HEADER TRANSFERASE 24-FEB-04 1SH0 TITLE CRYSTAL STRUCTURE OF NORWALK VIRUS POLYMERASE (TRICLINIC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINUS; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 3 ORGANISM_TAXID: 11983; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: XL-1 BLUE; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS RNA POLYMERASE, VIRAL REPLICATION ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.K.NG,N.PENDAS-FRANCO,J.ROJO,J.A.BOGA,A.MACHIN,J.M.ALONSO,F.PARRA REVDAT 5 23-AUG-23 1SH0 1 REMARK REVDAT 4 13-JUL-11 1SH0 1 VERSN REVDAT 3 24-FEB-09 1SH0 1 VERSN REVDAT 2 11-JAN-05 1SH0 1 JRNL REVDAT 1 09-MAR-04 1SH0 0 JRNL AUTH K.K.NG,N.PENDAS-FRANCO,J.ROJO,J.A.BOGA,A.MACHIN,J.M.ALONSO, JRNL AUTH 2 F.PARRA JRNL TITL CRYSTAL STRUCTURE OF NORWALK VIRUS POLYMERASE REVEALS THE JRNL TITL 2 CARBOXYL TERMINUS IN THE ACTIVE SITE CLEFT. JRNL REF J.BIOL.CHEM. V. 279 16638 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14764591 JRNL DOI 10.1074/JBC.M400584200 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 54384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2892 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3719 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7887 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 434 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.71000 REMARK 3 B13 (A**2) : -0.94000 REMARK 3 B23 (A**2) : -1.65000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.269 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.954 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8091 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10977 ; 1.022 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1003 ; 5.262 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1189 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6130 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3746 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 505 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.129 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.125 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5027 ; 1.179 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8138 ; 1.925 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3064 ; 2.998 ; 3.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2839 ; 4.182 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 209 REMARK 3 RESIDUE RANGE : A 244 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1411 9.6789 19.7073 REMARK 3 T TENSOR REMARK 3 T11: 0.0596 T22: 0.0407 REMARK 3 T33: 0.0816 T12: 0.0359 REMARK 3 T13: 0.0014 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.4037 L22: 0.4128 REMARK 3 L33: 1.5709 L12: -0.1434 REMARK 3 L13: -0.2254 L23: 0.0906 REMARK 3 S TENSOR REMARK 3 S11: -0.0352 