HEADER TRANSFERASE 24-FEB-04 1SH3 TITLE CRYSTAL STRUCTURE OF NORWALK VIRUS POLYMERASE (MGSO4 CRYSTAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINUS; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 3 ORGANISM_TAXID: 11983; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: XL-1 BLUE; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS RNA POLYMERASE, VIRAL REPLICATION ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.K.NG,N.PENDAS-FRANCO,J.ROJO,J.A.BOGA,A.MACHIN,J.M.ALONSO,F.PARRA REVDAT 5 23-AUG-23 1SH3 1 REMARK LINK REVDAT 4 13-JUL-11 1SH3 1 VERSN REVDAT 3 24-FEB-09 1SH3 1 VERSN REVDAT 2 11-JAN-05 1SH3 1 JRNL REVDAT 1 09-MAR-04 1SH3 0 JRNL AUTH K.K.NG,N.PENDAS-FRANCO,J.ROJO,J.A.BOGA,A.MACHIN,J.M.ALONSO, JRNL AUTH 2 F.PARRA JRNL TITL CRYSTAL STRUCTURE OF NORWALK VIRUS POLYMERASE REVEALS THE JRNL TITL 2 CARBOXYL TERMINUS IN THE ACTIVE SITE CLEFT. JRNL REF J.BIOL.CHEM. V. 279 16638 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14764591 JRNL DOI 10.1074/JBC.M400584200 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1419 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1865 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7887 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 76.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.22000 REMARK 3 B22 (A**2) : 1.85000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.461 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.354 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.261 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.862 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8092 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10977 ; 1.146 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1003 ; 5.774 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1189 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6130 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3675 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 265 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.256 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.091 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5027 ; 0.891 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8138 ; 1.633 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3065 ; 2.162 ; 3.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2839 ; 3.396 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 507 6 REMARK 3 1 B 6 B 507 6 REMARK 3 2 A 600 A 600 1 REMARK 3 2 B 600 B 600 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1 ; 0.07 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 3939 ; 0.61 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 1 ; 0.17 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 3939 ; 2.25 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 209 REMARK 3 RESIDUE RANGE : A 244 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6481 -1.4287 51.9046 REMARK 3 T TENSOR REMARK 3 T11: 0.1361 T22: 0.0998 REMARK 3 T33: 0.0007 T12: 0.0233 REMARK 3 T13: -0.0097 