HEADER ISOMERASE 20-SEP-96 1SFT TITLE ALANINE RACEMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE RACEMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 STRAIN: IFO 12550; SOURCE 5 GENE: ALR, DAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: XL-1 BLUE; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKK223-3; SOURCE 10 EXPRESSION_SYSTEM_GENE: ALR KEYWDS ALANINE, ISOMERASE, PYRIDOXAL PHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.SHAW,G.A.PETSKO,D.RINGE REVDAT 5 25-DEC-24 1SFT 1 COMPND SOURCE REMARK DBREF REVDAT 5 2 1 SEQRES HET HETNAM HETSYN REVDAT 5 3 1 FORMUL HELIX LINK SITE REVDAT 5 4 1 ATOM REVDAT 4 05-JUN-24 1SFT 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1SFT 1 VERSN REVDAT 2 24-FEB-09 1SFT 1 VERSN REVDAT 1 12-FEB-97 1SFT 0 JRNL AUTH J.P.SHAW,G.A.PETSKO,D.RINGE JRNL TITL DETERMINATION OF THE STRUCTURE OF ALANINE RACEMASE FROM JRNL TITL 2 BACILLUS STEAROTHERMOPHILUS AT 1.9-A RESOLUTION. JRNL REF BIOCHEMISTRY V. 36 1329 1997 JRNL REFN ISSN 0006-2960 JRNL PMID 9063881 JRNL DOI 10.1021/BI961856C REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.J.NEIDHART,M.D.DISTEFANO,K.TANIZAWA,K.SODA,C.T.WALSH, REMARK 1 AUTH 2 G.A.PETSKO REMARK 1 TITL X-RAY CRYSTALLOGRAPHIC STUDIES OF THE ALANINE-SPECIFIC REMARK 1 TITL 2 RACEMASE FROM BACILLUS STEAROTHERMOPHILUS. OVERPRODUCTION, REMARK 1 TITL 3 CRYSTALLIZATION, AND PRELIMINARY CHARACTERIZATION REMARK 1 REF J.BIOL.CHEM. V. 262 15323 1987 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.0 REMARK 3 NUMBER OF REFLECTIONS : 52379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6081 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 3.420 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.05 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.807 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SFT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-94 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : RIGAKU REMARK 200 DATA SCALING SOFTWARE : RIGAKU REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52379 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.29500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.56500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.56500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.29500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 384 REMARK 465 GLU A 385 REMARK 465 SER A 386 REMARK 465 SER A 387 REMARK 465 ALA A 388 REMARK 465 MET B 1 REMARK 465 GLY B 382 REMARK 465 ALA B 383 REMARK 465 GLY B 384 REMARK 465 GLU B 385 REMARK 465 SER B 386 REMARK 465 SER B 387 REMARK 465 ALA B 388 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 33 NE2 HIS A 33 CD2 -0.072 REMARK 500 HIS A 155 NE2 HIS A 155 CD2 -0.077 REMARK 500 HIS A 166 NE2 HIS A 166 CD2 -0.066 REMARK 500 HIS A 200 NE2 HIS A 200 CD2 -0.067 REMARK 500 HIS A 248 NE2 HIS A 248 CD2 -0.069 REMARK 500 HIS A 348 NE2 HIS A 348 CD2 -0.066 REMARK 500 HIS B 33 NE2 HIS B 33 CD2 -0.072 REMARK 500 HIS B 45 NE2 HIS B 45 CD2 -0.069 REMARK 500 HIS B 125 NE2 