S12: -0.0197 S13: -0.0210 REMARK 3 S21: 0.0167 S22: 0.0726 S23: -0.0788 REMARK 3 S31: 0.1756 S32: 0.1873 S33: -0.0374 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 210 A 243 REMARK 3 RESIDUE RANGE : A 305 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): -30.0176 31.3900 26.2890 REMARK 3 T TENSOR REMARK 3 T11: 0.0574 T22: 0.0036 REMARK 3 T33: 0.0442 T12: -0.0131 REMARK 3 T13: 0.0176 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 3.0117 L22: 1.9927 REMARK 3 L33: 2.4219 L12: -0.4155 REMARK 3 L13: 1.5007 L23: 0.0703 REMARK 3 S TENSOR REMARK 3 S11: -0.1475 S12: 0.0932 S13: 0.3530 REMARK 3 S21: -0.1844 S22: 0.0738 S23: -0.1691 REMARK 3 S31: -0.3504 S32: 0.1530 S33: 0.0737 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 390 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): -38.8658 24.0323 -0.6913 REMARK 3 T TENSOR REMARK 3 T11: 0.0794 T22: 0.0875 REMARK 3 T33: 0.1180 T12: -0.0065 REMARK 3 T13: -0.0042 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 2.5541 L22: 3.2639 REMARK 3 L33: 1.9297 L12: -2.1778 REMARK 3 L13: -1.6558 L23: 2.0833 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: 0.2221 S13: -0.2114 REMARK 3 S21: -0.0146 S22: -0.2515 S23: 0.3611 REMARK 3 S31: 0.0396 S32: -0.2820 S33: 0.2414 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 209 REMARK 3 RESIDUE RANGE : B 244 B 304 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7410 31.4093 60.3983 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.0686 REMARK 3 T33: 0.1075 T12: -0.0399 REMARK 3 T13: -0.0267 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 0.6843 L22: 0.1778 REMARK 3 L33: 2.3575 L12: 0.1713 REMARK 3 L13: 0.6370 L23: 0.2010 REMARK 3 S TENSOR REMARK 3 S11: -0.1776 S12: 0.0767 S13: 0.1998 REMARK 3 S21: -0.0803 S22: -0.0117 S23: -0.0105 REMARK 3 S31: -0.4084 S32: 0.1853 S33: 0.1892 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 210 B 243 REMARK 3 RESIDUE RANGE : B 305 B 389 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2681 9.4514 54.7189 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.0825 REMARK 3 T33: 0.0591 T12: 0.0018 REMARK 3 T13: -0.0020 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.4860 L22: 1.6294 REMARK 3 L33: 3.3188 L12: 0.3839 REMARK 3 L13: -1.7956 L23: 0.3863 REMARK 3 S TENSOR REMARK 3 S11: -0.0991 S12: -0.2207 S13: -0.2941 REMARK 3 S21: 0.2157 S22: -0.0081 S23: -0.0866 REMARK 3 S31: 0.4712 S32: 0.0705 S33: 0.1072 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 390 B 507 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6623 17.2611 81.2876 REMARK 3 T TENSOR REMARK 3 T11: 0.0742 T22: 0.0782 REMARK 3 T33: 0.0921 T12: 0.0004 REMARK 3 T13: 0.0215 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 3.5371 L22: 1.3998 REMARK 3 L33: 0.2516 L12: 1.0779 REMARK 3 L13: 0.6470 