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.7680 L22: 1.0046 REMARK 3 L33: 1.4452 L12: 0.2765 REMARK 3 L13: 0.3268 L23: -0.1962 REMARK 3 S TENSOR REMARK 3 S11: 0.0616 S12: -0.0658 S13: 0.0815 REMARK 3 S21: 0.1187 S22: -0.0186 S23: 0.0975 REMARK 3 S31: 0.0144 S32: 0.0806 S33: -0.0431 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 210 A 243 REMARK 3 RESIDUE RANGE : A 305 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 43.5849 2.3406 35.8839 REMARK 3 T TENSOR REMARK 3 T11: 0.0681 T22: 0.1948 REMARK 3 T33: 0.0495 T12: -0.0343 REMARK 3 T13: -0.0080 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 3.4719 L22: 2.1957 REMARK 3 L33: 3.5571 L12: -0.4291 REMARK 3 L13: -0.1530 L23: -1.4231 REMARK 3 S TENSOR REMARK 3 S11: -0.0577 S12: 0.3848 S13: 0.0566 REMARK 3 S21: -0.3128 S22: -0.1624 S23: -0.1635 REMARK 3 S31: 0.0713 S32: 0.3181 S33: 0.2201 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 390 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8358 5.5324 23.9396 REMARK 3 T TENSOR REMARK 3 T11: 0.1834 T22: 0.2840 REMARK 3 T33: 0.0737 T12: 0.0118 REMARK 3 T13: -0.0295 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.2736 L22: 3.5695 REMARK 3 L33: 2.5578 L12: 0.7058 REMARK 3 L13: -1.2709 L23: -3.0892 REMARK 3 S TENSOR REMARK 3 S11: 0.1491 S12: -0.2320 S13: 0.2260 REMARK 3 S21: -0.0019 S22: 0.0372 S23: 0.2477 REMARK 3 S31: -0.0773 S32: -0.0678 S33: -0.1863 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 209 REMARK 3 RESIDUE RANGE : B 244 B 304 REMARK 3 ORIGIN FOR THE GROUP (A): 63.6503 5.3184 7.0719 REMARK 3 T TENSOR REMARK 3 T11: 0.1932 T22: 0.1487 REMARK 3 T33: 0.3492 T12: 0.0203 REMARK 3 T13: -0.0417 T23: 0.1543 REMARK 3 L TENSOR REMARK 3 L11: 2.9654 L22: 2.7256 REMARK 3 L33: 2.1741 L12: 0.4908 REMARK 3 L13: 0.1316 L23: 0.2086 REMARK 3 S TENSOR REMARK 3 S11: 0.2344 S12: -0.2712 S13: -0.3019 REMARK 3 S21: 0.1507 S22: -0.3546 S23: -0.6940 REMARK 3 S31: 0.3400 S32: 0.1299 S33: 0.1202 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 210 B 243 REMARK 3 RESIDUE RANGE : B 305 B 389 REMARK 3 ORIGIN FOR THE GROUP (A): 86.9113 10.9787 2.9395 REMARK 3 T TENSOR REMARK 3 T11: 0.1150 T22: 0.3199 REMARK 3 T33: 1.1859 T12: 0.0475 REMARK 3 T13: -0.0623 T23: 0.2571 REMARK 3 L TENSOR REMARK 3 L11: 4.1501 L22: 4.6733 REMARK 3 L33: 4.4785 L12: 0.8035 REMARK 3 L13: 0.6055 L23: -1.2175 REMARK 3 S TENSOR REMARK 3 S11: 0.2986 S12: 0.0999 S13: -0.2505 REMARK 3 S21: -0.3640 S22: -0.0697 S23: -1.4162 REMARK 3 S31: 0.3244 S32: 0.5638 S33: -0.2289 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 390 B 507 REMARK 3 ORIGIN FOR THE GROUP (A): 70.7037 14.7922 -21.4108 REMARK 3 T TENSOR REMARK 3 T11: 0.7732 T22: 0.3928 REMARK 3 T33: 0.3233 T12: 0.0263 REMARK 3 T13: 0.3142 T23: -0.1715 REMARK 3 L TENSOR REMARK 3 L11: 2.9543 L22: 10.4954 REMARK 3 L33: 0.5125 L12: 5.8178 REMARK 3 L13: 0.5237 L23: -2.8309 REMARK 3 S TENSOR REMARK 3 S11: -0.5165 S12: 0.3029 S13: -0.6024 REMARK 3 S21: -1.3306 S22: 0.1069 S23: -0.6861 REMARK 3 S31: 0.0763 S32: 0.1256 S33: 