HIS B 125 CD2 -0.075 REMARK 500 HIS B 127 NE2 HIS B 127 CD2 -0.066 REMARK 500 HIS B 157 NE2 HIS B 157 CD2 -0.074 REMARK 500 HIS B 200 NE2 HIS B 200 CD2 -0.070 REMARK 500 HIS B 294 NE2 HIS B 294 CD2 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 6 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 TRP A 9 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP A 9 CE2 - CD2 - CG ANGL. DEV. = -7.7 DEGREES REMARK 500 TRP A 9 CG - CD2 - CE3 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 25 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A 25 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 25 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 61 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 VAL A 64 N - CA - CB ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 100 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 TRP A 110 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP A 110 CB - CG - CD1 ANGL. DEV. = -9.5 DEGREES REMARK 500 TRP A 110 CE2 - CD2 - CG ANGL. DEV. = -7.0 DEGREES REMARK 500 TRP A 110 CG - CD2 - CE3 ANGL. DEV. = 7.6 DEGREES REMARK 500 GLU A 112 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 GLU A 143 CA - CB - CG ANGL. DEV. = 18.3 DEGREES REMARK 500 ARG A 147 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 154 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 TYR A 164 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 184 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 TRP A 191 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 LEU A 192 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 ARG A 195 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 CYS A 201 CA - CB - SG ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 209 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 213 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 MET A 217 CG - SD - CE ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG A 219 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 250 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 TRP A 276 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TRP A 276 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP A 288 CD1 - CG - CD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TRP A 288 CE2 - CD2 - CG ANGL. DEV. = -7.3 DEGREES REMARK 500 TRP A 288 CG - CD2 - CE3 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 290 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 VAL A 307 N - CA - CB ANGL. DEV. = -15.4 DEGREES REMARK 500 MET A 316 CG - SD - CE ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 318 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 334 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 347 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 347 NE - CZ - NH2 ANGL. DEV. = -8.4 DEGREES REMARK 500 THR A 351 CA - CB - CG2 ANGL. DEV. = -10.5 DEGREES REMARK 500 TYR A 354 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 366 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 112 