L23: 0.4408 REMARK 3 S TENSOR REMARK 3 S11: -0.0946 S12: -0.0218 S13: -0.0558 REMARK 3 S21: -0.0670 S22: -0.0157 S23: 0.1283 REMARK 3 S31: -0.0125 S32: -0.1186 S33: 0.1103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS REFINEMENT WAS PERFORMED FOR EACH REMARK 3 OF THREE DOMAINS IN EACH PROTOMER. REMARK 4 REMARK 4 1SH0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000021700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57284 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.14700 REMARK 200 R SYM FOR SHELL (I) : 0.14700 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BEAST REMARK 200 STARTING MODEL: PDB ENTRY 1KHV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM SULFATE, TRIS-CL, REMARK 280 GLYCEROL, 2-MERCAPTOETHANOL, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 GLY A 508 REMARK 465 VAL A 509 REMARK 465 GLU A 510 REMARK 465 GLY B 1 REMARK 465 GLY B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 GLY B 508 REMARK 465 VAL B 509 REMARK 465 GLU B 510 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 79 113.55 -30.52 REMARK 500 GLU A 134 -35.11 -131.14 REMARK 500 ASP A 240 42.20 -147.42 REMARK 500 ALA A 241 140.82 -36.21 REMARK 500 SER A 300 104.72 -56.75 REMARK 500 CYS A 304 19.87 58.93 REMARK 500 PRO A 372 93.34 -47.46 REMARK 500 ASP A 373 48.64 11.88 REMARK 500 GLU A 376 -43.19 -171.35 REMARK 500 ASP A 472 70.80 -118.85 REMARK 500 ASP A 496 109.75 -47.91 REMARK 500 ASN A 505 -178.45 -67.47 REMARK 500 GLU A 506 53.62 39.21 REMARK 500 TYR B 45 136.45 -38.67 REMARK 500 LYS B 79 117.17 -34.73 REMARK 500 ASP B 240 58.65 -151.64 REMARK 500 SER B 300 107.74 -51.87 REMARK 500 THR B 375 137.07 51.74 REMARK 500 GLU B 376 89.19 63.62 REMARK 500 HIS B 450 -166.45 -101.22 REMARK 500 ASP B 496 109.51 -53.28 REMARK 500 ASN B 505 -169.39 -71.07 REMARK 500 GLU B 506 69.89 33.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KHV RELATED DB: PDB REMARK 900 RHDV RNA POLYMERASE REMARK 900 RELATED ID: 1SH2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NORWALK VIRUS POLYMERASE (METAL-FREE, CENTERED REMARK 900 ORTHORHOMBIC) REMARK 900 RELATED ID: 1SH3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NORWALK VIRUS POLYMERASE (MGSO4 CRYSTAL FORM) DBREF 1SH0 A 1 510 UNP Q70ET3 Q70ET3_9CALI 329 838 DBREF 1SH0 B 1 510 UNP Q70ET3 Q70ET3_9CALI 329 838 SEQRES 1 A 510 GLY GLY ASP SER LYS GLY THR TYR CYS GLY ALA PRO ILE SEQRES 2 A 510 LEU GLY PRO GLY SER ALA PRO LYS LEU SER THR LYS THR SEQRES 3 A 510 LYS PHE TRP ARG SER SER THR ALA PRO LEU PRO PRO GLY SEQRES 4 A 510 THR TYR GLU PRO ALA TYR LEU GLY GLY LYS ASP PRO ARG SEQRES 5 A 510 VAL LYS GLY GLY PRO SER LEU GLN GLN VAL MET ARG ASP SEQRES 6 A 510 GLN LEU LYS PRO PHE THR GLU PRO ARG GLY LYS PRO PRO SEQRES 7 A 510 LYS PRO SER VAL LEU GLU ALA ALA LYS LYS THR