HEADER LYASE 23-FEB-04 1SGJ TITLE CRYSTAL STRUCTURE OF CITRATE LYASE BETA SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CITRATE LYASE, BETA SUBUNIT; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CITRATE LYASE BETA SUBUNIT, TRIMER, TIM BARREL, STRUCTURAL GENOMICS, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, NYSGXRC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ESWARAMOORTHY,S.SWAMINATHAN,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 14-FEB-24 1SGJ 1 REMARK REVDAT 4 03-FEB-21 1SGJ 1 AUTHOR REMARK LINK REVDAT 3 24-FEB-09 1SGJ 1 VERSN REVDAT 2 25-JAN-05 1SGJ 1 AUTHOR KEYWDS REMARK REVDAT 1 17-AUG-04 1SGJ 0 JRNL AUTH S.ESWARAMOORTHY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF CITRATE LYASE BETA SUBUNIT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 500.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.2 REMARK 3 NUMBER OF REFLECTIONS : 76873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2318 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5163 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 546 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.330 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000021690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-03; 16-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X12C; X12C REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1; 0.97888, 0.97933, 0.9300 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B4; BRANDEIS - B4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, MARMAD REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82199 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM CACODYLATE, AMMONIUM REMARK 280 SULFATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 235 REMARK 465 THR A 236 REMARK 465 GLU A 237 REMARK 465 ALA A 238 REMARK 465 ASP A 239 REMARK 465 ARG A 240 REMARK 465 ALA A 241 REMARK 465 ARG A 242 REMARK 465 ALA A 243 REMARK 465 ARG A 244 REMARK 465 ALA A 245 REMARK 465 LEU A 246 REMARK 465 LEU A 247 REMARK 465 ASP A 248 REMARK 465 ALA A 249 REMARK 465 ALA A 250 REMARK 465 ALA A 251 REMARK 465 ALA A 252 REMARK 465 ALA A 253 REMARK 465 ALA A 254 REMARK 465 GLN A 255 REMARK 465 ARG A 256 REMARK 465 GLY A 257 REMARK 465 HIS A 258 REMARK 465 GLY A 259 REMARK 465 ALA A 260 REMARK 465 PHE A 261 REMARK 465 SER A 262 REMARK 465 PHE A 263 REMARK 465 GLU A 264 REMARK 465 GLY A 265 REMARK 465 GLN A 266 REMARK 465 MET A 267 REMARK 465 VAL A 268 REMARK 465 ASP A 269 REMARK 465 GLU A 270 REMARK 465 PRO A 271 REMARK 465 MET A 272 REMARK 465 LEU A 273 REMARK 465 ALA A 274 REMARK 465 LYS A 275 REMARK 465 ALA A 276 REMARK 465 