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 106 -3.22 -150.49 REMARK 500 SER A 119 68.29 -162.78 REMARK 500 ARG A 136 -82.63 -96.55 REMARK 500 CYS A 201 -39.71 -148.67 REMARK 500 PHE A 215 -125.25 56.63 REMARK 500 SER A 264 -174.23 54.52 REMARK 500 ALA A 267 59.85 26.93 REMARK 500 PRO A 322 96.52 -57.96 REMARK 500 LYS A 372 14.46 58.24 REMARK 500 PHE B 106 -7.82 -151.21 REMARK 500 ARG B 136 -85.67 -94.11 REMARK 500 ARG B 213 52.77 -98.37 REMARK 500 PHE B 215 -126.63 55.91 REMARK 500 SER B 264 -161.71 64.09 REMARK 500 THR B 273 -166.49 -115.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 362 0.10 SIDE CHAIN REMARK 500 TYR B 362 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 401 DBREF 1SFT A 1 388 UNP P10724 ALR_GEOSE 1 388 DBREF 1SFT B 1 388 UNP P10724 ALR_GEOSE 1 388 SEQADV 1SFT ALA A 383 UNP P10724 ARG 383 CONFLICT SEQADV 1SFT ALA B 383 UNP P10724 ARG 383 CONFLICT SEQRES 1 A 388 MET ASN ASP PHE HIS ARG ASP THR TRP ALA GLU VAL ASP SEQRES 2 A 388 LEU ASP ALA ILE TYR ASP ASN VAL GLU ASN LEU ARG ARG SEQRES 3 A 388 LEU LEU PRO ASP ASP THR HIS ILE MET ALA VAL VAL LLP SEQRES 4 A 388 ALA ASN ALA TYR GLY HIS GLY ASP VAL GLN VAL ALA ARG SEQRES 5 A 388 THR ALA LEU GLU ALA GLY ALA SER ARG LEU ALA VAL ALA SEQRES 6 A 388 PHE LEU ASP GLU ALA LEU ALA LEU ARG GLU LYS GLY ILE SEQRES 7 A 388 GLU ALA PRO ILE LEU VAL LEU GLY ALA SER ARG PRO ALA SEQRES 8 A 388 ASP ALA ALA LEU ALA ALA GLN GLN ARG ILE ALA LEU THR SEQRES 9 A 388 VAL PHE ARG SER ASP TRP LEU GLU GLU ALA SER ALA LEU SEQRES 10 A 388 TYR SER GLY PRO PHE PRO ILE HIS PHE HIS LEU LYS MET SEQRES 11 A 388 ASP THR GLY MET GLY ARG LEU GLY VAL LYS ASP GLU GLU SEQRES 12 A 388 GLU THR LYS ARG ILE VAL ALA LEU ILE GLU ARG HIS PRO SEQRES 13 A 388 HIS PHE VAL LEU GLU GLY LEU TYR THR HIS PHE ALA THR SEQRES 14 A 388 ALA ASP GLU VAL ASN THR ASP TYR PHE SER TYR GLN TYR SEQRES 15 A 388 THR ARG PHE LEU HIS MET LEU GLU TRP LEU PRO SER ARG SEQRES 16 A 388 PRO PRO LEU VAL HIS CYS ALA ASN SER ALA ALA SER LEU SEQRES 17 A 388 ARG PHE PRO ASP ARG THR PHE ASN MET VAL ARG PHE GLY SEQRES 18 A 388 ILE ALA MET TYR GLY LEU ALA PRO SER PRO GLY ILE LYS SEQRES 19 A 388 PRO LEU LEU PRO TYR PRO LEU LYS GLU ALA PHE SER LEU SEQRES 20 A 388 HIS SER ARG LEU VAL HIS VAL LYS LYS LEU GLN PRO GLY SEQRES 21 A 388 GLU LYS VAL SER TYR GLY ALA THR TYR THR ALA GLN THR SEQRES 22 A 388 GLU GLU TRP ILE GLY THR ILE PRO ILE GLY TYR ALA ASP SEQRES 23 A 388 GLY TRP LEU ARG ARG LEU GLN HIS PHE HIS VAL LEU VAL SEQRES 24 A 388 ASP GLY GLN LYS ALA PRO ILE VAL GLY ARG ILE CYS MET SEQRES 25 A 388 ASP GLN CYS MET ILE ARG LEU PRO GLY PRO LEU PRO VAL SEQRES 26 A 388 GLY THR LYS VAL THR LEU ILE GLY ARG GLN GLY ASP GLU SEQRES 27 A 388 VAL ILE SER ILE ASP ASP VAL ALA ARG HIS LEU GLU THR SEQRES 28 A 388 ILE ASN TYR GLU VAL PRO CYS THR ILE SER TYR ARG VAL SEQRES 29 A 388 PRO ARG ILE PHE PHE ARG HIS LYS ARG ILE MET GLU VAL SEQRES 30 A 388 ARG ASN ALA ILE GLY ALA GLY GLU SER SER ALA SEQRES 1 B 388 MET ASN ASP PHE HIS ARG ASP THR TRP ALA GLU VAL ASP SEQRES 2 B 388 LEU ASP ALA ILE TYR