ILE ILE SEQRES 8 A 510 ASN VAL LEU GLU GLN THR ILE ASP PRO PRO ASP LYS TRP SEQRES 9 A 510 SER PHE ALA GLN ALA CYS ALA SER LEU ASP LYS THR THR SEQRES 10 A 510 SER SER GLY HIS PRO HIS HIS MET ARG LYS ASN ASP CYS SEQRES 11 A 510 TRP ASN GLY GLU SER PHE THR GLY LYS LEU ALA ASP GLN SEQRES 12 A 510 ALA SER LYS ALA ASN LEU MET PHE GLU GLU GLY LYS ASN SEQRES 13 A 510 MET THR PRO VAL TYR THR GLY ALA LEU LYS ASP GLU LEU SEQRES 14 A 510 VAL LYS THR ASP LYS ILE TYR GLY LYS ILE LYS LYS ARG SEQRES 15 A 510 LEU LEU TRP GLY SER ASP LEU ALA THR MET ILE ARG CYS SEQRES 16 A 510 ALA ARG ALA PHE GLY GLY LEU MET ASP GLU LEU LYS THR SEQRES 17 A 510 HIS CYS VAL THR LEU PRO ILE ARG VAL GLY MET ASN MET SEQRES 18 A 510 ASN GLU ASP GLY PRO ILE ILE PHE GLU ARG HIS SER ARG SEQRES 19 A 510 TYR ARG TYR HIS TYR ASP ALA ASP TYR SER ARG TRP ASP SEQRES 20 A 510 SER THR GLN GLN ARG ALA VAL LEU ALA ALA ALA LEU GLU SEQRES 21 A 510 ILE MET VAL LYS PHE SER SER GLU PRO HIS LEU ALA GLN SEQRES 22 A 510 VAL VAL ALA GLU ASP LEU LEU SER PRO SER VAL VAL ASP SEQRES 23 A 510 VAL GLY ASP PHE THR ILE SER ILE ASN GLU GLY LEU PRO SEQRES 24 A 510 SER GLY VAL PRO CYS THR SER GLN TRP ASN SER ILE ALA SEQRES 25 A 510 HIS TRP LEU LEU THR LEU CYS ALA LEU SER GLU VAL THR SEQRES 26 A 510 ASN LEU SER PRO ASP ILE ILE GLN ALA ASN SER LEU PHE SEQRES 27 A 510 SER PHE TYR GLY ASP ASP GLU ILE VAL SER THR ASP ILE SEQRES 28 A 510 LYS LEU ASP PRO GLU LYS LEU THR ALA LYS LEU LYS GLU SEQRES 29 A 510 TYR GLY LEU LYS PRO THR ARG PRO ASP LYS THR GLU GLY SEQRES 30 A 510 PRO LEU VAL ILE SER GLU ASP LEU ASN GLY LEU THR PHE SEQRES 31 A 510 LEU ARG ARG THR VAL THR ARG ASP PRO ALA GLY TRP PHE SEQRES 32 A 510 GLY LYS LEU GLU GLN SER SER ILE LEU ARG GLN MET TYR SEQRES 33 A 510 TRP THR ARG GLY PRO ASN HIS GLU ASP PRO SER GLU THR SEQRES 34 A 510 MET ILE PRO HIS SER GLN ARG PRO ILE GLN LEU MET SER SEQRES 35 A 510 LEU LEU GLY GLU ALA ALA LEU HIS GLY PRO ALA PHE TYR SEQRES 36 A 510 SER LYS ILE SER LYS LEU VAL ILE ALA GLU LEU LYS GLU SEQRES 37 A 510 GLY GLY MET ASP PHE TYR VAL PRO ARG GLN GLU PRO MET SEQRES 38 A 510 PHE ARG TRP MET ARG PHE SER ASP LEU SER THR TRP GLU SEQRES 39 A 510 GLY ASP ARG ASN LEU ALA PRO SER PHE VAL ASN GLU ASP SEQRES 40 A 510 GLY VAL GLU SEQRES 1 B 510 GLY GLY ASP SER LYS GLY THR TYR CYS GLY ALA PRO ILE SEQRES 2 B 510 LEU GLY PRO GLY SER ALA PRO LYS LEU SER THR LYS THR SEQRES 3 B 510 LYS PHE TRP ARG SER SER THR ALA PRO LEU PRO PRO GLY SEQRES 4 B 510 THR TYR GLU PRO ALA TYR LEU GLY GLY LYS ASP PRO ARG SEQRES 5 B 510 VAL LYS GLY GLY PRO SER LEU GLN GLN VAL MET ARG ASP SEQRES 6 B 510 GLN LEU LYS PRO PHE THR GLU PRO ARG GLY LYS PRO PRO SEQRES 7 B 510 LYS PRO SER VAL LEU GLU ALA ALA LYS LYS THR ILE ILE SEQRES 8 B 510 ASN VAL LEU GLU GLN THR ILE ASP PRO PRO ASP LYS TRP SEQRES 9 B 510 SER PHE ALA GLN ALA CYS