ARG A 277 REMARK 465 THR A 278 REMARK 465 LEU A 279 REMARK 465 LEU A 280 REMARK 465 SER A 281 REMARK 465 HIS A 282 REMARK 465 GLU A 283 REMARK 465 ALA A 284 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ALA B 3 REMARK 465 PRO B 235 REMARK 465 THR B 236 REMARK 465 GLU B 237 REMARK 465 ALA B 238 REMARK 465 ASP B 239 REMARK 465 ARG B 240 REMARK 465 ALA B 241 REMARK 465 ARG B 242 REMARK 465 ALA B 243 REMARK 465 ARG B 244 REMARK 465 ALA B 245 REMARK 465 LEU B 246 REMARK 465 LEU B 247 REMARK 465 ASP B 248 REMARK 465 ALA B 249 REMARK 465 ALA B 250 REMARK 465 ALA B 251 REMARK 465 ALA B 252 REMARK 465 ALA B 253 REMARK 465 ALA B 254 REMARK 465 GLN B 255 REMARK 465 ARG B 256 REMARK 465 GLY B 257 REMARK 465 HIS B 258 REMARK 465 GLY B 259 REMARK 465 ALA B 260 REMARK 465 PHE B 261 REMARK 465 SER B 262 REMARK 465 PHE B 263 REMARK 465 GLU B 264 REMARK 465 GLY B 265 REMARK 465 GLN B 266 REMARK 465 MET B 267 REMARK 465 VAL B 268 REMARK 465 ASP B 269 REMARK 465 GLU B 270 REMARK 465 PRO B 271 REMARK 465 MET B 272 REMARK 465 LEU B 273 REMARK 465 ALA B 274 REMARK 465 LYS B 275 REMARK 465 ALA B 276 REMARK 465 ARG B 277 REMARK 465 THR B 278 REMARK 465 LEU B 279 REMARK 465 LEU B 280 REMARK 465 SER B 281 REMARK 465 HIS B 282 REMARK 465 GLU B 283 REMARK 465 ALA B 284 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 ALA C 3 REMARK 465 PRO C 235 REMARK 465 THR C 236 REMARK 465 GLU C 237 REMARK 465 ALA C 238 REMARK 465 ASP C 239 REMARK 465 ARG C 240 REMARK 465 ALA C 241 REMARK 465 ARG C 242 REMARK 465 ALA C 243 REMARK 465 ARG C 244 REMARK 465 ALA C 245 REMARK 465 LEU C 246 REMARK 465 LEU C 247 REMARK 465 ASP C 248 REMARK 465 ALA C 249 REMARK 465 ALA C 250 REMARK 465 ALA C 251 REMARK 465 ALA C 252 REMARK 465 ALA C 253 REMARK 465 ALA C 254 REMARK 465 GLN C 255 REMARK 465 ARG C 256 REMARK 465 GLY C 257 REMARK 465 HIS C 258 REMARK 465 GLY C 259 REMARK 465 ALA C 260 REMARK 465 PHE C 261 REMARK 465 SER C 262 REMARK 465 PHE C 263 REMARK 465 GLU C 264 REMARK 465 GLY C 265 REMARK 465 GLN C 266 REMARK 465 MET C 267 REMARK 465 VAL C 268 REMARK 465 ASP C 269 REMARK 465 GLU C 270 REMARK 465 PRO C 271 REMARK 465 MET C 272 REMARK 465 LEU C 273 REMARK 465 ALA C 274 REMARK 465 LYS C 275 REMARK 465 ALA C 276 REMARK 465 ARG C 277 REMARK 465 THR C 278 REMARK 465 LEU C 279 REMARK 465 LEU C 280 REMARK 465 SER C 281 REMARK 465 HIS C 282 REMARK 465 GLU C 283 REMARK 465 ALA C 284 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 38 -110.16 -87.46 REMARK 500 PRO A 121 96.39 -66.65 REMARK 500 GLU A 129 34.79 -146.43 REMARK 500 GLU B 38 -108.18 -87.71 REMARK 500 PRO B 42 154.13 -48.10 REMARK 500 GLU B 129 36.14 -147.89 REMARK 500 GLU C 38 -102.59 -89.47 REMARK 500 GLU C 129 34.07 -146.