0.4096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS REFINEMENT WAS PERFORMED FOR EACH REMARK 3 OF THREE DOMAINS IN EACH PROTOMER REMARK 4 REMARK 4 1SH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000021702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27684 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : 0.11500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : 0.61800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BEAST REMARK 200 STARTING MODEL: PDB ENTRY 1KHV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM SULFATE, MAGNESIUM REMARK 280 SULFATE, TRIS-CL, GLYCEROL, CHAPS, 2-MERCAPTOETHANOL, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.52500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.02200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.57000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.02200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.52500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.57000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 GLY A 508 REMARK 465 VAL A 509 REMARK 465 GLU A 510 REMARK 465 GLY B 1 REMARK 465 GLY B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 GLY B 508 REMARK 465 VAL B 509 REMARK 465 GLU B 510 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 18 18.32 -146.57 REMARK 500 THR A 97 -51.04 -127.39 REMARK 500 CYS A 130 50.88 -113.56 REMARK 500 LYS A 174 4.65 -65.12 REMARK 500 ILE A 175 -56.73 -125.46 REMARK 500 ASP A 242 79.48 40.67 REMARK 500 ARG A 245 59.18 31.39 REMARK 500 CYS A 304 37.08 -99.24 REMARK 500 ARG A 392 19.12 59.55 REMARK 500 PRO A 399 -29.01 -36.10 REMARK 500 HIS A 433 156.55 -40.17 REMARK 500 VAL A 504 151.69 -40.56 REMARK 500 ASN A 505 -87.35 -62.35 REMARK 500 SER B 32 -168.71 -124.95 REMARK 500 TYR B 45 136.06 -33.24 REMARK 500 PRO B 51 12.36 -68.93 REMARK 500 LYS B 79 114.54 -38.36 REMARK 500 THR B 97 -70.12 -84.62 REMARK 500 GLU B 134 -12.90 -146.04 REMARK 500 THR B 137 -91.74 -75.48 REMARK 500 LYS B 155 131.09 -21.38 REMARK 500 THR B 172 -18.94 -47.23 REMARK 500 LYS B 174 6.67 -67.25 REMARK 500 HIS B 209 40.89 -104.13 REMARK 500 ALA B 241 -23.88 67.63 REMARK 500 ASP B 242 96.62 1.24 REMARK 500 ARG B 245 56.05 35.05 REMARK 500 PRO B 282 123.25 -35.86 REMARK 500 ASP B 289 -70.93 -60.86 REMARK 500 VAL B 302 130.44 -18.43 REMARK 500 PRO B 303 -52.74 -11.62 REMARK 500 THR B 305 -8.94 -56.65 REMARK 500 LYS B 374 65.81 -50.15 REMARK 500 GLU B 376 57.48 39.83 REMARK 500 ASN B 386 140.61 -38.24 REMARK 500 PRO B 399 -41.77 -29.17 REMARK 500 PRO B 432 62.85 -42.83 REMARK 500 HIS B 433 -105.74 19.87 REMARK 500 SER B 434 -14.56 179.84 REMARK 500 ASN B 505 -165.82 -72.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 600 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 240 OD1 REMARK 620 2 ASP B 344 OD1 144.