ALA SER LEU ASP LYS THR THR SEQRES 10 B 510 SER SER GLY HIS PRO HIS HIS MET ARG LYS ASN ASP CYS SEQRES 11 B 510 TRP ASN GLY GLU SER PHE THR GLY LYS LEU ALA ASP GLN SEQRES 12 B 510 ALA SER LYS ALA ASN LEU MET PHE GLU GLU GLY LYS ASN SEQRES 13 B 510 MET THR PRO VAL TYR THR GLY ALA LEU LYS ASP GLU LEU SEQRES 14 B 510 VAL LYS THR ASP LYS ILE TYR GLY LYS ILE LYS LYS ARG SEQRES 15 B 510 LEU LEU TRP GLY SER ASP LEU ALA THR MET ILE ARG CYS SEQRES 16 B 510 ALA ARG ALA PHE GLY GLY LEU MET ASP GLU LEU LYS THR SEQRES 17 B 510 HIS CYS VAL THR LEU PRO ILE ARG VAL GLY MET ASN MET SEQRES 18 B 510 ASN GLU ASP GLY PRO ILE ILE PHE GLU ARG HIS SER ARG SEQRES 19 B 510 TYR ARG TYR HIS TYR ASP ALA ASP TYR SER ARG TRP ASP SEQRES 20 B 510 SER THR GLN GLN ARG ALA VAL LEU ALA ALA ALA LEU GLU SEQRES 21 B 510 ILE MET VAL LYS PHE SER SER GLU PRO HIS LEU ALA GLN SEQRES 22 B 510 VAL VAL ALA GLU ASP LEU LEU SER PRO SER VAL VAL ASP SEQRES 23 B 510 VAL GLY ASP PHE THR ILE SER ILE ASN GLU GLY LEU PRO SEQRES 24 B 510 SER GLY VAL PRO CYS THR SER GLN TRP ASN SER ILE ALA SEQRES 25 B 510 HIS TRP LEU LEU THR LEU CYS ALA LEU SER GLU VAL THR SEQRES 26 B 510 ASN LEU SER PRO ASP ILE ILE GLN ALA ASN SER LEU PHE SEQRES 27 B 510 SER PHE TYR GLY ASP ASP GLU ILE VAL SER THR ASP ILE SEQRES 28 B 510 LYS LEU ASP PRO GLU LYS LEU THR ALA LYS LEU LYS GLU SEQRES 29 B 510 TYR GLY LEU LYS PRO THR ARG PRO ASP LYS THR GLU GLY SEQRES 30 B 510 PRO LEU VAL ILE SER GLU ASP LEU ASN GLY LEU THR PHE SEQRES 31 B 510 LEU ARG ARG THR VAL THR ARG ASP PRO ALA GLY TRP PHE SEQRES 32 B 510 GLY LYS LEU GLU GLN SER SER ILE LEU ARG GLN MET TYR SEQRES 33 B 510 TRP THR ARG GLY PRO ASN HIS GLU ASP PRO SER GLU THR SEQRES 34 B 510 MET ILE PRO HIS SER GLN ARG PRO ILE GLN LEU MET SER SEQRES 35 B 510 LEU LEU GLY GLU ALA ALA LEU HIS GLY PRO ALA PHE TYR SEQRES 36 B 510 SER LYS ILE SER LYS LEU VAL ILE ALA GLU LEU LYS GLU SEQRES 37 B 510 GLY GLY MET ASP PHE TYR VAL PRO ARG GLN GLU PRO MET SEQRES 38 B 510 PHE ARG TRP MET ARG PHE SER ASP LEU SER THR TRP GLU SEQRES 39 B 510 GLY ASP ARG ASN LEU ALA PRO SER PHE VAL ASN GLU ASP SEQRES 40 B 510 GLY VAL GLU FORMUL 3 HOH *434(H2 O) HELIX 1 1 SER A 58 GLU A 72 1 15 HELIX 2 2 LYS A 79 GLN A 96 1 18 HELIX 3 3 SER A 105 LEU A 113 1 9 HELIX 4 4 ARG A 126 TRP A 131 5 6 HELIX 5 5 GLY A 138 GLU A 153 1 16 HELIX 6 6 THR A 172 GLY A 177 1 6 HELIX 7 7 ASP A 188 HIS A 209 1 22 HELIX 8 8 ASN A 220 ARG A 234 1 15 HELIX 9 9 ARG A 245 GLN A 250 1 6 HELIX 10 10 GLN A 251 PHE A 265 1 15 HELIX 11 11 GLU A 268 SER A 281 1 14 HELIX 12 12 CYS A 304 ASN A 326 1 23 HELIX 13 13 SER A 328 ASN A 335 1 8 HELIX 14 14 ASP A 354 TYR A 365 1 12 HELIX 15 15 GLU A 407 TYR A 416 1 10 HELIX 16 16 SER A 434 LEU A 449 1 16 HELIX 17 17 GLY A 451 GLY A 469 1 19 HELIX 18 18 ARG A 477 SER A 488 1 12 HELIX 19 19 ASP A 496 ALA