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 286 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 74 NH1 REMARK 620 2 GLU A 129 OE1 117.4 REMARK 620 3 OAA A 285 O5 88.8 120.3 REMARK 620 4 OAA A 285 O3 55.9 172.4 65.2 REMARK 620 5 HOH A 287 O 84.4 63.1 173.2 110.8 REMARK 620 6 HOH A 288 O 173.5 58.8 89.0 128.2 97.7 REMARK 620 7 HOH A 356 O 50.9 67.0 120.5 105.9 54.3 125.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 286 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 74 NH1 REMARK 620 2 GLU B 129 OE1 125.9 REMARK 620 3 OAA B 285 O5 93.5 120.0 REMARK 620 4 OAA B 285 O3 59.9 171.2 63.4 REMARK 620 5 HOH B 576 O 85.1 64.9 174.2 111.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 286 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG C 74 NH1 REMARK 620 2 GLU C 129 OE1 116.5 REMARK 620 3 OAA C 285 O3 61.1 167.0 REMARK 620 4 OAA C 285 O5 97.3 102.2 66.5 REMARK 620 5 HOH C 578 O 82.3 64.4 125.6 164.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OAA A 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OAA B 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OAA C 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 286 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T1506 RELATED DB: TARGETDB DBREF 1SGJ A 1 284 UNP Q9RUZ0 Q9RUZ0_DEIRA 1 284 DBREF 1SGJ B 1 284 UNP Q9RUZ0 Q9RUZ0_DEIRA 1 284 DBREF 1SGJ C 1 284 UNP Q9RUZ0 Q9RUZ0_DEIRA 1 284 SEQRES 1 A 284 MET ASN ALA PRO PRO ALA LEU LEU ARG SER VAL LEU PHE SEQRES 2 A 284 ALA PRO GLY ASN ARG ALA ASP LEU ILE ALA LYS LEU PRO SEQRES 3 A 284 ARG SER ALA PRO ASP ALA VAL VAL ILE ASP LEU GLU ASP SEQRES 4 A 284 ALA VAL PRO GLY THR ALA GLU ALA LYS ALA ALA ALA ARG SEQRES 5 A 284 PRO VAL ALA HIS ASP ALA ALA ARG ASP LEU ILE ALA ALA SEQRES 6 A 284 ALA PRO HIS LEU ALA VAL PHE VAL ARG VAL ASN ALA LEU SEQRES 7 A 284 HIS SER PRO TYR PHE GLU ASP ASP LEU SER VAL LEU THR SEQRES 8 A 284 PRO GLU LEU SER GLY VAL VAL VAL PRO LYS LEU GLU MET SEQRES 9 A 284 GLY ALA GLU ALA ARG GLN VAL ALA GLN MET LEU GLN GLU SEQRES 10 A 284 ARG SER LEU PRO LEU PRO ILE LEU ALA GLY LEU GLU THR SEQRES 11 A 284 GLY ALA GLY VAL TRP ASN ALA ARG GLU ILE MET GLU VAL SEQRES 12 A 284 PRO GLU VAL ALA TRP ALA TYR PHE GLY ALA GLU ASP TYR SEQRES 13 A 284 THR THR ASP LEU GLY GLY LYS ARG THR PRO GLY GLY LEU SEQRES 14 A 284 GLU VAL LEU TYR ALA ARG SER GLN VAL ALA LEU ALA ALA SEQRES 15 A 284 ARG LEU THR GLY VAL ALA ALA LEU ASP ILE VAL VAL THR SEQRES 16 A 284 ALA LEU ASN ASP PRO GLU THR PHE ARG ALA ASP ALA GLU SEQRES 17 A 284 GLN GLY ARG ALA LEU GLY TYR SER GLY LYS LEU CYS ILE