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KHV RELATED DB: PDB REMARK 900 RHDV RNA POLYMERASE REMARK 900 RELATED ID: 1SH0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NORWALK VIRUS POLYMERASE (TRICLINIC) REMARK 900 RELATED ID: 1SH2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NORWALK VIRUS POLYMERASE (METAL-FREE, CENTERED REMARK 900 ORTHORHOMBIC) DBREF 1SH3 A 1 510 UNP Q70ET3 Q70ET3_9CALI 329 838 DBREF 1SH3 B 1 510 UNP Q70ET3 Q70ET3_9CALI 329 838 SEQRES 1 A 510 GLY GLY ASP SER LYS GLY THR TYR CYS GLY ALA PRO ILE SEQRES 2 A 510 LEU GLY PRO GLY SER ALA PRO LYS LEU SER THR LYS THR SEQRES 3 A 510 LYS PHE TRP ARG SER SER THR ALA PRO LEU PRO PRO GLY SEQRES 4 A 510 THR TYR GLU PRO ALA TYR LEU GLY GLY LYS ASP PRO ARG SEQRES 5 A 510 VAL LYS GLY GLY PRO SER LEU GLN GLN VAL MET ARG ASP SEQRES 6 A 510 GLN LEU LYS PRO PHE THR GLU PRO ARG GLY LYS PRO PRO SEQRES 7 A 510 LYS PRO SER VAL LEU GLU ALA ALA LYS LYS THR ILE ILE SEQRES 8 A 510 ASN VAL LEU GLU GLN THR ILE ASP PRO PRO ASP LYS TRP SEQRES 9 A 510 SER PHE ALA GLN ALA CYS ALA SER LEU ASP LYS THR THR SEQRES 10 A 510 SER SER GLY HIS PRO HIS HIS MET ARG LYS ASN ASP CYS SEQRES 11 A 510 TRP ASN GLY GLU SER PHE THR GLY LYS LEU ALA ASP GLN SEQRES 12 A 510 ALA SER LYS ALA ASN LEU MET PHE GLU GLU GLY LYS ASN SEQRES 13 A 510 MET THR PRO VAL TYR THR GLY ALA LEU LYS ASP GLU LEU SEQRES 14 A 510 VAL LYS THR ASP LYS ILE TYR GLY LYS ILE LYS LYS ARG SEQRES 15 A 510 LEU LEU TRP GLY SER ASP LEU ALA THR MET ILE ARG CYS SEQRES 16 A 510 ALA ARG ALA PHE GLY GLY LEU MET ASP GLU LEU LYS THR SEQRES 17 A 510 HIS CYS VAL THR LEU PRO ILE ARG VAL GLY MET ASN MET SEQRES 18 A 510 ASN GLU ASP GLY PRO ILE ILE PHE GLU ARG HIS SER ARG SEQRES 19 A 510 TYR ARG TYR HIS TYR ASP ALA ASP TYR SER ARG TRP ASP SEQRES 20 A 510 SER THR GLN GLN ARG ALA VAL LEU ALA ALA ALA LEU GLU SEQRES 21 A 510 ILE MET VAL LYS PHE SER SER GLU PRO HIS LEU ALA GLN SEQRES 22 A 510 VAL VAL ALA GLU ASP LEU LEU SER PRO SER VAL VAL ASP SEQRES 23 A 510 VAL GLY ASP PHE THR ILE SER ILE ASN GLU GLY LEU PRO SEQRES 24 A 510 SER GLY VAL PRO CYS THR SER GLN TRP ASN SER ILE ALA SEQRES 25 A 510 HIS TRP LEU LEU THR LEU CYS ALA LEU SER GLU VAL THR SEQRES 26 A 510 ASN LEU SER PRO ASP ILE ILE GLN ALA ASN SER LEU PHE SEQRES 27 A 510 SER PHE TYR GLY ASP ASP GLU ILE VAL SER THR ASP ILE SEQRES 28 A 510 LYS LEU ASP PRO GLU LYS LEU THR ALA LYS LEU LYS GLU SEQRES 29 A 510 TYR GLY LEU LYS PRO THR ARG PRO ASP LYS THR GLU GLY SEQRES 30 A 510 PRO LEU VAL ILE SER GLU ASP LEU ASN GLY LEU THR PHE SEQRES 31 A 510 LEU ARG ARG THR VAL THR ARG ASP PRO ALA GLY TRP PHE SEQRES 32 A 510 GLY LYS LEU GLU GLN SER SER ILE LEU ARG GLN MET TYR SEQRES 33 A 510 TRP THR ARG GLY PRO ASN HIS GLU ASP PRO SER GLU THR SEQRES 34 A 510 MET ILE PRO HIS SER GLN ARG PRO ILE GLN LEU MET SER SEQRES 35 A 510 LEU LEU GLY GLU ALA ALA LEU HIS GLY PRO ALA PHE TYR SEQRES 36 A 510 SER LYS ILE SER LYS LEU VAL ILE ALA GLU LEU LYS GLU SEQRES 37 A 510 GLY GLY MET ASP PHE TYR VAL PRO ARG GLN GLU PRO MET SEQRES 38 A 510 PHE ARG TRP MET ARG PHE SER ASP LEU SER THR TRP GLU SEQRES 39 A 510 GLY ASP ARG ASN LEU ALA PRO SER PHE VAL ASN GLU ASP SEQRES 40 A 510 GLY VAL GLU SEQRES 1 B 510 GLY GLY ASP SER LYS GLY THR TYR CYS GLY ALA PRO ILE SEQRES 2 B 510 LEU GLY PRO GLY SER ALA PRO LYS LEU SER THR