 LYS A 24 ALA A 31 1 8 SHEET 1 A 2 LYS A 5 LYS A 7 0 SHEET 2 A 2 PHE A 59 GLU A 61 1 O VAL A 60 N LYS A 5 SHEET 1 B 2 LYS A 42 VAL A 43 0 SHEET 2 B 2 LYS A 46 VAL A 47 -1 O LYS A 46 N VAL A 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000