SEQRES 18 A 284 HIS PRO ALA GLN VAL ALA LEU ALA HIS GLU TYR PHE GLY SEQRES 19 A 284 PRO THR GLU ALA ASP ARG ALA ARG ALA ARG ALA LEU LEU SEQRES 20 A 284 ASP ALA ALA ALA ALA ALA ALA GLN ARG GLY HIS GLY ALA SEQRES 21 A 284 PHE SER PHE GLU GLY GLN MET VAL ASP GLU PRO MET LEU SEQRES 22 A 284 ALA LYS ALA ARG THR LEU LEU SER HIS GLU ALA SEQRES 1 B 284 MET ASN ALA PRO PRO ALA LEU LEU ARG SER VAL LEU PHE SEQRES 2 B 284 ALA PRO GLY ASN ARG ALA ASP LEU ILE ALA LYS LEU PRO SEQRES 3 B 284 ARG SER ALA PRO ASP ALA VAL VAL ILE ASP LEU GLU ASP SEQRES 4 B 284 ALA VAL PRO GLY THR ALA GLU ALA LYS ALA ALA ALA ARG SEQRES 5 B 284 PRO VAL ALA HIS ASP ALA ALA ARG ASP LEU ILE ALA ALA SEQRES 6 B 284 ALA PRO HIS LEU ALA VAL PHE VAL ARG VAL ASN ALA LEU SEQRES 7 B 284 HIS SER PRO TYR PHE GLU ASP ASP LEU SER VAL LEU THR SEQRES 8 B 284 PRO GLU LEU SER GLY VAL VAL VAL PRO LYS LEU GLU MET SEQRES 9 B 284 GLY ALA GLU ALA ARG GLN VAL ALA GLN MET LEU GLN GLU SEQRES 10 B 284 ARG SER LEU PRO LEU PRO ILE LEU ALA GLY LEU GLU THR SEQRES 11 B 284 GLY ALA GLY VAL TRP ASN ALA ARG GLU ILE MET GLU VAL SEQRES 12 B 284 PRO GLU VAL ALA TRP ALA TYR PHE GLY ALA GLU ASP TYR SEQRES 13 B 284 THR THR ASP LEU GLY GLY LYS ARG THR PRO GLY GLY LEU SEQRES 14 B 284 GLU VAL LEU TYR ALA ARG SER GLN VAL ALA LEU ALA ALA SEQRES 15 B 284 ARG LEU THR GLY VAL ALA ALA LEU ASP ILE VAL VAL THR SEQRES 16 B 284 ALA LEU ASN ASP PRO GLU THR PHE ARG ALA ASP ALA GLU SEQRES 17 B 284 GLN GLY ARG ALA LEU GLY TYR SER GLY LYS LEU CYS ILE SEQRES 18 B 284 HIS PRO ALA GLN VAL ALA LEU ALA HIS GLU TYR PHE GLY SEQRES 19 B 284 PRO THR GLU ALA ASP ARG ALA ARG ALA ARG ALA LEU LEU SEQRES 20 B 284 ASP ALA ALA ALA ALA ALA ALA GLN ARG GLY HIS GLY ALA SEQRES 21 B 284 PHE SER PHE GLU GLY GLN MET VAL ASP GLU PRO MET LEU SEQRES 22 B 284 ALA LYS ALA ARG THR LEU LEU SER HIS GLU ALA SEQRES 1 C 284 MET ASN ALA PRO PRO ALA LEU LEU ARG SER VAL LEU PHE SEQRES 2 C 284 ALA PRO GLY ASN ARG ALA ASP LEU ILE ALA LYS LEU PRO SEQRES 3 C 284 ARG SER ALA PRO ASP ALA VAL VAL ILE ASP LEU GLU ASP SEQRES 4 C 284 ALA VAL PRO GLY THR ALA GLU ALA LYS ALA ALA ALA ARG SEQRES 5 C 284 PRO VAL ALA HIS ASP ALA ALA ARG ASP LEU ILE ALA ALA SEQRES 6 C 284 ALA PRO HIS LEU ALA VAL PHE VAL ARG VAL ASN ALA LEU SEQRES 7 C 284 HIS SER PRO TYR PHE GLU ASP ASP LEU SER VAL LEU THR SEQRES 8 C 284 PRO GLU LEU SER GLY VAL VAL VAL PRO LYS LEU GLU MET SEQRES 9 C 284 GLY ALA GLU ALA ARG GLN VAL ALA GLN MET LEU GLN GLU SEQRES 10 C 284 ARG SER LEU PRO LEU PRO ILE LEU ALA GLY LEU GLU THR SEQRES 11 C 284 GLY ALA GLY VAL TRP ASN ALA ARG GLU ILE MET GLU VAL SEQRES 12 C 284 PRO GLU VAL ALA TRP ALA TYR PHE GLY ALA GLU ASP TYR SEQRES 