ASP ASN VAL GLU ASN LEU ARG ARG SEQRES 3 B 388 LEU LEU PRO ASP ASP THR HIS ILE MET ALA VAL VAL LLP SEQRES 4 B 388 ALA ASN ALA TYR GLY HIS GLY ASP VAL GLN VAL ALA ARG SEQRES 5 B 388 THR ALA LEU GLU ALA GLY ALA SER ARG LEU ALA VAL ALA SEQRES 6 B 388 PHE LEU ASP GLU ALA LEU ALA LEU ARG GLU LYS GLY ILE SEQRES 7 B 388 GLU ALA PRO ILE LEU VAL LEU GLY ALA SER ARG PRO ALA SEQRES 8 B 388 ASP ALA ALA LEU ALA ALA GLN GLN ARG ILE ALA LEU THR SEQRES 9 B 388 VAL PHE ARG SER ASP TRP LEU GLU GLU ALA SER ALA LEU SEQRES 10 B 388 TYR SER GLY PRO PHE PRO ILE HIS PHE HIS LEU LYS MET SEQRES 11 B 388 ASP THR GLY MET GLY ARG LEU GLY VAL LYS ASP GLU GLU SEQRES 12 B 388 GLU THR LYS ARG ILE VAL ALA LEU ILE GLU ARG HIS PRO SEQRES 13 B 388 HIS PHE VAL LEU GLU GLY LEU TYR THR HIS PHE ALA THR SEQRES 14 B 388 ALA ASP GLU VAL ASN THR ASP TYR PHE SER TYR GLN TYR SEQRES 15 B 388 THR ARG PHE LEU HIS MET LEU GLU TRP LEU PRO SER ARG SEQRES 16 B 388 PRO PRO LEU VAL HIS CYS ALA ASN SER ALA ALA SER LEU SEQRES 17 B 388 ARG PHE PRO ASP ARG THR PHE ASN MET VAL ARG PHE GLY SEQRES 18 B 388 ILE ALA MET TYR GLY LEU ALA PRO SER PRO GLY ILE LYS SEQRES 19 B 388 PRO LEU LEU PRO TYR PRO LEU LYS GLU ALA PHE SER LEU SEQRES 20 B 388 HIS SER ARG LEU VAL HIS VAL LYS LYS LEU GLN PRO GLY SEQRES 21 B 388 GLU LYS VAL SER TYR GLY ALA THR TYR THR ALA GLN THR SEQRES 22 B 388 GLU GLU TRP ILE GLY THR ILE PRO ILE GLY TYR ALA ASP SEQRES 23 B 388 GLY TRP LEU ARG ARG LEU GLN HIS PHE HIS VAL LEU VAL SEQRES 24 B 388 ASP GLY GLN LYS ALA PRO ILE VAL GLY ARG ILE CYS MET SEQRES 25 B 388 ASP GLN CYS MET ILE ARG LEU PRO GLY PRO LEU PRO VAL SEQRES 26 B 388 GLY THR LYS VAL THR LEU ILE GLY ARG GLN GLY ASP GLU SEQRES 27 B 388 VAL ILE SER ILE ASP ASP VAL ALA ARG HIS LEU GLU THR SEQRES 28 B 388 ILE ASN TYR GLU VAL PRO CYS THR ILE SER TYR ARG VAL SEQRES 29 B 388 PRO ARG ILE PHE PHE ARG HIS LYS ARG ILE MET GLU VAL SEQRES 30 B 388 ARG ASN ALA ILE GLY ALA GLY GLU SER SER ALA MODRES 1SFT LLP A 39 LYS MODIFIED RESIDUE MODRES 1SFT LLP B 39 LYS MODIFIED RESIDUE HET LLP A 39 24 HET LLP B 39 24 HET ACT A 401 4 HET ACT B 400 4 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM ACT ACETATE ION HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 HOH *206(H2 O) HELIX 1 1 LEU A 14 LEU A 27 1 14 HELIX 2 3 ASP A 47 ALA A 57 1 11 HELIX 3 4 LEU A 67 GLU A 75 1 9 HELIX 4 5 PRO A 90 GLN A 98 5 9 HELIX 5 6 SER A 108 SER A 115 1 8 HELIX 6 7 GLU A 142 ARG A 154 1 13 HELIX 7 8 ASP A 176 TRP A 191 1 16 HELIX 8 9 SER A 204 ARG A 209 1 6 HELIX 9 10 ILE A 222 TYR A 225 5 4 HELIX 10 11 LYS A 234 LEU A 236 5 3 HELIX 11 12 TYR A 265 ALA A 267 5 3 HELIX 12 13 TYR A 284 ASP A 286 5 3 HELIX 13 14 ARG A 290 HIS A 294 5 5 HELIX 14 15 ILE A 342 LEU A 349 1 8 HELIX 15 16 ASN A 353 THR A 359 5 7 HELIX 16 17 LEU B 14 LEU B 27 1 14 HELIX 17 19 ASP B 47 ALA B 57 1 11 HELIX 18 20 LEU B 67 LYS B 76 1 10 HELIX 19 21 PRO B 90 GLN B 98 5 9 HELIX 20 22 SER B 108 LEU B 117 1 10 HELIX 21 23 GLU B 142 GLU B 153 1 12 HELIX 22 24 ASP B 176 GLU B 190 1 15 HELIX 23 25 SER B 204 ARG B 209 1 6 HELIX 