A 500 5 5 HELIX 20 20 SER B 58 GLU B 72 1 15 HELIX 21 21 LYS B 79 GLN B 96 1 18 HELIX 22 22 SER B 105 LEU B 113 1 9 HELIX 23 23 ARG B 126 TRP B 131 5 6 HELIX 24 24 GLY B 138 GLU B 153 1 16 HELIX 25 25 THR B 172 GLY B 177 1 6 HELIX 26 26 ASP B 188 HIS B 209 1 22 HELIX 27 27 ASN B 220 ARG B 234 1 15 HELIX 28 28 ARG B 245 GLN B 250 1 6 HELIX 29 29 GLN B 251 PHE B 265 1 15 HELIX 30 30 GLU B 268 SER B 281 1 14 HELIX 31 31 CYS B 304 ASN B 326 1 23 HELIX 32 32 SER B 328 ASN B 335 1 8 HELIX 33 33 ASP B 354 TYR B 365 1 12 HELIX 34 34 GLU B 407 TYR B 416 1 10 HELIX 35 35 SER B 434 ALA B 448 1 15 HELIX 36 36 GLY B 451 GLY B 469 1 19 HELIX 37 37 ARG B 477 SER B 488 1 12 HELIX 38 38 ASP B 496 ALA B 500 5 5 SHEET 1 A 6 THR A 7 TYR A 8 0 SHEET 2 A 6 ALA A 11 PRO A 16 -1 O ALA A 11 N TYR A 8 SHEET 3 A 6 PHE A 290 ILE A 294 -1 O THR A 291 N LEU A 14 SHEET 4 A 6 SER A 283 ASP A 286 -1 N SER A 283 O ILE A 294 SHEET 5 A 6 VAL A 160 LEU A 165 1 N TYR A 161 O VAL A 284 SHEET 6 A 6 LEU A 183 GLY A 186 -1 O LEU A 184 N ALA A 164 SHEET 1 B 2 THR A 26 ARG A 30 0 SHEET 2 B 2 TRP A 417 HIS A 423 -1 O THR A 418 N TRP A 29 SHEET 1 C 2 GLU A 42 PRO A 43 0 SHEET 2 C 2 LEU A 169 VAL A 170 -1 O VAL A 170 N GLU A 42 SHEET 1 D 3 TYR A 237 TYR A 239 0 SHEET 2 D 3 ASP A 344 THR A 349 -1 O THR A 349 N TYR A 237 SHEET 3 D 3 SER A 336 TYR A 341 -1 N LEU A 337 O SER A 348 SHEET 1 E 2 ASP A 242 TYR A 243 0 SHEET 2 E 2 PRO A 369 THR A 370 -1 O THR A 370 N ASP A 242 SHEET 1 F 3 THR A 389 PHE A 390 0 SHEET 2 F 3 ARG A 393 ASP A 398 -1 O ARG A 393 N PHE A 390 SHEET 3 F 3 GLY A 401 LEU A 406 -1 O LYS A 405 N THR A 394 SHEET 1 G 6 THR B 7 TYR B 8 0 SHEET 2 G 6 ALA B 11 PRO B 16 -1 O ALA B 11 N TYR B 8 SHEET 3 G 6 PHE B 290 ILE B 294 -1 O THR B 291 N LEU B 14 SHEET 4 G 6 SER B 283 ASP B 286 -1 N SER B 283 O ILE B 294 SHEET 5 G 6 VAL B 160 LEU B 165 1 N TYR B 161 O VAL B 284 SHEET 6 G 6 LEU B 183 GLY B 186 -1 O GLY B 186 N THR B 162 SHEET 1 H 2 THR B 26 ARG B 30 0 SHEET 2 H 2 TRP B 417 HIS B 423 -1 O THR B 418 N TRP B 29 SHEET 1 I 2 GLU B 42 PRO B 43 0 SHEET 2 I 2 LEU B 169 VAL B 170 -1 O VAL B 170 N GLU B 42 SHEET 1 J 3 TYR B 237 TYR B 239 0 SHEET 2 J 3 ASP B 344 THR B 349 -1 O THR B 349 N TYR B 237 SHEET 3 J 3 SER B 336 TYR B 341 -1 N LEU B 337 O SER B 348 SHEET 1 K 2 ASP B 242 TYR B 243 0 SHEET 2 K 2 PRO B 369 THR B 370 -1 O THR B 370 N ASP B 242 SHEET 1 L 3 THR B 389 PHE B 390 0 SHEET 2 L 3 ARG B 393 ASP B 398 -1 O ARG B 393 N PHE B 390 SHEET 3 L 3 GLY B 401 LEU B 406 -1 O LYS B 405 N THR B 394 CISPEP 1 HIS A 121 PRO A 122 0 -4.29 CISPEP 2 HIS B 121 PRO B 122 0 -3.10 CRYST1 55.144 59.914 100.095 104.36 92.49 111.91 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018134 0.007293 0.002991 0.00000 SCALE2 0.000000 0.017990 0.005351 0.00000 SCALE3 0.000000 0.000000 0.010433 0.00000