LYS THR SEQRES 3 B 510 LYS PHE TRP ARG SER SER THR ALA PRO LEU PRO PRO GLY SEQRES 4 B 510 THR TYR GLU PRO ALA TYR LEU GLY GLY LYS ASP PRO ARG SEQRES 5 B 510 VAL LYS GLY GLY PRO SER LEU GLN GLN VAL MET ARG ASP SEQRES 6 B 510 GLN LEU LYS PRO PHE THR GLU PRO ARG GLY LYS PRO PRO SEQRES 7 B 510 LYS PRO SER VAL LEU GLU ALA ALA LYS LYS THR ILE ILE SEQRES 8 B 510 ASN VAL LEU GLU GLN THR ILE ASP PRO PRO ASP LYS TRP SEQRES 9 B 510 SER PHE ALA GLN ALA CYS ALA SER LEU ASP LYS THR THR SEQRES 10 B 510 SER SER GLY HIS PRO HIS HIS MET ARG LYS ASN ASP CYS SEQRES 11 B 510 TRP ASN GLY GLU SER PHE THR GLY LYS LEU ALA ASP GLN SEQRES 12 B 510 ALA SER LYS ALA ASN LEU MET PHE GLU GLU GLY LYS ASN SEQRES 13 B 510 MET THR PRO VAL TYR THR GLY ALA LEU LYS ASP GLU LEU SEQRES 14 B 510 VAL LYS THR ASP LYS ILE TYR GLY LYS ILE LYS LYS ARG SEQRES 15 B 510 LEU LEU TRP GLY SER ASP LEU ALA THR MET ILE ARG CYS SEQRES 16 B 510 ALA ARG ALA PHE GLY GLY LEU MET ASP GLU LEU LYS THR SEQRES 17 B 510 HIS CYS VAL THR LEU PRO ILE ARG VAL GLY MET ASN MET SEQRES 18 B 510 ASN GLU ASP GLY PRO ILE ILE PHE GLU ARG HIS SER ARG SEQRES 19 B 510 TYR ARG TYR HIS TYR ASP ALA ASP TYR SER ARG TRP ASP SEQRES 20 B 510 SER THR GLN GLN ARG ALA VAL LEU ALA ALA ALA LEU GLU SEQRES 21 B 510 ILE MET VAL LYS PHE SER SER GLU PRO HIS LEU ALA GLN SEQRES 22 B 510 VAL VAL ALA GLU ASP LEU LEU SER PRO SER VAL VAL ASP SEQRES 23 B 510 VAL GLY ASP PHE THR ILE SER ILE ASN GLU GLY LEU PRO SEQRES 24 B 510 SER GLY VAL PRO CYS THR SER GLN TRP ASN SER ILE ALA SEQRES 25 B 510 HIS TRP LEU LEU THR LEU CYS ALA LEU SER GLU VAL THR SEQRES 26 B 510 ASN LEU SER PRO ASP ILE ILE GLN ALA ASN SER LEU PHE SEQRES 27 B 510 SER PHE TYR GLY ASP ASP GLU ILE VAL SER THR ASP ILE SEQRES 28 B 510 LYS LEU ASP PRO GLU LYS LEU THR ALA LYS LEU LYS GLU SEQRES 29 B 510 TYR GLY LEU LYS PRO THR ARG PRO ASP LYS THR GLU GLY SEQRES 30 B 510 PRO LEU VAL ILE SER GLU ASP LEU ASN GLY LEU THR PHE SEQRES 31 B 510 LEU ARG ARG THR VAL THR ARG ASP PRO ALA GLY TRP PHE SEQRES 32 B 510 GLY LYS LEU GLU GLN SER SER ILE LEU ARG GLN MET TYR SEQRES 33 B 510 TRP THR ARG GLY PRO ASN HIS GLU ASP PRO SER GLU THR SEQRES 34 B 510 MET ILE PRO HIS SER GLN ARG PRO ILE GLN LEU MET SER SEQRES 35 B 510 LEU LEU GLY GLU ALA ALA LEU HIS GLY PRO ALA PHE TYR SEQRES 36 B 510 SER LYS ILE SER LYS LEU VAL ILE ALA GLU LEU LYS GLU SEQRES 37 B 510 GLY GLY MET ASP PHE TYR VAL PRO ARG GLN GLU PRO MET SEQRES 38 B 510 PHE ARG TRP MET ARG PHE SER ASP LEU SER THR TRP GLU SEQRES 39 B 510 GLY ASP ARG ASN LEU ALA PRO SER PHE VAL ASN GLU ASP SEQRES 40 B 510 GLY VAL GLU HET MG A 600 1 HET MG B 600 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *3(H2 O) HELIX 1 1 SER A 58 GLU A 72 1 15 HELIX 2 2 LYS A 79 GLN A 96 1 18 HELIX 3 3 SER A 105 SER A 112 1 8 HELIX 4 4 ARG A 126 TRP A 131 5 6 HELIX 5 5 GLY A 138 GLU A 153 1 16 HELIX 6 6 THR A 172 GLY A 177 1 6 HELIX 7 7 ASP A 188 HIS A 209 1 22 HELIX 8 8 ASP A 224 SER A 233 1 10 HELIX 9 9 ARG A 245 GLN A 250 1 6 HELIX 10 10 GLN A 251 SER A 266 1 16 HELIX 11 11 GLU A 268 SER A 281 1 14 HELIX 12 12 