13 C 284 THR THR ASP LEU GLY GLY LYS ARG THR PRO GLY GLY LEU SEQRES 14 C 284 GLU VAL LEU TYR ALA ARG SER GLN VAL ALA LEU ALA ALA SEQRES 15 C 284 ARG LEU THR GLY VAL ALA ALA LEU ASP ILE VAL VAL THR SEQRES 16 C 284 ALA LEU ASN ASP PRO GLU THR PHE ARG ALA ASP ALA GLU SEQRES 17 C 284 GLN GLY ARG ALA LEU GLY TYR SER GLY LYS LEU CYS ILE SEQRES 18 C 284 HIS PRO ALA GLN VAL ALA LEU ALA HIS GLU TYR PHE GLY SEQRES 19 C 284 PRO THR GLU ALA ASP ARG ALA ARG ALA ARG ALA LEU LEU SEQRES 20 C 284 ASP ALA ALA ALA ALA ALA ALA GLN ARG GLY HIS GLY ALA SEQRES 21 C 284 PHE SER PHE GLU GLY GLN MET VAL ASP GLU PRO MET LEU SEQRES 22 C 284 ALA LYS ALA ARG THR LEU LEU SER HIS GLU ALA HET OAA A 285 9 HET MG A 286 1 HET OAA B 285 9 HET MG B 286 1 HET OAA C 285 9 HET MG C 286 1 HETNAM OAA OXALOACETATE ION HETNAM MG MAGNESIUM ION FORMUL 4 OAA 3(C4 H3 O5 1-) FORMUL 5 MG 3(MG 2+) FORMUL 10 HOH *546(H2 O) HELIX 1 1 ARG A 18 LEU A 25 1 8 HELIX 2 2 THR A 44 ALA A 66 1 23 HELIX 3 3 TYR A 82 LEU A 87 1 6 HELIX 4 4 SER A 88 LEU A 90 5 3 HELIX 5 5 MET A 104 ARG A 118 1 15 HELIX 6 6 THR A 130 ASN A 136 1 7 HELIX 7 7 ASN A 136 GLU A 142 1 7 HELIX 8 8 GLY A 152 GLY A 161 1 10 HELIX 9 9 GLY A 168 GLU A 170 5 3 HELIX 10 10 VAL A 171 GLY A 186 1 16 HELIX 11 11 ASP A 199 LEU A 213 1 15 HELIX 12 12 HIS A 222 GLU A 231 1 10 HELIX 13 13 ARG B 18 LEU B 25 1 8 HELIX 14 14 PRO B 26 ALA B 29 5 4 HELIX 15 15 THR B 44 ALA B 66 1 23 HELIX 16 16 TYR B 82 LEU B 87 1 6 HELIX 17 17 SER B 88 LEU B 90 5 3 HELIX 18 18 MET B 104 ARG B 118 1 15 HELIX 19 19 THR B 130 ASN B 136 1 7 HELIX 20 20 ASN B 136 GLU B 142 1 7 HELIX 21 21 GLY B 152 GLY B 161 1 10 HELIX 22 22 GLY B 168 GLU B 170 5 3 HELIX 23 23 VAL B 171 GLY B 186 1 16 HELIX 24 24 ASP B 199 LEU B 213 1 15 HELIX 25 25 HIS B 222 PHE B 233 1 12 HELIX 26 26 ARG C 18 LEU C 25 1 8 HELIX 27 27 PRO C 26 ALA C 29 5 4 HELIX 28 28 THR C 44 ALA C 50 1 7 HELIX 29 29 ALA C 50 ALA C 66 1 17 HELIX 30 30 TYR C 82 SER C 88 1 7 HELIX 31 31 MET C 104 ARG C 118 1 15 HELIX 32 32 THR C 130 ASN C 136 1 7 HELIX 33 33 ASN C 136 GLU C 142 1 7 HELIX 34 34 GLY C 152 GLY C 161 1 10 HELIX 35 35 GLY C 168 GLU C 170 5 3 HELIX 36 36 VAL C 171 GLY C 186 1 16 HELIX 37 37 ASP C 199 LEU C 213 1 15 HELIX 38 38 HIS C 222 PHE C 233 1 12 SHEET 1 A 9 SER A 10 PRO A 15 0 SHEET 2 A 9 ALA A 32 ASP A 36 1 O VAL A 34 N LEU A 12 SHEET 3 A 9 ALA A 70 ARG A 74 1 O PHE A 72 N ILE A 35 SHEET 4 A 9 GLY A 96 VAL A 99 1 O VAL A 98 N VAL A 73 SHEET 5 A 9 ILE A 124 LEU A 128 1 O GLY A 127 N VAL A 99 SHEET 6 A 9 VAL A 146 PHE A 151 1 O TYR A 150 N LEU A 128 SHEET 7 A 9 ALA A 188 ASP A 191 1 O LEU A 190 N ALA A 149 SHEET 8 A 9 GLY A 217 CYS A 220 