24 26 ILE B 222 TYR B 225 5 4 HELIX 25 27 LYS B 234 LEU B 236 5 3 HELIX 26 28 TYR B 265 ALA B 267 5 3 HELIX 27 29 TYR B 284 ASP B 286 5 3 HELIX 28 30 ARG B 290 HIS B 294 5 5 HELIX 29 31 ILE B 342 LEU B 349 1 8 HELIX 30 32 ASN B 353 THR B 359 1 7 SHEET 1 A 5 ARG A 373 ARG A 378 0 SHEET 2 A 5 PRO A 365 ARG A 370 -1 N ARG A 370 O ARG A 373 SHEET 3 A 5 THR A 8 ASP A 13 1 N ALA A 10 O PRO A 365 SHEET 4 A 5 PHE A 245 ARG A 250 -1 N HIS A 248 O TRP A 9 SHEET 5 A 5 LYS A 328 ILE A 332 -1 N ILE A 332 O LEU A 247 SHEET 1 B 8 MET A 217 PHE A 220 0 SHEET 2 B 8 HIS A 33 VAL A 37 1 N HIS A 33 O VAL A 218 SHEET 3 B 8 ARG A 61 VAL A 64 1 N ARG A 61 O ALA A 36 SHEET 4 B 8 PRO A 81 VAL A 84 1 N PRO A 81 O LEU A 62 SHEET 5 B 8 ILE A 101 VAL A 105 1 N ALA A 102 O ILE A 82 SHEET 6 B 8 ILE A 124 LYS A 129 1 N HIS A 127 O LEU A 103 SHEET 7 B 8 PHE A 158 TYR A 164 1 N VAL A 159 O ILE A 124 SHEET 8 B 8 LEU A 198 HIS A 200 1 N LEU A 198 O LEU A 163 SHEET 1 C 3 CYS A 315 ARG A 318 0 SHEET 2 C 3 GLU A 275 ILE A 280 -1 N ILE A 280 O CYS A 315 SHEET 3 C 3 LEU A 251 LEU A 257 -1 N LEU A 257 O GLU A 275 SHEET 1 D 2 HIS A 296 VAL A 299 0 SHEET 2 D 2 GLN A 302 PRO A 305 -1 N ALA A 304 O VAL A 297 SHEET 1 E 2 GLY A 333 GLN A 335 0 SHEET 2 E 2 GLU A 338 ILE A 340 -1 N ILE A 340 O GLY A 333 SHEET 1 F 5 ARG B 373 ARG B 378 0 SHEET 2 F 5 PRO B 365 ARG B 370 -1 N ARG B 370 O ARG B 373 SHEET 3 F 5 THR B 8 ASP B 13 1 N ALA B 10 O PRO B 365 SHEET 4 F 5 PHE B 245 ARG B 250 -1 N HIS B 248 O TRP B 9 SHEET 5 F 5 LYS B 328 ILE B 332 -1 N ILE B 332 O LEU B 247 SHEET 1 G 8 MET B 217 PHE B 220 0 SHEET 2 G 8 HIS B 33 VAL B 37 1 N HIS B 33 O VAL B 218 SHEET 3 G 8 ARG B 61 VAL B 64 1 N ARG B 61 O ALA B 36 SHEET 4 G 8 PRO B 81 VAL B 84 1 N PRO B 81 O LEU B 62 SHEET 5 G 8 ILE B 101 VAL B 105 1 N ALA B 102 O ILE B 82 SHEET 6 G 8 ILE B 124 LYS B 129 1 N HIS B 127 O LEU B 103 SHEET 7 G 8 PHE B 158 TYR B 164 1 N VAL B 159 O ILE B 124 SHEET 8 G 8 LEU B 198 HIS B 200 1 N LEU B 198 O LEU B 163 SHEET 1 H 3 CYS B 315 ARG B 318 0 SHEET 2 H 3 GLU B 275 ILE B 280 -1 N ILE B 280 O CYS B 315 SHEET 3 H 3 LEU B 251 LEU B 257 -1 N LEU B 257 O GLU B 275 SHEET 1 I 2 HIS B 296 VAL B 299 0 SHEET 2 I 2 GLN B 302 PRO B 305 -1 N ALA B 304 O VAL B 297 SHEET 1 J 2 GLY B 333 GLN B 335 0 SHEET 2 J 2 GLU B 338 ILE B 340 -1 N ILE B 340 O GLY B 333 LINK C VAL A 38 N LLP A 39 1555 1555 1.35 LINK C LLP A 39 N ALA A 40 1555 1555 1.34 LINK C VAL B 38 N LLP B 39 1555 1555 1.33 LINK C LLP B 39 N ALA B 40 1555 1555 1.33 CISPEP 1 GLY A 120 PRO A 121 0 8.63 CISPEP 2 GLY B 120 PRO B 121 0 0.41 SITE 1 AC1 5 ARG A 136 TYR B 265 CYS B 311 MET B 312 SITE 2 AC1 5 HOH B 454 SITE 1 AC2 7 TYR A 265 TYR A 284 CYS A 311 MET A 312 SITE 2 AC2 7 HOH A 408 HOH A 473 ARG B 136 CRYST1 98.590 90.130 85.130 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010143 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011747 0.00000 MTRIX1 1 -0.871700 0.146600 -0.467600 75.61710 1 MTRIX2 1 0.146300 -0.832800 -0.533900 94.29770 1 MTRIX3 1 -0.467700 -0.533800 0.704500 50.26740 1