VAL A 302 CYS A 304 5 3 HELIX 13 13 THR A 305 ASN A 326 1 22 HELIX 14 14 SER A 328 ASN A 335 1 8 HELIX 15 15 ASP A 354 TYR A 365 1 12 HELIX 16 16 GLU A 407 TYR A 416 1 10 HELIX 17 17 GLN A 435 LEU A 449 1 15 HELIX 18 18 GLY A 451 GLU A 468 1 18 HELIX 19 19 ARG A 477 SER A 488 1 12 HELIX 20 20 ASP A 496 ALA A 500 5 5 HELIX 21 21 SER B 58 GLU B 72 1 15 HELIX 22 22 LYS B 79 ILE B 98 1 20 HELIX 23 23 SER B 105 LEU B 113 1 9 HELIX 24 24 ARG B 126 TRP B 131 5 6 HELIX 25 25 GLY B 138 GLU B 153 1 16 HELIX 26 26 THR B 172 GLY B 177 1 6 HELIX 27 27 ASP B 188 HIS B 209 1 22 HELIX 28 28 GLU B 223 ARG B 234 1 12 HELIX 29 29 TRP B 246 GLN B 250 5 5 HELIX 30 30 GLN B 251 PHE B 265 1 15 HELIX 31 31 GLU B 268 SER B 281 1 14 HELIX 32 32 SER B 306 ASN B 326 1 21 HELIX 33 33 SER B 328 ASN B 335 1 8 HELIX 34 34 ASP B 354 GLY B 366 1 13 HELIX 35 35 GLU B 407 TYR B 416 1 10 HELIX 36 36 GLN B 435 LEU B 449 1 15 HELIX 37 37 GLY B 451 GLY B 469 1 19 HELIX 38 38 ARG B 477 SER B 488 1 12 HELIX 39 39 ASP B 496 ALA B 500 5 5 SHEET 1 A 6 THR A 7 TYR A 8 0 SHEET 2 A 6 ALA A 11 GLY A 15 -1 O ALA A 11 N TYR A 8 SHEET 3 A 6 THR A 291 ILE A 294 -1 O THR A 291 N LEU A 14 SHEET 4 A 6 SER A 283 ASP A 286 -1 N SER A 283 O ILE A 294 SHEET 5 A 6 VAL A 160 LEU A 165 1 N TYR A 161 O ASP A 286 SHEET 6 A 6 LEU A 183 GLY A 186 -1 O LEU A 184 N ALA A 164 SHEET 1 B 2 THR A 26 ARG A 30 0 SHEET 2 B 2 TRP A 417 HIS A 423 -1 O THR A 418 N TRP A 29 SHEET 1 C 2 GLU A 42 PRO A 43 0 SHEET 2 C 2 LEU A 169 VAL A 170 -1 O VAL A 170 N GLU A 42 SHEET 1 D 3 TYR A 237 TYR A 239 0 SHEET 2 D 3 ASP A 344 THR A 349 -1 O THR A 349 N TYR A 237 SHEET 3 D 3 SER A 336 TYR A 341 -1 N LEU A 337 O SER A 348 SHEET 1 E 3 THR A 389 PHE A 390 0 SHEET 2 E 3 ARG A 393 ASP A 398 -1 O ARG A 393 N PHE A 390 SHEET 3 E 3 GLY A 401 LEU A 406 -1 O LYS A 405 N THR A 394 SHEET 1 F 5 ILE B 13 PRO B 16 0 SHEET 2 F 5 PHE B 290 ILE B 294 -1 O THR B 291 N LEU B 14 SHEET 3 F 5 SER B 283 ASP B 286 -1 N VAL B 285 O ILE B 292 SHEET 4 F 5 VAL B 160 LEU B 165 1 N GLY B 163 O ASP B 286 SHEET 5 F 5 LEU B 183 GLY B 186 -1 O GLY B 186 N THR B 162 SHEET 1 G 2 THR B 26 ARG B 30 0 SHEET 2 G 2 TRP B 417 HIS B 423 -1 O THR B 418 N TRP B 29 SHEET 1 H 2 GLU B 42 PRO B 43 0 SHEET 2 H 2 LEU B 169 VAL B 170 -1 O VAL B 170 N GLU B 42 SHEET 1 I 3 TYR B 237 TYR B 239 0 SHEET 2 I 3 ASP B 344 THR B 349 -1 O THR B 349 N TYR B 237 SHEET 3 I 3 SER B 336 TYR B 341 -1 N LEU B 337 O SER B 348 SHEET 1 J 3 THR B 389 PHE B 390 0 SHEET 2 J 3 ARG B 393 ASP B 398 -1 O ARG B 393 N PHE B 390 SHEET 3 J 3 GLY B 401 LEU B 406 -1 O LYS B 405 N THR B 394 LINK OD1 ASP A 344 MG MG A 600 1555 1555 2.18 LINK OD1 ASP B 240 MG MG B 600 1555 1555 2.93 LINK OD1 ASP B 344 MG MG B 600 1555 1555 2.24 CISPEP 1 HIS A 121 PRO A 122 0 -2.76 CISPEP 2 HIS B 121 PRO B 122 0 -6.54 SITE 1 AC1 3 ASP A 240 ASP A 344 THR A 389 SITE 1 AC2 4 ASP B 240 ASP B 344 GLU B 345 THR B 389 CRYST1 105.050 109.140 112.044 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009519 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008925 0.00000