1 O GLY A 217 N ASP A 191 SHEET 9 A 9 SER A 10 PRO A 15 1 N VAL A 11 O CYS A 220 SHEET 1 B 9 SER B 10 PRO B 15 0 SHEET 2 B 9 ALA B 32 ASP B 36 1 O ASP B 36 N ALA B 14 SHEET 3 B 9 ALA B 70 ARG B 74 1 O PHE B 72 N VAL B 33 SHEET 4 B 9 GLY B 96 VAL B 99 1 O VAL B 98 N VAL B 73 SHEET 5 B 9 ILE B 124 LEU B 128 1 O GLY B 127 N VAL B 99 SHEET 6 B 9 VAL B 146 PHE B 151 1 O TYR B 150 N LEU B 128 SHEET 7 B 9 ALA B 188 ASP B 191 1 O LEU B 190 N ALA B 149 SHEET 8 B 9 GLY B 217 CYS B 220 1 O GLY B 217 N ASP B 191 SHEET 9 B 9 SER B 10 PRO B 15 1 N VAL B 11 O CYS B 220 SHEET 1 C 9 SER C 10 PRO C 15 0 SHEET 2 C 9 ALA C 32 ASP C 36 1 O VAL C 34 N LEU C 12 SHEET 3 C 9 ALA C 70 ARG C 74 1 O PHE C 72 N ILE C 35 SHEET 4 C 9 GLY C 96 VAL C 99 1 O VAL C 98 N VAL C 73 SHEET 5 C 9 ILE C 124 LEU C 128 1 O GLY C 127 N VAL C 99 SHEET 6 C 9 VAL C 146 PHE C 151 1 O TYR C 150 N LEU C 128 SHEET 7 C 9 ALA C 188 ASP C 191 1 O LEU C 190 N ALA C 149 SHEET 8 C 9 GLY C 217 CYS C 220 1 O GLY C 217 N ASP C 191 SHEET 9 C 9 SER C 10 PRO C 15 1 N VAL C 11 O CYS C 220 LINK NH1 ARG A 74 MG MG A 286 1555 1555 3.10 LINK OE1 GLU A 129 MG MG A 286 1555 1555 2.41 LINK O5 OAA A 285 MG MG A 286 1555 1555 1.78 LINK O3 OAA A 285 MG MG A 286 1555 1555 2.75 LINK MG MG A 286 O HOH A 287 1555 1555 3.08 LINK MG MG A 286 O HOH A 288 1555 1555 3.11 LINK MG MG A 286 O HOH A 356 1555 1555 2.08 LINK NH1 ARG B 74 MG MG B 286 1555 1555 2.92 LINK OE1 GLU B 129 MG MG B 286 1555 1555 2.40 LINK O5 OAA B 285 MG MG B 286 1555 1555 1.86 LINK O3 OAA B 285 MG MG B 286 1555 1555 2.80 LINK MG MG B 286 O HOH B 576 1555 1555 2.90 LINK NH1 ARG C 74 MG MG C 286 1555 1555 2.84 LINK OE1 GLU C 129 MG MG C 286 1555 1555 2.62 LINK O3 OAA C 285 MG MG C 286 1555 1555 2.56 LINK O5 OAA C 285 MG MG C 286 1555 1555 2.06 LINK MG MG C 286 O HOH C 578 1555 1555 3.04 SITE 1 AC1 11 ASP A 39 ARG A 74 GLU A 129 TYR A 150 SITE 2 AC1 11 VAL A 193 LEU A 219 ILE A 221 MG A 286 SITE 3 AC1 11 HOH A 362 HOH A 456 HOH A 470 SITE 1 AC2 5 ARG A 74 GLU A 129 OAA A 285 HOH A 287 SITE 2 AC2 5 HOH A 356 SITE 1 AC3 8 ARG B 74 GLU B 129 VAL B 193 LEU B 219 SITE 2 AC3 8 ILE B 221 MG B 286 HOH B 585 HOH B 813 SITE 1 AC4 5 ARG B 74 GLU B 129 TYR B 150 OAA B 285 SITE 2 AC4 5 HOH B 576 SITE 1 AC5 8 ARG C 74 GLU C 129 TYR C 150 VAL C 193 SITE 2 AC5 8 ILE C 221 MG C 286 HOH C 677 HOH C1164 SITE 1 AC6 7 ASP C 39 ARG C 74 GLU C 129 TYR C 150 SITE 2 AC6 7 ASP C 155 OAA C 285 HOH C 578 CRYST1 57.610 73.280 74.480 68.26 83.51 68.38 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017358 -0.006880 0.000507 0.00000 SCALE2 0.000000 0.014679 -0.005590 0.00000 SCALE3 0.000000 0.000000 0.014460 0.00000